|
Name |
Accession |
Description |
Interval |
E-value |
| VI_ClpV1 |
TIGR03345 |
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, ... |
13-888 |
0e+00 |
|
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274528 [Multi-domain] Cd Length: 852 Bit Score: 1331.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 13 LNSLAYKAIEAATVFCKLRGNPYVELVHWFHQILQLPDSDLHQIVRQSGIDPARLAKDLTEALDRLPRGSTSITDLSSHV 92
Cdd:TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGNTRTPVFSPHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 93 EEAVERGWVYGSLMFGESQVRTGYLVIGILKTPSLRHALTGLSAEFAKLKVEALTERFDEYVGASPEnglsasdgfnAGA 172
Cdd:TIGR03345 81 VELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAE----------ASA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 173 APGEASGALAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFAL 252
Cdd:TIGR03345 151 AAADAAPAGAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLAL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 253 RIVAGDVPPALKDVELRALDVGLLQAGASMKGEFEQRLRQVIEDVQSSEKPIILFIDEAHTLVGAGGAAGTGDAANLLKP 332
Cdd:TIGR03345 231 RIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 333 ALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHRYI 412
Cdd:TIGR03345 311 ALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 413 PARQLPDKSVSLLDTACARTAISLHAVPAEVDDSRRRIEALETELAIIRRESAIGVATAERQRNAETLLAEERERLAALE 492
Cdd:TIGR03345 391 PGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALE 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 493 QRWAEEKRLVDELLETRARLRAAAEAvdaggvplgegevrlDEEQRQALHARLAELQAQLSALQGEEPLILPTVDYQAVA 572
Cdd:TIGR03345 471 ARWQQEKELVEAILALRAELEADADA---------------PADDDDALRAQLAELEAALASAQGEEPLVFPEVDAQAVA 535
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 573 SVVADWTGIPVGRMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALA 652
Cdd:TIGR03345 536 EVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALA 615
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 653 LAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKG 732
Cdd:TIGR03345 616 LAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKG 695
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 733 VMEDGEGRVIDFKNTLILLTTNAGTEMIASLCADPELMPEPEAIAKSLREPLLKIFPPALLGRLVTIPYYPLSDDMLKAI 812
Cdd:TIGR03345 696 VMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAI 775
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595288 813 SRLQLGRIKKRVEATHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREFLTRMLEGKPLAGVRIS 888
Cdd:TIGR03345 776 VRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEPIERIHLD 851
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
10-894 |
0e+00 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 1081.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 10 FGKLNSLAYKAIEAATVFCKLRGNPYVELVHWFHQILQLPDSDLHQIVRQSGIDPARLAKDLTEALDRLPR--GSTSITD 87
Cdd:COG0542 3 FEKFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEEALGRLPKvsGSSGQPY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 88 LSSHVEEAVERGWVYGSLMfGESQVRTGYLVIGILKTPSlRHALTGLSAefAKLKVEALTERFDEYVGASPENGlsasdg 167
Cdd:COG0542 83 LSPRLKRVLELAELEARKL-GDEYISTEHLLLALLREGE-GVAARILKK--LGITLEALREALEELRGGSRVTS------ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 168 fnagaapgeasgalaPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVV 247
Cdd:COG0542 153 ---------------QNPESKTPALDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIV 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 248 EGFALRIVAGDVPPALKDVELRALDVGLLQAGASMKGEFEQRLRQVIEDVQSSEKPIILFIDEAHTLVGAGGAAGTGDAA 327
Cdd:COG0542 218 EGLAQRIVNGDVPESLKDKRVLSLDLGALVAGAKYRGEFEERLKAVLDEVKKSEGNIILFIDELHTLVGAGGAEGAMDAA 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 328 NLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRL 407
Cdd:COG0542 298 NLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRL 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 408 SHRYIPARQLPDKSVSLLDTACARTAISLHAVPAEVDDSRRRIEALETELAIIRRESAIgvATAERQRNAETLLAEERER 487
Cdd:COG0542 378 SDRYITDRFLPDKAIDLIDEAAARVRMEIDSKPEELDELERRLEQLEIEKEALKKEQDE--ASFERLAELRDELAELEEE 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 488 LAALEQRWAEEKRLVDELLETrarlraaaeavdaggvplgEGEVRLDEEQRQALHARLAELQAQLSALqgeEPLILPTVD 567
Cdd:COG0542 456 LEALKARWEAEKELIEEIQEL-------------------KEELEQRYGKIPELEKELAELEEELAEL---APLLREEVT 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 568 YQAVASVVADWTGIPVGRMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKT 647
Cdd:COG0542 514 EEDIAEVVSRWTGIPVGKLLEGEREKLLNLEEELHERVIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKT 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 648 ETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQ 727
Cdd:COG0542 594 ELAKALAEFLFGDEDALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQ 673
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 728 VFDKGVMEDGEGRVIDFKNTLILLTTNAGTEMIASLCADPelmPEPEAIAKSLREPLLKIFPPALLGRL-VTIPYYPLSD 806
Cdd:COG0542 674 VLDDGRLTDGQGRTVDFRNTIIIMTSNIGSELILDLAEDE---PDYEEMKEAVMEELKKHFRPEFLNRIdEIIVFHPLSK 750
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 807 DMLKAISRLQLGRIKKRVEAtHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREFLTRMLEGKPLagVR 886
Cdd:COG0542 751 EELRKIVDLQLKRLRKRLAE-RGITLELTDAAKDFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDT--IT 827
|
....*...
