|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-430 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 633.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 2 VLAELGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFS 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 82 ELCKMLDPGKSAFAPKKAKPSVVMFVGLQGEvlEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPY 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGA--GKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 162 YGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQT 241
Cdd:TIGR01425 159 YGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 242 VAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPEL 321
Cdd:TIGR01425 239 VEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 322 LEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSNpKVF--N 399
Cdd:TIGR01425 319 IEHLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA-KTMlkD 397
|
410 420 430
....*....|....*....|....*....|.
gi 15239909 400 ESRIMRIARGSGRIVREVMEMLEEYKRLTTM 430
Cdd:TIGR01425 398 PSRIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-445 |
5.79e-151 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 437.72 E-value: 5.79e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 6 LGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFSELCK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 86 MLDpGKSAFAPKKAKPSVVMFVGLQGEvlEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSY 165
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGS--GKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 166 TGSDPVKIAVEGVDRFKKEncDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVG 245
Cdd:PRK00771 158 DNKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 246 AVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEML 325
Cdd:PRK00771 236 GIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKM 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 326 SHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEmMPEGHEKESQAKIKRYMTMMDSMTNEELDssNPKVFNESRIMR 405
Cdd:PRK00771 316 MKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELE--NPEIINASRIRR 392
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 15239909 406 IARGSGRIVREVMEMLEEYKRLTTMwgkvkgLKNLEKGNM 445
Cdd:PRK00771 393 IARGSGTTVEDVRELLKYYKMMKKA------MKQLKKGKG 426
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-425 |
7.21e-126 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 373.20 E-value: 7.21e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 6 LGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMqtnIKKIvnledlaaghnKRRIIEQAIFS---- 81
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDF---IERV-----------KERALGEEVLKsltp 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 82 ----------ELCKMLDPGKSAFAPKKAKPSVVMFVGLQGevlekpqlvpS-----------MLiiiRRKGYKPALVCAD 140
Cdd:COG0541 71 gqqvikivhdELVELLGGENEELNLAKKPPTVIMMVGLQG----------SgktttaaklakYL---KKKGKKPLLVAAD 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 141 TFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVI 220
Cdd:COG0541 138 VYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETL 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 221 FVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNG 300
Cdd:COG0541 218 LVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMG 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 301 DMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMrAEMMPEGHEKESQAKIKRYMT 380
Cdd:COG0541 298 DVLSLIEKAQEAIDEEEAEKLAKKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGM-GKLKQLKDLDIDEKELKRIEA 376
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 15239909 381 MMDSMTNEELDssNPKVFNESRIMRIARGSGRIVREVMEMLEEYK 425
Cdd:COG0541 377 IINSMTPEERR--NPDIINGSRKRRIAKGSGTTVQDVNRLLKQFE 419
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-296 |
1.65e-118 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 345.72 E-value: 1.65e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 102 SVVMFVGLQGEvlEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRF 181
Cdd:cd17875 1 NVIMFVGLQGS--GKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 182 KKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGT 261
Cdd:cd17875 79 KKEKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGA 158
|
170 180 190
....*....|....*....|....*....|....*
gi 15239909 262 LSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRL 296
Cdd:cd17875 159 LSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-296 |
2.75e-96 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 289.06 E-value: 2.75e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 102 SVVMFVGLQGevLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRF 181
Cdd:pfam00448 1 NVILLVGLQG--SGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 182 KKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGT 261
Cdd:pfam00448 79 KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAA 158
|
170 180 190
....*....|....*....|....*....|....*
gi 15239909 262 LSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRL 296
Cdd:pfam00448 159 LSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
101-298 |
8.47e-79 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 244.24 E-value: 8.47e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 101 PSVVMFVGLQGEVleKPQLVPSM-LIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVD 179
Cdd:smart00962 1 PGVILLVGPNGVG--KTTTIAKLaARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 180 RFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGG 259
Cdd:smart00962 79 LAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGG 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 15239909 260 GTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLG 298
Cdd:smart00962 159 AALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-430 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 633.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 2 VLAELGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFS 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 82 ELCKMLDPGKSAFAPKKAKPSVVMFVGLQGEvlEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPY 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGA--GKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 162 YGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQT 241
Cdd:TIGR01425 159 YGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 242 VAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPEL 321
Cdd:TIGR01425 239 VEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 322 LEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSNpKVF--N 399
Cdd:TIGR01425 319 IEHLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA-KTMlkD 397
|
410 420 430
....*....|....*....|....*....|.
