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Conserved domains on  [gi|15239359|ref|NP_200860|]
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Late embryogenesis abundant (LEA) protein-like protein [Arabidopsis thaliana]

Protein Classification

root cap domain-containing protein( domain architecture ID 10536276)

root cap domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Root_cap pfam06830
Root cap; The cells at the periphery of the root cap are continuously sloughed off from the ...
 271-327 1.15e-34

Root cap; The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die.This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.


:

Pssm-ID: 462016  Cd Length: 57  Bit Score: 120.81  E-value: 1.15e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15239359   271 QFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDKYQTPSLFSPLCNVCRF 327
Cdd:pfam06830   1 GFKFYSLSDDVEGVLGQTYRPDYVSRVKVGVAMPVMGGEDKYRTSSLFSTDCAVCRF 57
 
Name Accession Description Interval E-value
Root_cap pfam06830
Root cap; The cells at the periphery of the root cap are continuously sloughed off from the ...
 271-327 1.15e-34

Root cap; The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die.This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.


Pssm-ID: 462016  Cd Length: 57  Bit Score: 120.81  E-value: 1.15e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15239359   271 QFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDKYQTPSLFSPLCNVCRF 327
Cdd:pfam06830   1 GFKFYSLSDDVEGVLGQTYRPDYVSRVKVGVAMPVMGGEDKYRTSSLFSTDCAVCRF 57
 
Name Accession Description Interval E-value
Root_cap pfam06830
Root cap; The cells at the periphery of the root cap are continuously sloughed off from the ...
 271-327 1.15e-34

Root cap; The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die.This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.


Pssm-ID: 462016  Cd Length: 57  Bit Score: 120.81  E-value: 1.15e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15239359   271 QFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDKYQTPSLFSPLCNVCRF 327
Cdd:pfam06830   1 GFKFYSLSDDVEGVLGQTYRPDYVSRVKVGVAMPVMGGEDKYRTSSLFSTDCAVCRF 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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