gi 15595288 887 ISSRDNQF 894
Cdd:COG0542 828 VDVDDGEL 835
|
|
| chaperone_ClpB |
TIGR03346 |
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent ... |
17-894 |
0e+00 |
|
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization]
Pssm-ID: 274529 [Multi-domain] Cd Length: 850 Bit Score: 685.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 17 AYKAIEAATVFCKLRGNPYVELVHWFHQILQLPDSDLHQIVRQSGIDPARLAKDLTEALDRLPRGSTSITD--LSSHVEE 94
Cdd:TIGR03346 5 FQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARPLLQKAGVNVGALRQALEKELERLPKVSGPGGQvyLSPDLNR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 95 AVERGWVYGSLMfGESQVRTGYLVIGILKTPSlrhaltglsaEFAKLKVEAlterfdeyvGASPENGLSASDGFNAGAAp 174
Cdd:TIGR03346 85 LLNLAEKLAQKR-GDEFISSEHLLLALLDDKG----------TLGKLLKEA---------GATADALEAAINAVRGGQK- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 175 geasgALAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRI 254
Cdd:TIGR03346 144 -----VTDANAEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 255 VAGDVPPALKDVELRALDVGLLQAGASMKGEFEQRLRQVIEDVQSSEKPIILFIDEAHTLVGAGGAAGTGDAANLLKPAL 334
Cdd:TIGR03346 219 VNGDVPEGLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 335 ARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHRYIPA 414
Cdd:TIGR03346 299 ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPSVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 415 RQLPDKSVSLLDTACARTAISLHAVPAEVDDSRRRIEALETELAIIRRESaiGVATAERQRNAETLLAEERERLAALEQR 494
Cdd:TIGR03346 379 RFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEK--DEASKKRLEDLEKELADLEEEYAELEEQ 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 495 WAEEKRLVDELLETRARlraaaeavdaggvpLGEGEVRLDEEQRQALHARLAELQ--------AQLSALQGEE-----PL 561
Cdd:TIGR03346 457 WKAEKASIQGIQQIKEE--------------IEQVRLELEQAEREGDLAKAAELQygklpeleKQLQAAEQKLgeeqnRL 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 562 ILPTVDYQAVASVVADWTGIPVGRMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGT 641
Cdd:TIGR03346 523 LREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEELHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGP 602
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 642 SGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDV 721
Cdd:TIGR03346 603 TGVGKTELAKALAEFLFDSEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHPDV 682
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 722 HEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTEMIASLcadPElMPEPEAIAKSLREPLLKIFPPALLGRL-VTIP 800
Cdd:TIGR03346 683 FNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDFIQEL---AG-GDDYEEMREAVMEVLRAHFRPEFLNRIdEIVV 758
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 801 YYPLSDDMLKAISRLQLGRIKKRVeATHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREfltrMLEGK 880
Cdd:TIGR03346 759 FHPLGREQIARIVEIQLGRLRKRL-AERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK----ILAGE 833
|
890
....*....|....*.
