|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
101-497 |
2.84e-82 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 272.49 E-value: 2.84e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 101 RFFVEMRRRSVPPDFHTFPFVFKACAAKknGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQ 180
Cdd:PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 181 RDVVTY----------------------------------------------------------------------NVLI 190
Cdd:PLN03077 352 KDAVSWtamisgyeknglpdkaletyalmeqdnvspdeitiasvlsacaclgdldvgvklhelaerkglisyvvvaNALI 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 191 DGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVaLGLKPDNVAIVSTLSACAQSGDWQKGKA 270
Cdd:PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKE 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 271 IHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCsDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Cdd:PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 351 VTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDggnrEKLLAWSGLLG 430
Cdd:PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT----PDPAVWGALLN 665
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15240355 431 GCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIdRDKKVKKNVGFSKV 497
Cdd:PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM-RENGLTVDPGCSWV 731
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
435-497 |
6.03e-09 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 52.16 E-value: 6.03e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15240355 435 HGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIdRDKKVKKNVGFSKV 497
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLM-KSSGIKKRPGCSWI 62
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
215-248 |
1.31e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 44.75 E-value: 1.31e-06
10 20 30
....*....|....*....|....*....|....
gi 15240355 215 VSWNSLISGYAQMNHCREAIKLFDEMVALGLKPD 248
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
364-485 |
1.56e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 364 GLVDEARNLFDQMRSLYDVNREMKHYgcMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAwsgLLGGC-RIHGNIEIAE 442
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRL--LAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC---ELAELyLEQGDYDEAI 164
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15240355 443 KAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKV-REIIDRD 485
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAlERALEQD 208
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
101-497 |
2.84e-82 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 272.49 E-value: 2.84e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 101 RFFVEMRRRSVPPDFHTFPFVFKACAAKknGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQ 180
Cdd:PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 181 RDVVTY----------------------------------------------------------------------NVLI 190
Cdd:PLN03077 352 KDAVSWtamisgyeknglpdkaletyalmeqdnvspdeitiasvlsacaclgdldvgvklhelaerkglisyvvvaNALI 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 191 DGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVaLGLKPDNVAIVSTLSACAQSGDWQKGKA 270
Cdd:PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKE 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 271 IHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCsDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Cdd:PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 351 VTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDggnrEKLLAWSGLLG 430
Cdd:PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT----PDPAVWGALLN 665
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15240355 431 GCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIdRDKKVKKNVGFSKV 497
Cdd:PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM-RENGLTVDPGCSWV 731
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
101-484 |
7.66e-64 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 219.74 E-value: 7.66e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 101 RFFVEMRRRSVPPDFHTFPFVFKACAAKknGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSliapidsalqlfdenpq 180
Cdd:PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGL--GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS----------------- 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 181 rdvvtynvlidglvKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACA 260
Cdd:PLN03081 271 --------------KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 261 QSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRK 340
Cdd:PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 341 MVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMP-KDGGNr 419
Cdd:PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPfKPTVN- 495
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15240355 420 ekllAWSGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDR 484
Cdd:PLN03081 496 ----MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
111-435 |
8.59e-39 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 150.77 E-value: 8.59e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 111 VPPDFHTFPFVFKACAAKKngDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYsliapidsalqlfdenpqrdvvtynvli 190
Cdd:PLN03077 183 VRPDVYTFPCVLRTCGGIP--DLARGREVHAHVVRFGFELDVDVVNALITMY---------------------------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 191 dglVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKA 270
Cdd:PLN03077 233 ---VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 271 IHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Cdd:PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 351 VTFISVLVGCSHSGLVDEARNLFDqmrsLYDVNREMKHY---GCMADLLGRAGLIEEAAEMIEQMPkdggnREKLLAWSG 427
Cdd:PLN03077 390 ITIASVLSACACLGDLDVGVKLHE----LAERKGLISYVvvaNALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTS 460
|
....*...
