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Conserved domains on  [gi|15241796|ref|NP_201038|]
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myb domain protein 99 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 3-180 2.87e-65

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 209.45  E-value: 2.87e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796    3 GRKPCCDEVGLRKGPWTVEEDGKLVDFLRARGNCggggggwCWRDVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLFTEEE 82
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHG-------CWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQE 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796   83 IQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHIKRKLIRMGIDPNTHrrfdqqkvneeetilvndpKPLSETE-- 160
Cdd:PLN03091  75 ENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTH-------------------KPLSEVEng 135

                        170       180
                 ....*....|....*....|....*
gi 15241796  161 -----VSVALKNDTSAVLSGNLNQL 180
Cdd:PLN03091 136 edknpPTDDKSDKASSVVSNELNLL 160
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 3-180 2.87e-65

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 209.45  E-value: 2.87e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796    3 GRKPCCDEVGLRKGPWTVEEDGKLVDFLRARGNCggggggwCWRDVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLFTEEE 82
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHG-------CWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQE 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796   83 IQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHIKRKLIRMGIDPNTHrrfdqqkvneeetilvndpKPLSETE-- 160
Cdd:PLN03091  75 ENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTH-------------------KPLSEVEng 135

                        170       180
                 ....*....|....*....|....*
gi 15241796  161 -----VSVALKNDTSAVLSGNLNQL 180
Cdd:PLN03091 136 edknpPTDDKSDKASSVVSNELNLL 160
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 75-120 2.28e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.91  E-value: 2.28e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15241796    75 RGLFTEEEIQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHI 120
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 55-147 1.45e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 69.43  E-value: 1.45e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796  55 RRCGKSCRLRWTNYLRPDLKRGLFTEEEIQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHIKRKLIRMGIDPNTH 134
Cdd:COG5147  52 SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRR 131

                        90
                ....*....|...
gi 15241796 135 RRFDQQKVNEEET 147
Cdd:COG5147 132 NEFDKIDPFNENS 144
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
75-122 9.27e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.39  E-value: 9.27e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15241796     75 RGLFTEEEIQLVIDLHARLG-NRWSKIAVELPGRTDNDIKNYWNTHIKR 122
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 78-120 1.82e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.59  E-value: 1.82e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 15241796  78 FTEEEIQLVIDLHARLG-NRWSKIAVELPGRTDNDIKNYWNTHI 120
Cdd:cd00167   2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 3-180 2.87e-65

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 209.45  E-value: 2.87e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796    3 GRKPCCDEVGLRKGPWTVEEDGKLVDFLRARGNCggggggwCWRDVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLFTEEE 82
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHG-------CWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQE 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796   83 IQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHIKRKLIRMGIDPNTHrrfdqqkvneeetilvndpKPLSETE-- 160
Cdd:PLN03091  75 ENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTH-------------------KPLSEVEng 135

                        170       180
                 ....*....|....*....|....*
gi 15241796  161 -----VSVALKNDTSAVLSGNLNQL 180
Cdd:PLN03091 136 edknpPTDDKSDKASSVVSNELNLL 160
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 2-170 5.83e-57

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 181.81  E-value: 5.83e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796    2 GGRKP-------CCDEVGLRKGPWTVEEDGKLVDFLRARGNCGgggggwcWRDVPKLAGLRRCGKSCRLRWTNYLRPDLK 74
Cdd:PLN03212   5 GGKKPvskkttpCCTKMGMKRGPWTVEEDEILVSFIKKEGEGR-------WRSLPKRAGLLRCGKSCRLRWMNYLRPSVK 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796   75 RGLFTEEEIQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHIKRKLIRMGIDPNTHRRFDQQKVNE-EETILVNDP 153
Cdd:PLN03212  78 RGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIHKpEEEVSGGQK 157

                        170
                 ....*....|....*..
gi 15241796  154 KPLSetEVSVALKNDTS 170
Cdd:PLN03212 158 YPIE--PISSSHTDDTT 172
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 75-120 2.28e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.91  E-value: 2.28e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15241796    75 RGLFTEEEIQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHI 120
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 55-147 1.45e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 69.43  E-value: 1.45e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241796  55 RRCGKSCRLRWTNYLRPDLKRGLFTEEEIQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHIKRKLIRMGIDPNTH 134
Cdd:COG5147  52 SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRR 131

                        90
                ....*....|...
gi 15241796 135 RRFDQQKVNEEET 147
Cdd:COG5147 132 NEFDKIDPFNENS 144
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
75-122 9.27e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.39  E-value: 9.27e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15241796     75 RGLFTEEEIQLVIDLHARLG-NRWSKIAVELPGRTDNDIKNYWNTHIKR 122
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 78-120 1.82e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.59  E-value: 1.82e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 15241796  78 FTEEEIQLVIDLHARLG-NRWSKIAVELPGRTDNDIKNYWNTHI 120
Cdd:cd00167   2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 15-69 1.64e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 49.42  E-value: 1.64e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15241796    15 KGPWTVEEDGKLVDFLRARGNCggggggwcWRDVPKLAGlRRCGKSCRLRWTNYL 69
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNR--------WKKIAKLLP-GRTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 78-124 6.96e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 45.38  E-value: 6.96e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15241796    78 FTEEEIQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHIKRKL 124
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 18-86 1.81e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 44.22  E-value: 1.81e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15241796    18 WTVEEDGKLVDFLRARGNCggggggwcWRDVPKLAGlRRCGKSCRLRWTNYLRPDLKRGLFTEEEIQLV 86
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND--------WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
15-71 2.70e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 37.59  E-value: 2.70e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 15241796     15 KGPWTVEEDGKLVDFLRARGNCggggggwCWRDVPKLAGlRRCGKSCRLRWTNYLRP 71
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKN-------NWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-69 2.76e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 34.86  E-value: 2.76e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 15241796  17 PWTVEEDGKLVDFLRARGNCggggggwCWRDVPKLAGlRRCGKSCRLRWTNYL 69
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKN-------NWEKIAKELP-GRTPKQCRERWRNLL 45
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 71-110 9.10e-03

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 33.44  E-value: 9.10e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 15241796  71 PDLKRGLFTEEEIQLVIDLHARLGNRWSKIAvELPGRTDN 110
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIA-PIVGRTAQ 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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