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Conserved domains on  [gi|15242288|ref|NP_200029|]
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Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AAI_LTSS super family cl07890
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 35-96 2.15e-06

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


The actual alignment was detected with superfamily member cd04660:

Pssm-ID: 447555  Cd Length: 73  Bit Score: 41.59  E-value: 2.15e-06
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15242288 35 CNAQLSTLNVCGEFVVPGADRTNPSAECCNALEAVPNECLCNTFRI----------ASRLPSRCNIPTLSCS 96
Cdd:cd04660  1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSlvlqiidpdkAVYLPAKCGLPLPPSS 72
 
Name Accession Description Interval E-value
nsLTP_like cd04660
nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of ...
 35-96 2.15e-06

nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.


Pssm-ID: 240018  Cd Length: 73  Bit Score: 41.59  E-value: 2.15e-06
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15242288 35 CNAQLSTLNVCGEFVVPGADRTNPSAECCNALEAVPNECLCNTFRI----------ASRLPSRCNIPTLSCS 96
Cdd:cd04660  1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSlvlqiidpdkAVYLPAKCGLPLPPSS 72
Tryp_alpha_amyl pfam00234
Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase ...
 35-92 7.46e-05

Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants.


Pssm-ID: 425543  Cd Length: 74  Bit Score: 37.55  E-value: 7.46e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242288   35 CNAQLSTLNVCGEFVVPGAdrTNPSAECCNALEAVPNECLCNTFR------------IASRLPSRCNIPT 92
Cdd:pfam00234  1 CGQVLLCLAPCLGYLQGGC--QVPSQQCCSQLRQLQAQCRCTAIRaivlgieginpqAAASLPSMCGVNV 68
AAI smart00499
Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain ...
 35-92 5.57e-04

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family;


Pssm-ID: 214698  Cd Length: 79  Bit Score: 35.43  E-value: 5.57e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242288    35 CNAQLSTLNVCGEFVVPGADRTNPSAECCNALEAVPNE-CLCNTFRI---------------ASRLPSRCNIPT 92
Cdd:smart00499  1 CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLNSAqCRCLALRAavlgileipglnaqnAASLPSACGVPP 74
 
Name Accession Description Interval E-value
nsLTP_like cd04660
nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of ...
 35-96 2.15e-06

nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.


Pssm-ID: 240018  Cd Length: 73  Bit Score: 41.59  E-value: 2.15e-06
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15242288 35 CNAQLSTLNVCGEFVVPGADRTNPSAECCNALEAVPNECLCNTFRI----------ASRLPSRCNIPTLSCS 96
Cdd:cd04660  1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSlvlqiidpdkAVYLPAKCGLPLPPSS 72
Tryp_alpha_amyl pfam00234
Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase ...
 35-92 7.46e-05

Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants.


Pssm-ID: 425543  Cd Length: 74  Bit Score: 37.55  E-value: 7.46e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242288   35 CNAQLSTLNVCGEFVVPGAdrTNPSAECCNALEAVPNECLCNTFR------------IASRLPSRCNIPT 92
Cdd:pfam00234  1 CGQVLLCLAPCLGYLQGGC--QVPSQQCCSQLRQLQAQCRCTAIRaivlgieginpqAAASLPSMCGVNV 68
AAI smart00499
Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain ...
 35-92 5.57e-04

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family;


Pssm-ID: 214698  Cd Length: 79  Bit Score: 35.43  E-value: 5.57e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242288    35 CNAQLSTLNVCGEFVVPGADRTNPSAECCNALEAVPNE-CLCNTFRI---------------ASRLPSRCNIPT 92
Cdd:smart00499  1 CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLNSAqCRCLALRAavlgileipglnaqnAASLPSACGVPP 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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