gi 15239909 400 ESRIMRIARGSGRIVREVMEMLEEYKRLTTM 430
Cdd:TIGR01425 398 PSRIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-445 |
5.79e-151 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 437.72 E-value: 5.79e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 6 LGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFSELCK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 86 MLDpGKSAFAPKKAKPSVVMFVGLQGEvlEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSY 165
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGS--GKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 166 TGSDPVKIAVEGVDRFKKEncDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVG 245
Cdd:PRK00771 158 DNKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 246 AVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEML 325
Cdd:PRK00771 236 GIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKM 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 326 SHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEmMPEGHEKESQAKIKRYMTMMDSMTNEELDssNPKVFNESRIMR 405
Cdd:PRK00771 316 MKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELE--NPEIINASRIRR 392
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 15239909 406 IARGSGRIVREVMEMLEEYKRLTTMwgkvkgLKNLEKGNM 445
Cdd:PRK00771 393 IARGSGTTVEDVRELLKYYKMMKKA------MKQLKKGKG 426
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-425 |
7.21e-126 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 373.20 E-value: 7.21e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 6 LGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMqtnIKKIvnledlaaghnKRRIIEQAIFS---- 81
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDF---IERV-----------KERALGEEVLKsltp 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 82 ----------ELCKMLDPGKSAFAPKKAKPSVVMFVGLQGevlekpqlvpS-----------MLiiiRRKGYKPALVCAD 140
Cdd:COG0541 71 gqqvikivhdELVELLGGENEELNLAKKPPTVIMMVGLQG----------SgktttaaklakYL---KKKGKKPLLVAAD 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 141 TFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVI 220
Cdd:COG0541 138 VYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETL 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 221 FVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNG 300
Cdd:COG0541 218 LVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMG 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 301 DMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMrAEMMPEGHEKESQAKIKRYMT 380
Cdd:COG0541 298 DVLSLIEKAQEAIDEEEAEKLAKKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGM-GKLKQLKDLDIDEKELKRIEA 376
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 15239909 381 MMDSMTNEELDssNPKVFNESRIMRIARGSGRIVREVMEMLEEYK 425
Cdd:COG0541 377 IINSMTPEERR--NPDIINGSRKRRIAKGSGTTVQDVNRLLKQFE 419
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-296 |
1.65e-118 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 345.72 E-value: 1.65e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 102 SVVMFVGLQGEvlEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRF 181
Cdd:cd17875 1 NVIMFVGLQGS--GKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 182 KKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGT 261
Cdd:cd17875 79 KKEKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGA 158
|
170 180 190
....*....|....*....|....*....|....*
gi 15239909 262 LSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRL 296
Cdd:cd17875 159 LSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
6-430 |
1.47e-98 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 303.44 E-value: 1.47e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 6 LGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFSELCK 85
Cdd:TIGR00959 4 LSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 86 MLDPGKSAFAPKKAKPSVVMFVGLQGEvlEKPQLVPSM-LIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGS 164
Cdd:TIGR00959 84 ILGGENAELNLAKKPPTVILMVGLQGS--GKTTTCGKLaYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 165 YTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAV 244
Cdd:TIGR00959 162 GKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 245 GAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEM 324
Cdd:TIGR00959 242 TGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 325 LSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAKIKRYMTMMDSMTNEELDssNPKVFNESRIM 404
Cdd:TIGR00959 322 MKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERR--NPKILNPSRRK 399
|
410 420
....*....|....*....|....*.
