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ARM repeat superfamily protein [Arabidopsis thaliana]
exportin/importin beta family protein( domain architecture ID 10658450)
exportin/importin beta family protein such as human exportin-T, which mediates the nuclear export of aminoacylated tRNAs or transportin-3 (importin), which transports target proteins into the nucleus
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Xpo1 | pfam08389 | Exportin 1-like protein; The sequences featured in this family are similar to a region close ... |
98-243 | 7.16e-25 | |||
Exportin 1-like protein; The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. : Pssm-ID: 462459 Cd Length: 147 Bit Score: 101.15 E-value: 7.16e-25
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IBN_N | smart00913 | Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can ... |
26-91 | 1.74e-06 | |||
Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. : Pssm-ID: 197981 [Multi-domain] Cd Length: 67 Bit Score: 46.08 E-value: 1.74e-06
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Name | Accession | Description | Interval | E-value | ||||||
Xpo1 | pfam08389 | Exportin 1-like protein; The sequences featured in this family are similar to a region close ... |
98-243 | 7.16e-25 | ||||||
Exportin 1-like protein; The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Pssm-ID: 462459 Cd Length: 147 Bit Score: 101.15 E-value: 7.16e-25
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IBN_N | smart00913 | Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can ... |
26-91 | 1.74e-06 | ||||||
Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Pssm-ID: 197981 [Multi-domain] Cd Length: 67 Bit Score: 46.08 E-value: 1.74e-06
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IBN_N | pfam03810 | Importin-beta N-terminal domain; |
26-91 | 3.00e-03 | ||||||
Importin-beta N-terminal domain; Pssm-ID: 397745 [Multi-domain] Cd Length: 72 Bit Score: 37.22 E-value: 3.00e-03
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CRM1 | COG5101 | Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular ... |
15-343 | 4.36e-03 | ||||||
Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]; Pssm-ID: 227432 [Multi-domain] Cd Length: 1053 Bit Score: 41.08 E-value: 4.36e-03
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Name | Accession | Description | Interval | E-value | ||||||
Xpo1 | pfam08389 | Exportin 1-like protein; The sequences featured in this family are similar to a region close ... |
98-243 | 7.16e-25 | ||||||
Exportin 1-like protein; The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Pssm-ID: 462459 Cd Length: 147 Bit Score: 101.15 E-value: 7.16e-25
|
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IBN_N | smart00913 | Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can ... |
26-91 | 1.74e-06 | ||||||
Importin-beta N-terminal domain; Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Pssm-ID: 197981 [Multi-domain] Cd Length: 67 Bit Score: 46.08 E-value: 1.74e-06
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IBN_N | pfam03810 | Importin-beta N-terminal domain; |
26-91 | 3.00e-03 | ||||||
Importin-beta N-terminal domain; Pssm-ID: 397745 [Multi-domain] Cd Length: 72 Bit Score: 37.22 E-value: 3.00e-03
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CRM1 | COG5101 | Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular ... |
15-343 | 4.36e-03 | ||||||
Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]; Pssm-ID: 227432 [Multi-domain] Cd Length: 1053 Bit Score: 41.08 E-value: 4.36e-03
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Blast search parameters | ||||
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