gi 15595288 881 PLAG--VRISSRDNQF 894
Cdd:TIGR03346 834 VAPGdtIRVDVEGGRL 849
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
187-825 |
0e+00 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 546.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 187 GKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRIVAGDVPPALKDV 266
Cdd:CHL00095 157 SKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDK 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 267 ELRALDVGLLQAGASMKGEFEQRLRQVIEDVQSSEKpIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATT 346
Cdd:CHL00095 237 LVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNN-IILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATT 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 347 WAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHRYIPARQLPDKSVSLLD 426
Cdd:CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 427 TACARtaislhavpaeVDDSRRRIEALETELAIIRRESAIGVATAERQRNAETlLAEERERlaaleqrwaeekrlvdell 506
Cdd:CHL00095 396 EAGSR-----------VRLINSRLPPAARELDKELREILKDKDEAIREQDFET-AKQLRDR------------------- 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 507 etrarlraaaeavdaggvplgEGEVRldeeqrqalharlAELQAQLSALQGEEPLIL--PTVDYQAVASVVADWTGIPVG 584
Cdd:CHL00095 445 ---------------------EMEVR-------------AQIAAIIQSKKTEEEKRLevPVVTEEDIAEIVSAWTGIPVN 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 585 RMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNV 664
Cdd:CHL00095 491 KLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAM 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 665 ITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRVIDF 744
Cdd:CHL00095 571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDF 650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 745 KNTLILLTTNAGTEMI----ASLCADPELMPEPEAIAKSLR----EPLLKIFPPALLGRL-VTIPYYPLSDDMLKAISRL 815
Cdd:CHL00095 651 KNTLIIMTSNLGSKVIetnsGGLGFELSENQLSEKQYKRLSnlvnEELKQFFRPEFLNRLdEIIVFRQLTKNDVWEIAEI 730
|
650
....*....|
gi 15595288 816 QLGRIKKRVE 825
Cdd:CHL00095 731 MLKNLFKRLN 740
|
|
| PRK10865 |
PRK10865 |
ATP-dependent chaperone ClpB; |
31-825 |
7.94e-180 |
|
ATP-dependent chaperone ClpB;
Pssm-ID: 182791 [Multi-domain] Cd Length: 857 Bit Score: 541.36 E-value: 7.94e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 31 RGNPYVELVHWFHQILQLPDSDLHQIVRQSGIDPARLAKDLTEALDRLPRgstsitdlsshVEEAvergwvYGSLMFGES 110
Cdd:PRK10865 24 HDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQ-----------VEGT------GGDVQPSQD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 111 QVRtgylVIGILKTPSLRHALTGLSAEFAKLKveALTER-----FDEYVGASPENGLSASDGFNAGAAPGEASgalapsA 185
Cdd:PRK10865 87 LVR----VLNLCDKLAQKRGDNFISSELFVLA--ALESRgtladILKAAGATTANITQAIEQMRGGESVNDQG------A 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 186 MGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRIVAGDVPPALKD 265
Cdd:PRK10865 155 EDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 266 VELRALDVGLLQAGASMKGEFEQRLRQVIEDVQSSEKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAAT 345
Cdd:PRK10865 235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGAT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 346 TWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHRYIPARQLPDKSVSLL 425
Cdd:PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLI 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 426 DTACARTAISLHAVPAEVDDSRRRIEALETELAIIRRESaiGVATAERQRNAETLLAEERERLAALEQRWAEEKRlvdEL 505
Cdd:PRK10865 395 DEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKES--DEASKKRLDMLNEELSDKERQYSELEEEWKAEKA---SL 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 506 LETRARLRAaaeavdaggvpLGEGEVRLDEEQRQALHARLAELQ--------AQLSALQGEE----PLILPTVDYQAVAS 573
Cdd:PRK10865 470 SGTQTIKAE-----------LEQAKIAIEQARRVGDLARMSELQygkipeleKQLAAATQLEgktmRLLRNKVTDAEIAE 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 574 VVADWTGIPVGRMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALAL 653
Cdd:PRK10865 539 VLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKAL 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 654 AEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGV 733
Cdd:PRK10865 619 ANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGR 698
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 734 MEDGEGRVIDFKNTLILLTTNAGTEMIASLCADpelMPEPEaiaksLREPLLKI----FPPALLGRL-VTIPYYPLSDDM 808
Cdd:PRK10865 699 LTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGE---LDYAH-----MKELVLGVvshnFRPEFINRIdEVVVFHPLGEQH 770
|
810
....*....|....*..
gi 15595288 809 LKAISRLQLGRIKKRVE 825
Cdd:PRK10865 771 IASIAQIQLQRLYKRLE 787
|
|
| ClpA |
TIGR02639 |
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, ... |
19-873 |
5.09e-164 |
|
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 274241 [Multi-domain] Cd Length: 730 Bit Score: 496.08 E-value: 5.09e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 19 KAIEAATVFCKLRGNPYVELVHWFHQILQlpDSDLHQIVRQSGIDPARLAKDLTEALD-RLPRGSTSITdlsshvEEAVE 97
Cdd:TIGR02639 7 RILSDALEEAKERRHEFVTLEHLLLALLD--DNEAIEILEECGGDVELLRKRLEDYLEeNLPVIPEDID------EEPEQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 98 RGWVYGSLMFGESQVRT-GYLVIGIlktPSLRHALTGLSAEFAK--LKVEALTeRFD--EYVgaspENGLSASDGFNAGA 172
Cdd:TIGR02639 79 TVGVQRVIQRALLHVKSaGKKEIDI---GDLLVALFDEEDSHASyfLKSQGIT-RLDilNYI----SHGISKDDGKDQLG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 173 APGEASGAlapsamGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFAL 252
Cdd:TIGR02639 151 EEAGKEEE------KGQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLAL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 253 RIVAGDVPPALKDVELRALDVGLLQAGASMKGEFEQRLRQVIEDVQSSEKPIiLFIDEAHTLVGA-GGAAGTGDAANLLK 331
