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Conserved domains on  [gi|15241692|ref|NP_201013|]
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IQ-domain 23 [Arabidopsis thaliana]

Protein Classification

IQ and DUF4005 domain-containing protein( domain architecture ID 10635720)

IQ and DUF4005 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4005 super family cl16148
Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing ...
286-399 5.17e-12

Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins.


The actual alignment was detected with superfamily member pfam13178:

Pssm-ID: 404128  Cd Length: 97  Bit Score: 61.87  E-value: 5.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241692   286 GSSGSRRRTPFTPTSrseyswgcnnyyysGYHPNYMANTESYKAKVRSQSAPKQRVevsnETSGYKRSvqgqyyyYTAVE 365
Cdd:pfam13178  10 YSSSGTSNTPFTPSR--------------SSLPNYMAATESAKAKLRSQSAPRQRP----STPERDRS-------GSAAK 64
                          90       100       110
                  ....*....|....*....|....*....|....
gi 15241692   366 EESLDVGSAGYYGGGGGDSDRlNRNQSAKSRMHS 399
Cdd:pfam13178  65 RLSLPAPSPNGKGSSYGPRAR-QVQASYKHSLRS 97
IQCD cd23767
IQ (isoleucine-glutamine) motif containing D (IQCD); IQCD, also called dynein regulatory ...
111-144 6.46e-05

IQ (isoleucine-glutamine) motif containing D (IQCD); IQCD, also called dynein regulatory complex protein 10 (DRC10), belongs to the IQ motif-containing protein family which contains a C-terminal conserved IQ motif domain and two coiled-coil domains. The IQ motif ([ILV]QxxxRxxxx[RK]), where x stands for any amino-acid residue, interacts with calmodulin (CaM) in a calcium-independent manner and is present in proteins with a wide diversity of biological functions. The IQCD protein was found to primarily accumulate in the acrosome area of round and elongating spermatids of the testis during late stage of spermiogenesis and was then localized to the acrosome and tail regions of mature spermatozoa. The expression of IQCD follows the trajectory of acrosome development during spermatogenesis. IQCD is associated with neuroblastoma and neurodegenerative diseases, and is reported to interact with the nuclear retinoid X receptor in the presence of 9-cis-retinoic acid, thereby activating the transcriptional activity of the receptor.


:

Pssm-ID: 467745 [Multi-domain]  Cd Length: 37  Bit Score: 39.83  E-value: 6.46e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 15241692 111 RRWAQENIAAMKIQSAFRGYLARRALRALKALVK 144
Cdd:cd23767   3 EELQRMNRAATLIQALWRGYKVRKELKKKKKKGK 36
 
Name Accession Description Interval E-value
DUF4005 pfam13178
Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing ...
286-399 5.17e-12

Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins.


Pssm-ID: 404128  Cd Length: 97  Bit Score: 61.87  E-value: 5.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241692   286 GSSGSRRRTPFTPTSrseyswgcnnyyysGYHPNYMANTESYKAKVRSQSAPKQRVevsnETSGYKRSvqgqyyyYTAVE 365
Cdd:pfam13178  10 YSSSGTSNTPFTPSR--------------SSLPNYMAATESAKAKLRSQSAPRQRP----STPERDRS-------GSAAK 64
                          90       100       110
                  ....*....|....*....|....*....|....
gi 15241692   366 EESLDVGSAGYYGGGGGDSDRlNRNQSAKSRMHS 399
Cdd:pfam13178  65 RLSLPAPSPNGKGSSYGPRAR-QVQASYKHSLRS 97
IQCD cd23767
IQ (isoleucine-glutamine) motif containing D (IQCD); IQCD, also called dynein regulatory ...
111-144 6.46e-05

IQ (isoleucine-glutamine) motif containing D (IQCD); IQCD, also called dynein regulatory complex protein 10 (DRC10), belongs to the IQ motif-containing protein family which contains a C-terminal conserved IQ motif domain and two coiled-coil domains. The IQ motif ([ILV]QxxxRxxxx[RK]), where x stands for any amino-acid residue, interacts with calmodulin (CaM) in a calcium-independent manner and is present in proteins with a wide diversity of biological functions. The IQCD protein was found to primarily accumulate in the acrosome area of round and elongating spermatids of the testis during late stage of spermiogenesis and was then localized to the acrosome and tail regions of mature spermatozoa. The expression of IQCD follows the trajectory of acrosome development during spermatogenesis. IQCD is associated with neuroblastoma and neurodegenerative diseases, and is reported to interact with the nuclear retinoid X receptor in the presence of 9-cis-retinoic acid, thereby activating the transcriptional activity of the receptor.


Pssm-ID: 467745 [Multi-domain]  Cd Length: 37  Bit Score: 39.83  E-value: 6.46e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 15241692 111 RRWAQENIAAMKIQSAFRGYLARRALRALKALVK 144
Cdd:cd23767   3 EELQRMNRAATLIQALWRGYKVRKELKKKKKKGK 36
IQ smart00015
Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln ...
115-137 8.85e-04

Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln residues.


Pssm-ID: 197470 [Multi-domain]  Cd Length: 23  Bit Score: 36.15  E-value: 8.85e-04
                           10        20
                   ....*....|....*....|...
gi 15241692    115 QENIAAMKIQSAFRGYLARRALR 137
Cdd:smart00015   1 RLTRAAIIIQAAWRGYLARKRYK 23
IQ pfam00612
IQ calmodulin-binding motif; Calmodulin-binding motif.
119-137 1.94e-03

IQ calmodulin-binding motif; Calmodulin-binding motif.


