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Conserved domains on  [gi|15238384|ref|NP_200743|]
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uncharacterized protein AT5G59350 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP-S22 super family cl10929
Mitochondrial 28S ribosomal protein S22; This is the conserved N-terminus and central portion ...
 195-232 5.61e-03

Mitochondrial 28S ribosomal protein S22; This is the conserved N-terminus and central portion of the mitochondrial small subunit 28S ribosomal protein S22. Mammalian mitochondria carry out the synthesis of 13 polypeptides that are essential for oxidative phosphorylation and, hence, for the synthesis of the majority of the ATP used by eukaryotic organizms. The number of proteins produced by prokaryotes is smaller, reflected in the lower number of ribosomal proteins present in them.


The actual alignment was detected with superfamily member pfam10245:

Pssm-ID: 431167  Cd Length: 241  Bit Score: 37.55  E-value: 5.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15238384   195 LEFNKFFRS---SSSPPPKFKFMRDAE-EKLRKRLIEEAKRR 232
Cdd:pfam10245  16 LDLNKVFRPrkqEELKPPKYKLMTDEQlEEAQAKAIERAKKL 57
 
Name Accession Description Interval E-value
MRP-S22 pfam10245
Mitochondrial 28S ribosomal protein S22; This is the conserved N-terminus and central portion ...
 195-232 5.61e-03

Mitochondrial 28S ribosomal protein S22; This is the conserved N-terminus and central portion of the mitochondrial small subunit 28S ribosomal protein S22. Mammalian mitochondria carry out the synthesis of 13 polypeptides that are essential for oxidative phosphorylation and, hence, for the synthesis of the majority of the ATP used by eukaryotic organizms. The number of proteins produced by prokaryotes is smaller, reflected in the lower number of ribosomal proteins present in them.


Pssm-ID: 431167  Cd Length: 241  Bit Score: 37.55  E-value: 5.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15238384   195 LEFNKFFRS---SSSPPPKFKFMRDAE-EKLRKRLIEEAKRR 232
Cdd:pfam10245  16 LDLNKVFRPrkqEELKPPKYKLMTDEQlEEAQAKAIERAKKL 57
 
Name Accession Description Interval E-value
MRP-S22 pfam10245
Mitochondrial 28S ribosomal protein S22; This is the conserved N-terminus and central portion ...
 195-232 5.61e-03

Mitochondrial 28S ribosomal protein S22; This is the conserved N-terminus and central portion of the mitochondrial small subunit 28S ribosomal protein S22. Mammalian mitochondria carry out the synthesis of 13 polypeptides that are essential for oxidative phosphorylation and, hence, for the synthesis of the majority of the ATP used by eukaryotic organizms. The number of proteins produced by prokaryotes is smaller, reflected in the lower number of ribosomal proteins present in them.


Pssm-ID: 431167  Cd Length: 241  Bit Score: 37.55  E-value: 5.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15238384   195 LEFNKFFRS---SSSPPPKFKFMRDAE-EKLRKRLIEEAKRR 232
Cdd:pfam10245  16 LDLNKVFRPrkqEELKPPKYKLMTDEQlEEAQAKAIERAKKL 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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