Cdd:TIGR02639 225 RIAEGKVPERLKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNAI-LFIDEIHTIVGAgATSGGSMDASNLLK 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 332 PALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHRY 411
Cdd:TIGR02639 304 PALSSGKIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARY 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 412 IPARQLPDKSVSLLDTACARTAISlhavpaevddsrrriealetelaiirresaigvatAERQRNAetllaeererlaal 491
Cdd:TIGR02639 384 INDRFLPDKAIDVIDEAGAAFRLR-----------------------------------PKAKKKA-------------- 414
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 492 eqrwaeekrlvdelletrarlraaaeavdaggvplgegevrldeeqrqalharlaelqaqlsalqgeeplilpTVDYQAV 571
Cdd:TIGR02639 415 -------------------------------------------------------------------------NVNVKDI 421
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 572 ASVVADWTGIPVGRMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETAL 651
Cdd:TIGR02639 422 ENVVAKMAKIPVKTVSSDDREQLKNLEKNLKAKIFGQDEAIDQLVSAIKRSRAGLGDPNKPVGSFLFVGPTGVGKTELAK 501
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 652 ALAEAMyggEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDK 731
Cdd:TIGR02639 502 QLAEEL---GVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 578
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 732 GVMEDGEGRVIDFKNTLILLTTNAGtemiASLCADPELMPEPEAIAKSLREPLLKIFPPALLGRL-VTIPYYPLSDDMLK 810
Cdd:TIGR02639 579 ATLTDNNGRKADFRNVILIMTSNAG----ASEMSKPPIGFGGENRESKSLKAIKKLFSPEFRNRLdAIIHFNDLSEEMAE 654
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15595288 811 AISRLQLGRIKKRVEATHkVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREFL 873
Cdd:TIGR02639 655 KIVKKFLDELQDQLNEKN-IELELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEIL 716
|
|
| clpA |
PRK11034 |
ATP-dependent Clp protease ATP-binding subunit; Provisional |
171-902 |
3.42e-114 |
|
ATP-dependent Clp protease ATP-binding subunit; Provisional
Pssm-ID: 236828 [Multi-domain] Cd Length: 758 Bit Score: 366.85 E-value: 3.42e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 171 GAAPGEASGALAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGF 250
Cdd:PRK11034 148 SQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGL 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 251 ALRIVAGDVPPALKDVELRALDVGLLQAGASMKGEFEQRLRQVIEDVQsSEKPIILFIDEAHTLV-GAGGAAGTGDAANL 329
Cdd:PRK11034 228 AWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE-QDTNSILFIDEIHTIIgAGAASGGQVDAANL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 330 LKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSH 409
Cdd:PRK11034 307 IKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAV 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 410 RYIPARQLPDKSVSLLDTACARTAIslhaVPAEvddsrrriealetelaiiRRESAIGVATAErqrnaetllaeererla 489
Cdd:PRK11034 387 KYINDRHLPDKAIDVIDEAGARARL----MPVS------------------KRKKTVNVADIE----------------- 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 490 aleqrwaeekrlvdelletrarlraaaeavdaggvplgegevrldeeqrqalharlaelqaqlsalqgeeplilptvdyq 569
Cdd:PRK11034 --------------------------------------------------------------------------------
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 570 avaSVVADWTGIPVGRMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTET 649
Cdd:PRK11034 428 ---SVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEV 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 650 ALALAEAMyggEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVF 729
Cdd:PRK11034 505 TVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 730 DKGVMEDGEGRVIDFKNTLILLTTNAGTEmiaslcadpelmpepEAIAKSL-----------REPLLKIFPPALLGRLVT 798
Cdd:PRK11034 582 DNGTLTDNNGRKADFRNVVLVMTTNAGVR---------------ETERKSIglihqdnstdaMEEIKKIFTPEFRNRLDN 646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 799 IPYY-PLSDDMLKAISRLQLGRIKKRVEAtHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREFLTRML 877
Cdd:PRK11034 647 IIWFdHLSTDVIHQVVDKFIVELQAQLDQ-KGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSL 725
|
730 740
....*....|....*....|....*
gi 15595288 878 EGKPLAGVRISSRDNQFHYDFAEAE 902
Cdd:PRK11034 726 VDGGQVTVALDKEKNELTYGFQSAQ 750
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
594-802 |
2.13e-90 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 284.07 E-value: 2.13e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 594 VLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQ 673
Cdd:cd19499 2 LLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEYM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 674 EAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTT 753
Cdd:cd19499 82 EKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMTS 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 15595288 754 NAgtemiaslcadpelmpepeaiakslrepllkiFPPALLGRLVTIPYY 802
Cdd:cd19499 162 NH--------------------------------FRPEFLNRIDEIVVF 178
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
631-796 |
2.82e-71 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 232.47 E-value: 2.82e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 631 KPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVL 710
Cdd:pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 711 LDEVEKAHPDVHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTEMIASLCADPElMPEPEAIAKSLREPLLKIFPP 790
Cdd:pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDASRLGD-SPDYELLKEEVMDLLKKGFIP 159
|
....*.
gi 15595288 791 ALLGRL 796
Cdd:pfam07724 160 EFLGRL 165
|
|
| AAA_lid_9 |
pfam17871 |
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ... |
373-478 |
3.52e-38 |
|
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.
