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Conserved domains on  [gi|15242947|ref|NP_200039|]
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myb domain protein 19 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 9-115 1.09e-50

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.47  E-value: 1.09e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242947    9 KQRQRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHSSLGNK 88
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100
                 ....*....|....*....|....*..
gi 15242947   89 WSRIAKYLPGRTDNEIKNYWHSYLKKR 115
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKK 115
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 9-115 1.09e-50

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.47  E-value: 1.09e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242947    9 KQRQRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHSSLGNK 88
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100
                 ....*....|....*....|....*..
gi 15242947   89 WSRIAKYLPGRTDNEIKNYWHSYLKKR 115
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKK 115
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-112 8.31e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 58.67  E-value: 8.31e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15242947    67 RGSFSEEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSYL 112
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 6-158 7.81e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 61.73  E-value: 7.81e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242947   6 ERPKQRQRK-GLWSPEEDQKLKSFILSRGHACWTTVPILAGLqRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHSS 84
Cdd:COG5147  11 IKLMQTKRKgGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKE 89

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15242947  85 LGNKWSRIAKYLPGRTDNEIKNYW----HSYLKKRWLKSQPQLK-SQISDLTESPSSLLSCGKRNLETETLDHVISFQK 158
Cdd:COG5147  90 LGTQWSTIADYKDRRTAQQCVERYvntlEDLSSTHDSKLQRRNEfDKIDPFNENSARRPDIYEDELLEREVNREASYRL 168
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 78-112 8.40e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 44.87  E-value: 8.40e-07
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 15242947  78 ILTLHSSLG-NKWSRIAKYLPGRTDNEIKNYWHSYL 112
Cdd:cd00167  10 LLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 1.01e-06

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 44.52  E-value: 1.01e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15242947     67 RGSFSEEEEETILTLHSSLG-NKWSRIAKYLPGRTDNEIKNYWHSYLKK 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 9-115 1.09e-50

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.47  E-value: 1.09e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242947    9 KQRQRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHSSLGNK 88
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100
                 ....*....|....*....|....*..
gi 15242947   89 WSRIAKYLPGRTDNEIKNYWHSYLKKR 115
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKK 115
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 9-143 1.10e-36

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 130.58  E-value: 1.10e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242947    9 KQRQRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHSSLGNK 88
Cdd:PLN03212  20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 15242947   89 WSRIAKYLPGRTDNEIKNYWHSYLKKRWLKS--QPQLKSQI-SDLTESPSSLLSCGKR 143
Cdd:PLN03212 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQgiDPQTHKPLdANNIHKPEEEVSGGQK 157
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-112 8.31e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 58.67  E-value: 8.31e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15242947    67 RGSFSEEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSYL 112
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 6-158 7.81e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 61.73  E-value: 7.81e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242947   6 ERPKQRQRK-GLWSPEEDQKLKSFILSRGHACWTTVPILAGLqRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHSS 84
Cdd:COG5147  11 IKLMQTKRKgGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKE 89

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15242947  85 LGNKWSRIAKYLPGRTDNEIKNYW----HSYLKKRWLKSQPQLK-SQISDLTESPSSLLSCGKRNLETETLDHVISFQK 158
Cdd:COG5147  90 LGTQWSTIADYKDRRTAQQCVERYvntlEDLSSTHDSKLQRRNEfDKIDPFNENSARRPDIYEDELLEREVNREASYRL 168
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-61 6.97e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 45.19  E-value: 6.97e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15242947    14 KGLWSPEEDQKLKSFILSRGHaCWTTVPILAGLqRNGKSCRLRWINYL 61
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 78-112 8.40e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 44.87  E-value: 8.40e-07
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 15242947  78 ILTLHSSLG-NKWSRIAKYLPGRTDNEIKNYWHSYL 112
Cdd:cd00167  10 LLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 1.01e-06

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 44.52  E-value: 1.01e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15242947     67 RGSFSEEEEETILTLHSSLG-NKWSRIAKYLPGRTDNEIKNYWHSYLKK 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-61 7.31e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 39.48  E-value: 7.31e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15242947  17 WSPEEDQKLKSFILSRGHACWTTVPILAGLqRNGKSCRLRWINYL 61
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 8.52e-05

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 39.13  E-value: 8.52e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15242947     14 KGLWSPEEDQKLKSFILSRGHACWTTVPILAGLqRNGKSCRLRWINYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-71 2.46e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 38.45  E-value: 2.46e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15242947    17 WSPEEDQKLKSFILSRGHAcWTTVPILAGlQRNGKSCRLRWINYLRPGLKRGSFS 71
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWS 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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