gi 15240355 428 LLGGCRIH 435
Cdd:PLN03077 461 IIAGLRLN 468
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
187-436 |
1.27e-25 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 111.09 E-value: 1.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 187 NVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQ 266
Cdd:PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 267 KGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGI 346
Cdd:PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 347 KPDGVTFISVLVGCshsGLVDEARnLFDQMRSlYDVNR----EMKHYGCMADLLGRAGLIEEAAEMIEQMpkdggNREKL 422
Cdd:PLN03077 285 DPDLMTITSVISAC---ELLGDER-LGREMHG-YVVKTgfavDVSVCNSLIQMYLSLGSWGEAEKVFSRM-----ETKDA 354
|
250
....*....|....
gi 15240355 423 LAWSGLLGGCRIHG 436
Cdd:PLN03077 355 VSWTAMISGYEKNG 368
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
113-378 |
2.98e-11 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 66.05 E-value: 2.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 113 PDFHTFPFVFKACAAKKNGD-----LTLVKTLhcqalrfGLLSDLFTLNTLIRVYSLIAPIDSALQLFDE----NPQRDV 183
Cdd:PLN03218 435 PTLSTFNMLMSVCASSQDIDgalrvLRLVQEA-------GLKADCKLYTTLISTCAKSGKVDAMFEVFHEmvnaGVEANV 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 184 VTYNVLIDGLVKAREIVRARELFDSMPLR----DLVSWNSLISGYAQMNHCREAIKLFDEMVALG--LKPDNVAIVSTLS 257
Cdd:PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKnvkpDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMK 587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 258 ACA-----------------------------------QSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDT 302
Cdd:PLN03218 588 ACAnagqvdrakevyqmiheynikgtpevytiavnscsQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 303 AMEIFE-------------------LCSD--------------------KTLFTWNAMITGLAMHGNGELTVDYFRKMVS 343
Cdd:PLN03218 668 AFEILQdarkqgiklgtvsysslmgACSNaknwkkalelyediksiklrPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
|
330 340 350
....*....|....*....|....*....|....*
gi 15240355 344 SGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRS 378
Cdd:PLN03218 748 LGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
435-497 |
6.03e-09 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 52.16 E-value: 6.03e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15240355 435 HGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIdRDKKVKKNVGFSKV 497
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLM-KSSGIKKRPGCSWI 62
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
212-261 |
8.67e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 51.21 E-value: 8.67e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15240355 212 RDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQ 261
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
232-370 |
1.55e-08 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 57.17 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 232 EAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCS 311
Cdd:PLN03077 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP 148
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 15240355 312 DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCshSGLVDEAR 370
Cdd:PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGIPDLAR 205
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
256-416 |
3.45e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 56.42 E-value: 3.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 256 LSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIF-ELCS---DKTLFTWNAMITGLAMHGNG 331
Cdd:PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFhEMVNagvEANVHTFGALIDGCARAGQV 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 332 ELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEArnlfdqmrslYDVNREMK---------H--YGCMADLLGRAG 400
Cdd:PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA----------FDVLAEMKaethpidpdHitVGALMKACANAG 593
|
170
....*....|....*.
gi 15240355 401 LIEEAAEMIEQMPKDG 416
Cdd:PLN03218 594 QVDRAKEVYQMIHEYN 609
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
181-226 |
6.85e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 48.90 E-value: 6.85e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15240355 181 RDVVTYNVLIDGLVKAREIVRARELFDSMPLR----DLVSWNSLISGYAQ 226
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
215-245 |
6.49e-07 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 45.53 E-value: 6.49e-07
10 20 30
....*....|....*....|....*....|.
gi 15240355 215 VSWNSLISGYAQMNHCREAIKLFDEMVALGL 245
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
316-362 |
9.02e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 45.82 E-value: 9.02e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 15240355 316 FTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSH 362
Cdd:pfam13041 4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
215-248 |
1.31e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 44.75 E-value: 1.31e-06
10 20 30
....*....|....*....|....*....|....