Pssm-ID: 465544 [Multi-domain] Cd Length: 104 Bit Score: 137.62 E-value: 3.52e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 373 SEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHRYIPARQLPDKSVSLLDTACARTAISLHAVPAEVDDSRRRIEA 452
Cdd:pfam17871 1 SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARVRLSQESKPEELEDLERELAK 80
|
90 100
....*....|....*....|....*.
gi 15595288 453 LETELAIIRRESAIgvATAERQRNAE 478
Cdd:pfam17871 81 LEIEKEALEREQDF--EKAERLAKLE 104
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
606-754 |
1.12e-14 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 72.18 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 606 IGQDHALEMIAKRIQTsragldNPSKPIgvfMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVStlkgap 685
Cdd:cd00009 1 VGQEEAIEALREALEL------PPPKNL---LLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA------ 65
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15595288 686 pGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQvfdkgVMEDGEGRVIDFKNTLILLTTN 754
Cdd:cd00009 66 -ELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLR-----VLETLNDLRIDRENVRVIGATN 128
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
212-367 |
1.88e-14 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 71.41 E-value: 1.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 212 VGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRIVAGDVPpalkdveLRALDVGLLQAGASMKGEFEQRLR 291
Cdd:cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAP-------FLYLNASDLLEGLVVAELFGHFLV 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15595288 292 QVIEDVQSSEKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYkkhIEKDPALTRRFQVV 367
Cdd:cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146
|
|
| ClpB_D2-small |
smart01086 |
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ... |
804-894 |
2.53e-12 |
|
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.
Pssm-ID: 198154 [Multi-domain] Cd Length: 90 Bit Score: 63.23 E-value: 2.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 804 LSDDMLKAISRLQLGRIKKRVeATHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREFLTRMLEGKPLa 883
Cdd:smart01086 1 LDKEDLVRIVDLPLNALQKRL-AEKGITLEFTDEALDWLAEKGYDPKYGARPLRRIIQRELEDPLAELILSGELKDGDT- 78
|
90
....*....|.
gi 15595288 884 gVRISSRDNQF 894
Cdd:smart01086 79 -VVVDVDDGEL 88
|
|
| ClpB_D2-small |
pfam10431 |
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ... |
804-878 |
3.31e-11 |
|
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerization, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Pssm-ID: 463090 [Multi-domain] Cd Length: 81 Bit Score: 60.11 E-value: 3.31e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15595288 804 LSDDMLKAISRLQLGRIKKRVEAtHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREFLTRMLE 878
Cdd:pfam10431 1 LSKEELRKIVDLQLKELQKRLAE-RGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELK 74
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
634-770 |
3.51e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 59.31 E-value: 3.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 634 GVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGG----VLTEAVRRKPYSVV 709
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGElrlrLALALARKLKPDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15595288 710 LLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRvidFKNTLILLTTNAGT---EMIASLCADPELM 770
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKS---EKNLTVILTTNDEKdlgPALLRRRFDRRIV 143
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
636-754 |
3.14e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 56.15 E-value: 3.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 636 FMLAGTSGVGKTETALALAEAMYGgeQNVITINMSEFQeahTVSTLKGA--PPGYIGYGEGGVLTEAVRRKpySVVLLDE 713
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLAAALSN--RPVFYVQLTRDT---TEEDLFGRrnIDPGGASWVDGPLVRAAREG--EIAVLDE 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15595288 714 VEKAHPDVHEIFFQVFDKGVMEDGEGR-VIDFKNTLILL--TTN 754
Cdd:pfam07728 75 INRANPDVLNSLLSLLDERRLLLPDGGeLVKAAPDGFRLiaTMN 118
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
210-312 |
2.72e-07 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 51.35 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 210 PIVGRDEEIRQLVDILMRRRQNNP---ILTGEAGVGKTAVVEGFALRIVA------------------------------ 256
Cdd:pfam13191 1 RLVGREEELEQLLDALDRVRSGRPpsvLLTGEAGTGKTTLLRELLRALERdggyflrgkcdenlpyspllealtregllr 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15595288 257 --GDVPPALKDVELRALDVGLLQAGASMKGEFEQRLRQVIEDV----QSSEKPIILFIDEAH 312