gi 15239909 405 RIARGSGRIVREVMEMLEEYKRLTTM 430
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMKKM 425
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-296 |
2.75e-96 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 289.06 E-value: 2.75e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 102 SVVMFVGLQGevLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRF 181
Cdd:pfam00448 1 NVILLVGLQG--SGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 182 KKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGT 261
Cdd:pfam00448 79 KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAA 158
|
170 180 190
....*....|....*....|....*....|....*
gi 15239909 262 LSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRL 296
Cdd:pfam00448 159 LSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
101-298 |
8.47e-79 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 244.24 E-value: 8.47e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 101 PSVVMFVGLQGEVleKPQLVPSM-LIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVD 179
Cdd:smart00962 1 PGVILLVGPNGVG--KTTTIAKLaARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 180 RFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGG 259
Cdd:smart00962 79 LAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGG 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 15239909 260 GTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLG 298
Cdd:smart00962 159 AALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
103-296 |
2.02e-75 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 235.73 E-value: 2.02e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 103 VVMFVGLQGevLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFK 182
Cdd:cd03115 2 VILLVGLQG--SGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 183 KENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTL 262
Cdd:cd03115 80 LEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 15239909 263 SAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRL 296
Cdd:cd03115 160 SIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
19-298 |
4.02e-57 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 192.88 E-value: 4.02e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 19 NVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFSELCKMLDPGK----SAF 94
Cdd:PRK14974 54 KITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDlfdlIEE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 95 APKKAKPSVVMFVGLQGevLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIA 174
Cdd:PRK14974 134 IKSKGKPVVIVFVGVNG--TGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVA 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 175 VEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDG 254
Cdd:PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDA 291
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 15239909 255 HAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLG 298
Cdd:PRK14974 292 DAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
6-299 |
1.06e-56 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 190.62 E-value: 1.06e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 6 LGGRIMSAIQKMNnvtIIDEKALNDcLNEItraLLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNkrriIEQAIFSELCK 85
Cdd:COG0552 16 LGEKLKSLFSGKK---KIDEDLLEE-LEEL---LIEADVGVETTEEIIEELRERVKRKKLKDPEE----LKEALKEELLE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 86 MLDPGKSAFAPKKAKPSVVMFVGLQG-----------EVLekpqlvpsmliiiRRKGYKPALVCADTFRAGAFDQLKQNA 154
Cdd:COG0552 85 ILDPVDKPLAIEEKKPFVILVVGVNGvgktttigklaHRL-------------KAEGKSVLLAAGDTFRAAAIEQLEVWG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 155 TKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEM--------RQISEAtkPDLVIFVMDSS 226
Cdd:COG0552 152 ERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELkkikrvikKLDPDA--PHEVLLVLDAT 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15239909 227 IGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGN 299
Cdd:COG0552 230 TGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
26-297 |
5.52e-54 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 182.84 E-value: 5.52e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 26 KALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSA-FAPKKAKPSVV 104
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLeLIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 105 MFVGLQGevLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKE 184
Cdd:TIGR00064 81 LFVGVNG--VGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 185 NCDLIIVDTSGRHKQQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKG 258
Cdd:TIGR00064 159 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKG 238
|
250 260 270
....*....|....*....|....*....|....*....
gi 15239909 259 GGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLL 297
Cdd:TIGR00064 239 GIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
6-298 |
9.25e-50 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 172.98 E-value: 9.25e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 6 LGGRIMSAIQKMNnvtiIDEKALNDcLNEItraLLQSDVSFPLVKEMQTNIKKIVNLEDLAAGhnkrRIIEQAIFSELCK 85
Cdd:PRK10416 31 FGEGINGLFAKKK----IDEDLLEE-LEEL---LIEADVGVETTEEIIEELRERVKRKNLKDP----EELKELLKEELAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 86 MLDPGKSAFAPKKAKPSVVMFVGLQG-----------EVLekpqlvpsmliiiRRKGYKPALVCADTFRAGAFDQLKQNA 154
Cdd:PRK10416 99 ILEPVEKPLNIEEKKPFVILVVGVNGvgktttigklaHKY-------------KAQGKKVLLAAGDTFRAAAIEQLQVWG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 155 TKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQI--------SEAtkPDLVIFVMDSS 226
Cdd:PRK10416 166 ERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIkrvikkadPDA--PHEVLLVLDAT 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15239909 227 IGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLG 298
Cdd:PRK10416 244 TGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-296 |
2.64e-49 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 167.78 E-value: 2.64e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 102 SVVMFVGLQGEvlEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRF 181
Cdd:cd18539 1 TVILLVGLQGS--GKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 182 KKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGT 261
Cdd:cd18539 79 KEEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAA 158
|
170 180 190
....*....|....*....|....*....|....*
gi 15239909 262 LSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRL 296
Cdd:cd18539 159 LSIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
128-296 |
5.27e-44 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 153.88 E-value: 5.27e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 128 RRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEM 207
Cdd:cd17874 25 KNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHTKKNLMEEL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 208 RQISEA------TKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHM 281
Cdd:cd17874 105 KKIKRVikkkdpEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKGGIVLSIADELKIPVKFVGVGEGI 184
|
170
....*....|....*
gi 15239909 282 DEFEVFDAKPFVSRL 296
Cdd:cd17874 185 DDLRPFDPEAFVEAL 199
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
329-426 |
7.71e-34 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 122.89 E-value: 7.71e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 329 KFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEghekESQAKIKRYMTMMDSMTNEELDssNPKVFNESRIMRIAR 408
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDI----DSEKKLKRIEAIIDSMTPKERD--NPDIINASRKRRIAR 74
|
90
....*....|....*...
