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Conserved domains on  [gi|15242793|ref|NP_200570|]
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myb domain protein 36 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-122 8.51e-50

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.08  E-value: 8.51e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242793    1 MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGnWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIIL 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 15242793   81 SLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLlgRQK 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-122 8.51e-50

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.08  E-value: 8.51e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242793    1 MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGnWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIIL 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 15242793   81 SLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLlgRQK 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-132 6.01e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.21  E-value: 6.01e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242793  11 NVKKGPWSPEEDVKLKDYIDKYGTGgNWIALPQKIGlKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRW 90
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 15242793  91 SIIAAQLPGRTDNDIKNYWNTKLKKKLLGRQKQMNRQDSITD 132
Cdd:COG5147  95 STIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDK 136
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-62 3.26e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 60.21  E-value: 3.26e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15242793    14 KGPWSPEEDVKLKDYIDKYgtGGNWIALPQKIGlKRCGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKL--GNRWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 8.58e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 50.69  E-value: 8.58e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 15242793     14 KGPWSPEEDVKLKDYIDKYGTgGNWIALPQKIGlKRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 2.64e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 49.50  E-value: 2.64e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15242793  16 PWSPEEDVKLKDYIDKYGTgGNWIALPQKIGlKRCGKSCRLRWLNYL 62
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-122 8.51e-50

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.08  E-value: 8.51e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242793    1 MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGnWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIIL 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 15242793   81 SLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLlgRQK 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-118 4.11e-46

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 156.78  E-value: 4.11e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242793    5 PCCDKANVKKGPWSPEEDVKLKDYIDKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYI 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEG-RWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110
                 ....*....|....*....|....*....|....
gi 15242793   85 SIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLL 118
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-132 6.01e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.21  E-value: 6.01e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242793  11 NVKKGPWSPEEDVKLKDYIDKYGTGgNWIALPQKIGlKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRW 90
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 15242793  91 SIIAAQLPGRTDNDIKNYWNTKLKKKLLGRQKQMNRQDSITD 132
Cdd:COG5147  95 STIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDK 136
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-62 3.26e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 60.21  E-value: 3.26e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15242793    14 KGPWSPEEDVKLKDYIDKYgtGGNWIALPQKIGlKRCGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKL--GNRWKKIAKLLP-GRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 3.19e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.51  E-value: 3.19e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15242793    68 HGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKL 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-77 3.72e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 55.01  E-value: 3.72e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15242793    17 WSPEEDVKLKDYIDKYGtgGNWIALPQKIGlKRCGKSCRLRWLNYLRPNIKHGGFSEEEDR 77
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG--NDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQ 58
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 8.58e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 50.69  E-value: 8.58e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 15242793     14 KGPWSPEEDVKLKDYIDKYGTgGNWIALPQKIGlKRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 2.64e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 49.50  E-value: 2.64e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15242793  16 PWSPEEDVKLKDYIDKYGTgGNWIALPQKIGlKRCGKSCRLRWLNYL 62
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
71-115 3.40e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 49.14  E-value: 3.40e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 15242793     71 FSEEEDRIILSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK 115
Cdd:smart00717   4 WTEEEDELLIELVKKYGKnNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-113 3.76e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 48.73  E-value: 3.76e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 15242793  71 FSEEEDRIILSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTKL 113
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKnNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 71-117 5.58e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.07  E-value: 5.58e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15242793    71 FSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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