Cdd:pfam13191 81 qlLDELESSLLEAWRAALLEALAPVPELPGDLAERLLDLLLRLldllARGERPLVLVLDDLQ 142
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
234-368 |
6.82e-07 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 49.13 E-value: 6.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 234 ILTGEAGVGKTAVVegfalRIVAGDVppalkDVELRALDVGLLqaGASMKGEFEQRLRQVIEDVQSSeKPIILFIDEAHT 313
Cdd:pfam00004 2 LLYGPPGTGKTTLA-----KAVAKEL-----GAPFIEISGSEL--VSKYVGESEKRLRELFEAAKKL-APCVIFIDEIDA 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15595288 314 LV---GAGGAAGTGDAANLLKPALARGTLRT-----VAATTwaeykkHIEK-DPALTRRFQVVQ 368
Cdd:pfam00004 69 LAgsrGSGGDSESRRVVNQLLTELDGFTSSNskvivIAATN------RPDKlDPALLGRFDRII 126
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
229-370 |
3.01e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.75 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 229 RQNNPILTGEAGVGKTAVVEGFALRIVAGDVPPALKDVE-----LRALDVGLLQAGASMKGEFEQRLRQVIEDVQSSeKP 303
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEdileeVLDQLLLIIVGGKKASGSGELRLRLALALARKL-KP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15595288 304 IILFIDEAHTL--VGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVD 370
Cdd:smart00382 80 DVLILDEITSLldAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
56-412 |
9.72e-06 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 48.75 E-value: 9.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 56 IVRQSGIDPARLAKDLTEALDRLPRGSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVIGILKTPSLRHALTGLS 135
Cdd:COG0464 4 LLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 136 AEFAKLKVEALTERFDEYVGASPENGLSASDGFNAGAAPGEASGALAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRD 215
Cdd:COG0464 84 ALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELREAILDDLGGLE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 216 EEIRQLVDIL--------MRRRQNNP-----ILTGEAGVGKTAVVegfalRIVAGDVppalkDVELRALDVGLLqagASM 282
Cdd:COG0464 164 EVKEELRELValplkrpeLREEYGLPpprglLLYGPPGTGKTLLA-----RALAGEL-----GLPLIEVDLSDL---VSK 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 283 K-GEFEQRLRQVIEDVQSSEkPIILFIDEAHTLVGAGGaagtgdaanllkpALARGTLRTVAAT--TWAEYKK------- 352
Cdd:COG0464 231 YvGETEKNLREVFDKARGLA-PCVLFIDEADALAGKRG-------------EVGDGVGRRVVNTllTEMEELRsdvvvia 296
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15595288 353 ---HIEK-DPALTRRFQ-VVQVDEPSEH--KAILmmRGVASTMEKHHQVQiLDEALEAAVRLSHRYI 412
Cdd:COG0464 297 atnRPDLlDPALLRRFDeIIFFPLPDAEerLEIF--RIHLRKRPLDEDVD-LEELAEATEGLSGADI 360
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
637-754 |
1.06e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 42.97 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 637 MLAGTSGVGKTETALALAEAMYGgeqNVITINMSEFqeahtVSTLKGAPPGYIgygeGGVLTEAVRRKPySVVLLDEVEK 716
Cdd:pfam00004 2 LLYGPPGTGKTTLAKAVAKELGA---PFIEISGSEL-----VSKYVGESEKRL----RELFEAAKKLAP-CVIFIDEIDA 68
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15595288 717 AHPDVHEIFFQVFDKGV------MEDGEgrvIDFKNTLILLTTN 754
Cdd:pfam00004 69 LAGSRGSGGDSESRRVVnqllteLDGFT---SSNSKVIVIAATN 109
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
208-412 |
1.72e-04 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 44.10 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 208 LDPIVGRDEEIRQLVDILM-RRRQNNP-----------ILTGEAGVGKTAVVEGFALRIvagDVPpaLKDVELRALDvgl 275
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIKeLRRRENLrkfglwpprkiLFYGPPGTGKTMLAEALAGEL---KLP--LLTVRLDSLI--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 276 lqagASMKGEFEQRLRQVIEdvQSSEKPIILFIDEAHTLvgaggaagtgdaanllkpALAR------GTLR--------- 340
Cdd:COG1223 73 ----GSYLGETARNLRKLFD--FARRAPCVIFFDEFDAI------------------AKDRgdqndvGEVKrvvnallqe 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 341 ---------TVAATTwaeykkHIEK-DPALTRRFQ-VVQVDEPS--EHKAIL--MMRGVASTMEKHhqvqiLDEALEAAV 405
Cdd:COG1223 129 ldglpsgsvVIAATN------HPELlDSALWRRFDeVIEFPLPDkeERKEILelNLKKFPLPFELD-----LKKLAKKLE 197
|
....*..
gi 15595288 406 RLSHRYI 412
Cdd:COG1223 198 GLSGADI 204
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
235-314 |
1.87e-04 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 44.01 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 235 LTGEAGVGKTAVVEGFALRI----VAGDVP-PALKDVELR---ALDVGLLQAGASmKGEFEQRLRQVIEDVQSSEKPIIL 306
Cdd:COG3267 48 LTGEVGTGKTTLLRRLLERLpddvKVAYIPnPQLSPAELLraiADELGLEPKGAS-KADLLRQLQEFLLELAAAGRRVVL 126
|
....*...