gi 15239909 409 GSGRIVREVMEMLEEYKR 426
Cdd:pfam02978 75 GSGTSVQEVNRLLKQFKQ 92
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
130-296 |
3.53e-26 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 105.39 E-value: 3.53e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 130 KGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLfeeMRQ 209
Cdd:cd17876 27 NGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQGFDVVLIDTAGRMQNNEPL---MRA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 210 ISE---ATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGA----------VIITKMDG-HAKGGGTLSAVAATKSPVIFI 275
Cdd:cd17876 104 LAKlikENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSpsdnprlidgIVLTKFDTiDDKVGAALSMVYATGQPIVFV 183
|
170 180
....*....|....*....|.
gi 15239909 276 GTGEHMDEFEVFDAKPFVSRL 296
Cdd:cd17876 184 GTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
14-298 |
1.17e-24 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 104.95 E-value: 1.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 14 IQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDlaaghnkrriIEQAIFSELCKMLDPGKSa 93
Cdd:COG1419 90 LEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEE----------AWRALLEALARRLPVAED- 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 94 faPKKAKPSVVMFVGLQG-------------EVLekpqlvpsmliiirRKGYKPALVCADTFRAGAFDQLKQNATKSKIP 160
Cdd:COG1419 159 --PLLDEGGVIALVGPTGvgktttiaklaarFVL--------------RGKKKVALITTDTYRIGAVEQLKTYARILGVP 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 161 YYGSYTGSDpVKIAVEgvdRFKkeNCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSI-GQTAFEQARAFK 239
Cdd:COG1419 223 VEVAYDPEE-LKEALE---RLR--DKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSATTkYEDLKEIVEAFS 296
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 240 QtVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHM-DEFEVFDAKPFVSRLLG 298
Cdd:COG1419 297 S-LGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
129-296 |
2.55e-19 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 85.68 E-value: 2.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 129 RKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDpVKIAVEgvdRFKkeNCDLIIVDTSGRHKQQASLFEEMR 208
Cdd:cd17873 27 KKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPED-LADALE---RLS--DRDLILIDTAGRSPRDKEQLEELK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 209 QISEATKPDLVIFVMDSSI-GQTAFEQARAFKqTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHM-DEFEV 286
Cdd:cd17873 101 ELLGAGEDIEVHLVLSATTkAKDLKEIIERFS-PLGYRGLILTKLDETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEV 179
|
170
....*....|
gi 15239909 287 FDAKPFVSRL 296
Cdd:cd17873 180 ASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
34-298 |
2.77e-15 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 77.63 E-value: 2.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 34 EITRALLQSDVSFPLVKEMqtnIKKIVNLEDLAAGHNKRRIIEQaifseLCKMLDPGKSAFAPKKakpSVVMFVGlqgev 113
Cdd:PRK05703 165 ELYKRLKRSGLSPEIAEKL---LKLLLEHMPPRERTAWRYLLEL-----LANMIPVRVEDILKQG---GVVALVG----- 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 114 lekpqlvP----------------SMLIiirrKGYKPALVCADTFRAGAFDQLKQNATKSKIpyygsytgsdPVKIAVEG 177
Cdd:PRK05703 229 -------PtgvgktttlaklaaryALLY----GKKKVALITLDTYRIGAVEQLKTYAKIMGI----------PVEVVYDP 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 178 VDrFKKE-----NCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIF-VMdSSIGQ-----TAFEQaraFKQtVAVGA 246
Cdd:PRK05703 288 KE-LAKAleqlrDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYlVL-SATTKyedlkDIYKH---FSR-LPLDG 361
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 15239909 247 VIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHM-DEFEVFDAKPFVSRLLG 298
Cdd:PRK05703 362 LIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
2.01e-13 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 65.18 E-value: 2.01e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15239909 6 LGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKK-IVNLEDLaaghNKRRIIEQAIFSEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREkAVGEKKL----KPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
2.27e-09 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 53.71 E-value: 2.27e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15239909 10 IMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEqAIFSELCKML 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEVLKGLTPKQEVKK-ILKEELVKIL 77
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
34-195 |
1.22e-08 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 56.19 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 34 EITRALLQSDVSFPLVKEMqtnikkivnLEDLAAGHNKRRIIEQaIFSELCKMLdPGKSAFAPKKAKPSVVMFVGLQGeV 113
Cdd:TIGR03499 138 KLYERLLEAGVSEELAREL---------LEKLPEDADAEDAWRW-LREALEGML-PVKPEEDPILEQGGVIALVGPTG-V 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 114 -----LEK--PQLVpsmliiIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDpvkiAVEGVDRFKkeNC 186
Cdd:TIGR03499 206 gktttLAKlaARFA------LEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE----LREALDRLR--DK 273
|
....*....
