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Conserved domains on  [gi|15595258|ref|NP_248750|]
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hypothetical protein PA0060 [Pseudomonas aeruginosa PAO1]

Protein Classification

DUF1161 domain-containing protein( domain architecture ID 10535229)

DUF1161 domain-containing protein similar to Escherichia coli YnfD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1161 pfam06649
Protein of unknown function (DUF1161); This family consists of several short, hypothetical ...
 24-74 2.63e-23

Protein of unknown function (DUF1161); This family consists of several short, hypothetical bacterial proteins of unknown function.


:

Pssm-ID: 429051  Cd Length: 52  Bit Score: 83.19  E-value: 2.63e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15595258   24 CEELKAEIETKIQSAGVTSYTLEIVRNDEV-SDPNMVVGSCENGTKKIIYQK 74
Cdd:pfam06649  1 CEELKAEIDAKIQANGVTSYTLEIVPNDEAvQASGKVVGSCENGTKKIVYQR 52
 
Name Accession Description Interval E-value
DUF1161 pfam06649
Protein of unknown function (DUF1161); This family consists of several short, hypothetical ...
 24-74 2.63e-23

Protein of unknown function (DUF1161); This family consists of several short, hypothetical bacterial proteins of unknown function.


Pssm-ID: 429051  Cd Length: 52  Bit Score: 83.19  E-value: 2.63e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15595258   24 CEELKAEIETKIQSAGVTSYTLEIVRNDEV-SDPNMVVGSCENGTKKIIYQK 74
Cdd:pfam06649  1 CEELKAEIDAKIQANGVTSYTLEIVPNDEAvQASGKVVGSCENGTKKIVYQR 52
 
Name Accession Description Interval E-value
DUF1161 pfam06649
Protein of unknown function (DUF1161); This family consists of several short, hypothetical ...
 24-74 2.63e-23

Protein of unknown function (DUF1161); This family consists of several short, hypothetical bacterial proteins of unknown function.


Pssm-ID: 429051  Cd Length: 52  Bit Score: 83.19  E-value: 2.63e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15595258   24 CEELKAEIETKIQSAGVTSYTLEIVRNDEV-SDPNMVVGSCENGTKKIIYQK 74
Cdd:pfam06649  1 CEELKAEIDAKIQANGVTSYTLEIVPNDEAvQASGKVVGSCENGTKKIVYQR 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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