gi 15595288 307 FIDEAHTL 314
Cdd:COG3267 127 IIDEAQNL 134
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
445-559 |
2.51e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 445 DSRRRIEALETELAIIRRESAIGVATAERQRNAETLLAEERERLAALEQRWAEEKRlVDELLETRARLRAAAEAVDAGGv 524
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID-VASAEREIAELEAELERLDASS- 684
|
90 100 110
....*....|....*....|....*....|....*
gi 15595288 525 plgeGEVRLDEEQRQALHARLAELQAQLSALQGEE 559
Cdd:COG4913 685 ----DDLAALEEQLEELEAELEELEEELDELKGEI 715
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
609-770 |
2.54e-04 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 42.27 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 609 DHALEMIAKRIQTSRAGLDNPSKPIGVfMLAGTSGVGKTETALALAeamygGEQNV--ITINMSEFQEAhtvstlkgapp 686
Cdd:cd19481 3 ASLREAVEAPRRGSRLRRYGLGLPKGI-LLYGPPGTGKTLLAKALA-----GELGLplIVVKLSSLLSK----------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 687 gYIGYGEGGV--LTEAVRRKPYSVVLLDEVEKA--------HPDVHEIFFQVFDKgVMEDGEGRvidfKNTLILLTTNAG 756
Cdd:cd19481 66 -YVGESEKNLrkIFERARRLAPCILFIDEIDAIgrkrdssgESGELRRVLNQLLT-ELDGVNSR----SKVLVIAATNRP 139
|
170
....*....|....
gi 15595288 757 TEMiaslcaDPELM 770
Cdd:cd19481 140 DLL------DPALL 147
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
447-555 |
3.37e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 447 RRRIEALETELAIIRRESAIGVATAERQRNAETLLAEERERLAALEQRWAEEKRLVDEL---LETRARLRAAAEAVDAGG 523
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALeeqLEAEREELLEELLEEEEL 747
|
90 100 110
....*....|....*....|....*....|..
gi 15595288 524 VPLGEGEVRLDEEQRQALHARLAELQAQLSAL 555
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
599-719 |
6.76e-04 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 43.37 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 599 RHLKKrIIGQDHALEMIAKRIQTSRAGldNPSKPIgvfMLAGTSGVGKTETALALAEAmYGGEqnVITINMSEF------ 672
Cdd:PRK04195 11 KTLSD-VVGNEKAKEQLREWIESWLKG--KPKKAL---LLYGPPGVGKTSLAHALAND-YGWE--VIELNASDQrtadvi 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 15595288 673 ----QEAHTVSTLKGAppgyigygeggvlteavRRKpysVVLLDEVEKAHP 719
Cdd:PRK04195 82 ervaGEAATSGSLFGA-----------------RRK---LILLDEVDGIHG 112
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
441-716 |
1.17e-03 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 42.21 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 441 AEVDDSRRRIEALETELAIIRRESAIGVATAERQRNAETLLAEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVD 520
Cdd:COG0464 1 LAELLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 521 AGGVPLGEGEVRLDEEQRQALHARLAELQAQLSALQGEEPLILPTVDYQAVASVVADWTGIPVGRMARNEIETVL----- 595
Cdd:COG0464 81 LLAALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELREAIlddlg 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 596 ---NLDRHLKKRIIGQDHALEMIAkriqtsRAGLDNPSKpigvFMLAGTSGVGKTETALALAEAMyGGeqNVITINMSEF 672
Cdd:COG0464 161 gleEVKEELRELVALPLKRPELRE------EYGLPPPRG----LLLYGPPGTGKTLLARALAGEL-GL--PLIEVDLSDL 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 15595288 673 qeahtVStlkgappGYIGYGEGGV--LTEAVRRKPYSVVLLDEVEK 716
Cdd:COG0464 228 -----VS-------KYVGETEKNLreVFDKARGLAPCVLFIDEADA 261
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
209-248 |
1.50e-03 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 41.85 E-value: 1.50e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 15595288 209 DPIVGRDEEIRQLVDIL---MR-RRQNNPILTGEAGVGKTAVVE 248
Cdd:TIGR02928 15 DRIVHRDEQIEELAKALrpiLRgSRPSNVFIYGKTGTGKTAVTK 58
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
441-561 |
1.52e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 441 AEVDDSRRRIEALETELAIIRRESAI-------GVATAERQRNAETLLA---EERERLAALEQRWAEEKRLVDELLETRA 510
Cdd:COG4717 347 EELQELLREAEELEEELQLEELEQEIaallaeaGVEDEEELRAALEQAEeyqELKEELEELEEQLEELLGELEELLEALD 426
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 15595288 511 RLRAAAEAVDAggvplgEGEVRLDEEQRQALHARLAELQAQLSALQGEEPL 561
Cdd:COG4717 427 EEELEEELEEL------EEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
211-247 |