gi 15239909 187 DLIIVDTSG 195
Cdd:TIGR03499 274 DLILIDTAG 282
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
135-283 |
7.96e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 54.36 E-value: 7.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 135 ALVCADTFRAGAFDQLKQNATKSKIPYYgsyTGSDPVKIAvEGVDRFKKENC-DLIIVDTSGRHKQQASLFEEMRQISEA 213
Cdd:PRK12726 238 GFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAELE-EAVQYMTYVNCvDHILIDTVGRNYLAEESVSEISAYTDV 313
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 214 TKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDE 283
Cdd:PRK12726 314 VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
126-326 |
4.15e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 52.03 E-value: 4.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 126 IIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDpVKIAVEGVdrfkkENCDLIIVDTSGRHKQQASLFE 205
Cdd:PRK14722 162 VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-LQLALAEL-----RNKHMVLIDTIGMSQRDRTVSD 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 206 EMRQISEATKPDLVIFVMD-SSIGQTAFEQARAFKQTVA--------VGAVIITKMDGHAKGGGTLSAVAATKSPVIFIG 276
Cdd:PRK14722 236 QIAMLHGADTPVQRLLLLNaTSHGDTLNEVVQAYRSAAGqpkaalpdLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVS 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 15239909 277 TGEHMDEFEVFDAKPFVSRllgngdmSGFVNKLQE--VVPKDQQ-PELLEMLS 326
Cdd:PRK14722 316 TGQKVPENLYVATKKFLLK-------SAFCAPREDspFVPHDDDlPAMLSALS 361
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
133-297 |
8.99e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 48.26 E-value: 8.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 133 KPALVCADTFRAGAFDQLKqnatkskipYYGSYTGSdPVKiAVEGVD--RF---KKENCDLIIVDTSGRHKQQASLFEEM 207
Cdd:PRK14723 217 QLALLTTDSFRIGALEQLR---------IYGRILGV-PVH-AVKDAAdlRFalaALGDKHLVLIDTVGMSQRDRNVSEQI 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 208 RQISEATKPDLVIFVMD-SSIGQTAFEQARAFKQTVA--VGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDE- 283
Cdd:PRK14723 286 AMLCGVGRPVRRLLLLNaASHGDTLNEVVHAYRHGAGedVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKVPEh 365
|
170
....*....|....