Pssm-ID: 459869  Cd Length: 21  Bit Score: 35.37  E-value: 1.94e-03
                          10
                  ....*....|....*....
gi 15241692   119 AAMKIQSAFRGYLARRALR 137
Cdd:pfam00612   3 AAIKIQAAWRGYLARKRYK 21
 
Name Accession Description Interval E-value
DUF4005 pfam13178
Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing ...
286-399 5.17e-12

Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins.


Pssm-ID: 404128  Cd Length: 97  Bit Score: 61.87  E-value: 5.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241692   286 GSSGSRRRTPFTPTSrseyswgcnnyyysGYHPNYMANTESYKAKVRSQSAPKQRVevsnETSGYKRSvqgqyyyYTAVE 365
Cdd:pfam13178  10 YSSSGTSNTPFTPSR--------------SSLPNYMAATESAKAKLRSQSAPRQRP----STPERDRS-------GSAAK 64
                          90       100       110
                  ....*....|....*....|....*....|....
gi 15241692   366 EESLDVGSAGYYGGGGGDSDRlNRNQSAKSRMHS 399
Cdd:pfam13178  65 RLSLPAPSPNGKGSSYGPRAR-QVQASYKHSLRS 97
IQCD cd23767
IQ (isoleucine-glutamine) motif containing D (IQCD); IQCD, also called dynein regulatory ...
111-144 6.46e-05

IQ (isoleucine-glutamine) motif containing D (IQCD); IQCD, also called dynein regulatory complex protein 10 (DRC10), belongs to the IQ motif-containing protein family which contains a C-terminal conserved IQ motif domain and two coiled-coil domains. The IQ motif ([ILV]QxxxRxxxx[RK]), where x stands for any amino-acid residue, interacts with calmodulin (CaM) in a calcium-independent manner and is present in proteins with a wide diversity of biological functions. The IQCD protein was found to primarily accumulate in the acrosome area of round and elongating spermatids of the testis during late stage of spermiogenesis and was then localized to the acrosome and tail regions of mature spermatozoa. The expression of IQCD follows the trajectory of acrosome development during spermatogenesis. IQCD is associated with neuroblastoma and neurodegenerative diseases, and is reported to interact with the nuclear retinoid X receptor in the presence of 9-cis-retinoic acid, thereby activating the transcriptional activity of the receptor.


Pssm-ID: 467745 [Multi-domain]  Cd Length: 37  Bit Score: 39.83  E-value: 6.46e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 15241692 111 RRWAQENIAAMKIQSAFRGYLARRALRALKALVK 144
Cdd:cd23767   3 EELQRMNRAATLIQALWRGYKVRKELKKKKKKGK 36
IQ smart00015
Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln ...
115-137 8.85e-04

Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln residues.


Pssm-ID: 197470 [Multi-domain]  Cd Length: 23  Bit Score: 36.15  E-value: 8.85e-04
                           10        20
                   ....*....|....*....|...
gi 15241692    115 QENIAAMKIQSAFRGYLARRALR 137
Cdd:smart00015   1 RLTRAAIIIQAAWRGYLARKRYK 23
Adgb_C_mid-like cd22307
C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted ...
115-169 9.09e-04

C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif; Androglobin (Adgb, also known as Calpain-7-like protein, CAPN7L) is a large multidomain protein consisting of an N-terminal peptidase C2 family calpain-like domain, an IQ calmodulin-binding motif, and an internal, circularly permuted globin domain. The canonical secondary structure of hemoglobins is an 3-over-3 alpha-helical sandwich structure, where the eight alpha-helical segments are conventionally labeled, A-H, according to their sequential order; Adgbs differ from this in having helices C-H followed by A-B. Adgbs and other phylogenetically ancient globins, such as neuroglobins and globin X, form hexacoordinated heme iron complexes. Globins contain various highly conserved residues of the heme pocket: including a Phe in the interhelical position CD1 (Phe CD1, first position in the loop between the helices C and D) that is packed against the heme, a His at the 7th position of the E-helix (His E7) that binds the heme iron distally, and a His at the 8th position of the F-helix (His F8) that binds the heme iron proximally. Unlike other hexacoordinated globins, Adgbs have an E7 Gln; their hexacoordination scheme is [Gln]-Fe-[His]. In mammals, Adgb is mainly expressed in the testes and may play an important role in spermatogenesis. Arthropod Adgbs have degenerate globin domains (DOI:10.3389/fgene.2020.00858). This model spans the permuted globin domain, the IQ motif, and a conserved region of about 200 amino acid residues located C-terminal to the globin domain; it does not include the N-terminal protease domain or the large uncharacterized C-terminal domain of approximately 500 residues.


Pssm-ID: 412094  Cd Length: 416  Bit Score: 41.00  E-value: 9.09e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15241692 115 QENIAAMKIQSAFRGYLARRALRALKAlvklqalvrGHIVRKQTADMLRRMQTLV 169
Cdd:cd22307 145 EEHEAATKIQAFFRGTLVRKLLKAHKP---------GTKENLKVAETLKKIWEKI 190
IQ pfam00612
IQ calmodulin-binding motif; Calmodulin-binding motif.
119-137 1.94e-03

IQ calmodulin-binding motif; Calmodulin-binding motif.


Pssm-ID: 459869  Cd Length: 21  Bit Score: 35.37  E-value: 1.94e-03
                          10
                  ....*....|....*....
gi 15241692   119 AAMKIQSAFRGYLARRALR 137
Cdd:pfam00612   3 AAIKIQAAWRGYLARKRYK 21
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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