1.69e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 41.76 E-value: 1.69e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 15595288 211 IVGRDEEIRQLVDIL----MRRRQNNPILTGEAGVGKTAVV 247
Cdd:COG1474 28 LPHREEEIEELASALrpalRGERPSNVLIYGPTGTGKTAVA 68
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
43-259 |
2.07e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 42.15 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 43 HQILQLPDSDLHQIVRQSGIDPARLAKDLTEALDRLPRGSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVIGIL 122
Cdd:COG3899 124 LALLLALLLAAGVLGLLLGGLLLAALAALLALAALAAAAAAAAAAAAARAARLRRARAARLAALALRALLLLVLLLLLLL 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 123 KTPSLRHALTGLSAEFAKLKVEALTERFDEYVGASPENGLSASDGFNAGAAPGEASGALAPSAMGKQEALKRFTVDLTEQ 202
Cdd:COG3899 204 LLLGLLLAAAAALAAAAAAAAAAAPAAPVVLVAALLLALAALLALLLLAARLLGLAGAAALLLLGLLAAAAAGRRLLARR 283
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 203 ARSGKLdpiVGRDEEIRQLVDILMRRRQNNP---ILTGEAGVGKTAVVEGFALRIVAGDV 259
Cdd:COG3899 284 LIPQPL---VGREAELAALLAALERARAGRGelvLVSGEAGIGKSRLVRELARRARARGG 340
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
226-314 |
2.08e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.25 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 226 MRRRQNNPILTGEAGVGKTAVVEGFALRIVAGDV---------PPALKDVeLRALdVGLLQAGASMKGEFEQRLRQVIED 296
Cdd:pfam13401 1 IRFGAGILVLTGESGTGKTTLLRRLLEQLPEVRDsvvfvdlpsGTSPKDL-LRAL-LRALGLPLSGRLSKEELLAALQQL 78
|
90
....*....|....*...
gi 15595288 297 VQSSEKPIILFIDEAHTL 314
Cdd:pfam13401 79 LLALAVAVVLIIDEAQHL 96
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
441-559 |
3.51e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 441 AEVDDSRRRIEALETELAIIRRESAigvATAERQRNAETLLAEERERLAALEQR----WAEEKRLVDELLETrarlraaa 516
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELE---ELEAELAELEAELEELRLELEELELEleeaQAEEYELLAELARL-------- 300
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 15595288 517 eavdaggvplgEGEVRLDEEQRQALHARLAELQAQLSALQGEE 559
Cdd:COG1196 301 -----------EQDIARLEERRRELEERLEELEEELAELEEEL 332
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
441-558 |
5.87e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 441 AEVDDSRRRIEALETELAIIRRESAIGVATAERQRnAETLLAEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVD 520
Cdd:COG4717 102 EELEELEAELEELREELEKLEKLLQLLPLYQELEA-LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE 180
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 15595288 521 AGGVPLG---EGEVRLDEEQRQALHARLAELQAQLSALQGE 558
Cdd:COG4717 181 ELLEQLSlatEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
442-558 |
6.04e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 442 EVDDSRRRIEALETELAIIRRESAiGVATAERQ--------RNAETLLAEERERLAALEQRWAEEKRLVDEL---LETRA 510
Cdd:COG4913 662 DVASAEREIAELEAELERLDASSD-DLAALEEQleeleaelEELEEELDELKGEIGRLEKELEQAEEELDELqdrLEAAE 740
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 15595288 511 RLRAAAEAVDAGGVPLGEGEVRLDEEQRQALHARLAELQAQLSALQGE 558
Cdd:COG4913 741 DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| Zeta_toxin |
pfam06414 |
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ... |
629-676 |
7.19e-03 |
|
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Pssm-ID: 428926 Cd Length: 192 Bit Score: 38.50 E-value: 7.19e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 15595288 629 PSKPIGVFMlAGTSGVGKTETALALAEAMYGGEqNVITINMSEFQEAH 676
Cdd:pfam06414 8 QERPKAILL-GGQPGAGKTELARALLDELGRQG-NVVRIDPDDFRELH 53
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
393-556 |
7.28e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 393 QVQILDEALEAAVRLSHRYIPARQLpDKSVSLLDTACARTAISLHAvpAEVDDSRRRIEALETELAiiRRESAIGVATAE 472
Cdd:COG4913 250 QIELLEPIRELAERYAAARERLAEL-EYLRAALRLWFAQRRLELLE--AELEELRAELARLEAELE--RLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595288 473 RQRNAETLLAEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAgGVPLGEGEVrldEEQRQALHARLAELQAQL 552
Cdd:COG4913 325 LDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGL-PLPASAEEF---AALRAEAAALLEALEEEL 400
|
....
gi 15595288 553 SALQ 556
Cdd:COG4913 401 EALE 404
|
|
| |