gi 15239909 284 FEVFDAKPFVSRLL 297
Cdd:PRK14723 366 LELAQADELVDRAF 379
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
136-279 |
4.11e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 45.83 E-value: 4.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 136 LVCADTFRAGAFDQLKQNATKskipyygsyTGSDPVKIAVEG-----VDRFKKE-NCDLIIVDTSGRHKQQASLFEEMRQ 209
Cdd:PRK11889 274 FITTDHSRIGTVQQLQDYVKT---------IGFEVIAVRDEAamtraLTYFKEEaRVDYILIDTAGKNYRASETVEEMIE 344
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15239909 210 ISEATKPDLVIFVMDSSI-GQTAFEQARAFKQtVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGE 279
Cdd:PRK11889 345 TMGQVEPDYICLTLSASMkSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
181-279 |
1.32e-04 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 43.58 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 181 FKKE-NCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGG 259
Cdd:PRK06731 149 FKEEaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 228
|
90 100
....*....|....*....|
gi 15239909 260 GTLSAVAATKSPVIFIGTGE 279
Cdd:PRK06731 229 ELLKIPAVSSAPIVLMTDGQ 248
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
32-310 |
2.65e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 43.35 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 32 LNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLaagHNKRRIIEQAI--FSELCKMLDPgksafAPKKAKPSVVMFVGL 109
Cdd:PRK12723 111 ILKIEDILRENDFSESYIKDINEFIKKEFSLSDL---DDYDKVRDSVIiyIAKTIKCSGS-----IIDNLKKRVFILVGP 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 110 QGevLEKPQLVPSMLII----IRRKGYKPALVCADTFRAGAfdqlkqnatKSKIPYYGSYTGSdPVKiAVEGVDRFKKE- 184
Cdd:PRK12723 183 TG--VGKTTTIAKLAAIyginSDDKSLNIKIITIDNYRIGA---------KKQIQTYGDIMGI-PVK-AIESFKDLKEEi 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 185 ----NCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTA-----FEQARAFKQTvavgAVIITKMDGH 255
Cdd:PRK12723 250 tqskDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSdvkeiFHQFSPFSYK----TVIFTKLDET 325
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 15239909 256 AKGGGTLSAVAATKSPVIFIGTGEHMDEfEVFDAKP--FVSRLLGN--GDMSGFVNKLQ 310
Cdd:PRK12723 326 TCVGNLISLIYEMRKEVSYVTDGQIVPH-NISIAEPltFIKKINGYriSDDAEFIRKLK 383
|
|
| Era_like |
cd00880 |
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family ... |
169-253 |
1.95e-03 |
|
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.
Pssm-ID: 206646 [Multi-domain] Cd Length: 161 Bit Score: 39.15 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 169 DPVKIAVEgvdrfKKENCDLIIVDTSGRH---KQQASLFEEMRQisEATKPDLVIFVMDSSIGQTAFEQ--ARAFKQTVA 243
Cdd:cd00880 34 DPVRKEWE-----LLPLGPVVLIDTPGLDeegGLGRERVEEARQ--VADRADLVLLVVDSDLTPVEEEAklGLLRERGKP 106
|
90
....*....|
gi 15239909 244 VgAVIITKMD 253
Cdd:cd00880 107 V-LLVLNKID 115
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
126-283 |
2.09e-03 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 40.32 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 126 IIRRKGYKPALVCADTFRAGAFDQLKqnatkskipYYGSYTGsdpvkIAVEGVdrfkKENCDL------------IIVDT 193
Cdd:PRK14721 216 VIRHGADKVALLTTDSYRIGGHEQLR---------IYGKLLG-----VSVRSI----KDIADLqlmlhelrgkhmVLIDT 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 194 SGRHKQQASLFEEMRQISEA-TKPDLVIFVMDSSIGQTAFEQARAFKQTvAVGAVIITKMDGHAKGGGTLSAVAATKSPV 272
Cdd:PRK14721 278 VGMSQRDQMLAEQIAMLSQCgTQVKHLLLLNATSSGDTLDEVISAYQGH-GIHGCIITKVDEAASLGIALDAVIRRKLVL 356
|
170
....*....|.
gi 15239909 273 IFIGTGEHMDE 283
Cdd:PRK14721 357 HYVTNGQKVPE 367
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
21-212 |
6.86e-03 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 38.79 E-value: 6.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 21 TIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNkrrIIEQAI-FSELCKMLDPGKSAFAPKKa 99
Cdd:PRK12724 146 TTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHN---VTERAVtYLEERVSVDSDLFSGTGKN- 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239909 100 KPSVVMFVGL--QGEVLEKPQLVPSMLIiirRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYgsytgsdpvkiAVEG 177
Cdd:PRK12724 222 QRKVVFFVGPtgSGKTTSIAKLAAKYFL---HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----------PVKD 287
|
170 180 190
....*....|....*....|....*....|....*....
gi 15239909 178 VDRFK----KENCDLIIVDTSGRHKQQASLFEEMRQISE 212
Cdd:PRK12724 288 IKKFKetlaRDGSELILIDTAGYSHRNLEQLERMQSFYS 326
|
|
| |