gi 15240355 215 VSWNSLISGYAQMNHCREAIKLFDEMVALGLKPD 248
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
316-349 |
1.11e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.06 E-value: 1.11e-05
10 20 30
....*....|....*....|....*....|....
gi 15240355 316 FTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPD 349
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
364-485 |
1.56e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 364 GLVDEARNLFDQMRSLYDVNREMKHYgcMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAwsgLLGGC-RIHGNIEIAE 442
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRL--LAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC---ELAELyLEQGDYDEAI 164
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15240355 443 KAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKV-REIIDRD 485
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAlERALEQD 208
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
182-209 |
1.92e-05 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 41.56 E-value: 1.92e-05
10 20
....*....|....*....|....*...
gi 15240355 182 DVVTYNVLIDGLVKAREIVRARELFDSM 209
Cdd:pfam12854 6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
213-241 |
5.44e-05 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 40.02 E-value: 5.44e-05
10 20
....*....|....*....|....*....
gi 15240355 213 DLVSWNSLISGYAQMNHCREAIKLFDEMV 241
Cdd:pfam12854 6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
184-215 |
1.74e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 38.98 E-value: 1.74e-04
10 20 30
....*....|....*....|....*....|..
gi 15240355 184 VTYNVLIDGLVKAREIVRARELFDSMPLRDLV 215
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
77-268 |
2.35e-04 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 44.10 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 77 PSTFCFNTIIRICTlhepSSLSSKRFF---VEMRRRSVP--PDFHTFPFVFKACA-------AK---------------- 128
Cdd:PLN03218 540 PDRVVFNALISACG----QSGAVDRAFdvlAEMKAETHPidPDHITVGALMKACAnagqvdrAKevyqmiheynikgtpe 615
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 129 ----------KNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDE----NPQRDVVTYNVLIDGLV 194
Cdd:PLN03218 616 vytiavnscsQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDarkqGIKLGTVSYSSLMGACS 695
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15240355 195 KAREIVRARELFD---SMPLRDLVS-WNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKG 268
Cdd:PLN03218 696 NAKNWKKALELYEdikSIKLRPTVStMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
363-480 |
2.47e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240355 363 SGLVDEARNLFDQMRSLYDVNREMkhYGCMADLLGRAGLIEEAAEMIEQ-MPKDGGNREkllAWSgLLGGCRIH-GNIEI 440
Cdd:COG4783 17 AGDYDEAEALLEKALELDPDNPEA--FALLGEILLQLGDLDEAIVLLHEaLELDPDEPE---ARL-NLGLALLKaGDYDE 90
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 15240355 441 AEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVRE 480
Cdd:COG4783 91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
316-346 |
4.28e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.44 E-value: 4.28e-04
10 20 30
....*....|....*....|....*....|.
gi 15240355 316 FTWNAMITGLAMHGNGELTVDYFRKMVSSGI 346
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
184-209 |
6.73e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.06 E-value: 6.73e-04
10 20
....*....|....*....|....*.
gi 15240355 184 VTYNVLIDGLVKAREIVRARELFDSM 209
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEM 26
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
345-377 |
2.72e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 35.40 E-value: 2.72e-03
10 20 30
....*....|....*....|....*....|....*.
gi 15240355 345 GIKPDGVTF---ISVLvgCSHsGLVDEARNLFDQMR 377
Cdd:pfam12854 2 GLKPDVVTYntlINGL--CRA-GRVDEAFELLDEME 34
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
77-126 |
8.13e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 34.65 E-value: 8.13e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 15240355 77 PSTFCFNTIIR-ICTLHEPSSlsSKRFFVEMRRRSVPPDFHTFPFVFKACA 126
Cdd:pfam13041 1 PDVVTYNTLINgYCKKGKVEE--AFKLFNEMKKRGVKPNVYTYTILINGLC 49
|
|
| |
