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Conserved domains on  [gi|15239855|ref|NP_199744|]
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myb domain protein 111 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1000535)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may be involved in the regulation of gene expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 5-116 1.96e-59

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 191.83  E-value: 1.96e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239855    5 PCCEKIGLKRGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINYLRRDLKRGNITSDEEEIIVKLHSL 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRL 95

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15239855   85 LGNRWSLIATHLPGRTDNEIKNYWNSHLSRKI 116
Cdd:PLN03212  96 LGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-116 1.96e-59

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 191.83  E-value: 1.96e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239855    5 PCCEKIGLKRGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINYLRRDLKRGNITSDEEEIIVKLHSL 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRL 95

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15239855   85 LGNRWSLIATHLPGRTDNEIKNYWNSHLSRKI 116
Cdd:PLN03212  96 LGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-110 1.05e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 77.91  E-value: 1.05e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239855  12 LKRGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGLlRCGKSCRLRWINYLRRDLKRGNITSDEEEIIVKLHSLLGNRWSL 91
Cdd:COG5147  18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96

                        90
                ....*....|....*....
gi 15239855  92 IATHLPGRTDNEIKNYWNS 110
Cdd:COG5147  97 IADYKDRRTAQQCVERYVN 115
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-112 1.94e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.45  E-value: 1.94e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15239855    67 RGNITSDEEEIIVKLHSLLGNRWSLIATHLPGRTDNEIKNYWNSHL 112
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 9.58e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 9.58e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15239855     67 RGNITSDEEEIIVKLHSLLG-NRWSLIATHLPGRTDNEIKNYWNSHLSR 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-112 3.97e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 54.50  E-value: 3.97e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15239855  71 TSDEEEIIVKLHSLLG-NRWSLIATHLPGRTDNEIKNYWNSHL 112
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-116 1.96e-59

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 191.83  E-value: 1.96e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239855    5 PCCEKIGLKRGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINYLRRDLKRGNITSDEEEIIVKLHSL 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRL 95

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15239855   85 LGNRWSLIATHLPGRTDNEIKNYWNSHLSRKI 116
Cdd:PLN03212  96 LGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127
PLN03091 PLN03091
hypothetical protein; Provisional
 1-116 6.51e-54

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 183.25  E-value: 6.51e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239855    1 MGRAPCCEKIGLKRGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINYLRRDLKRGNITSDEEEIIVK 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 15239855   81 LHSLLGNRWSLIATHLPGRTDNEIKNYWNSHLSRKI 116
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-110 1.05e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 77.91  E-value: 1.05e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239855  12 LKRGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGLlRCGKSCRLRWINYLRRDLKRGNITSDEEEIIVKLHSLLGNRWSL 91
Cdd:COG5147  18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96

                        90
                ....*....|....*....
gi 15239855  92 IATHLPGRTDNEIKNYWNS 110
Cdd:COG5147  97 IADYKDRRTAQQCVERYVN 115
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-112 1.94e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.45  E-value: 1.94e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15239855    67 RGNITSDEEEIIVKLHSLLGNRWSLIATHLPGRTDNEIKNYWNSHL 112
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-61 7.31e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 56.74  E-value: 7.31e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15239855    14 RGRWTAEEDEILTKYIQTNGeGSWRSLPKKAGlLRCGKSCRLRWINYL 61
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 9.58e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 9.58e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15239855     67 RGNITSDEEEIIVKLHSLLG-NRWSLIATHLPGRTDNEIKNYWNSHLSR 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-112 3.97e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 54.50  E-value: 3.97e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15239855  71 TSDEEEIIVKLHSLLG-NRWSLIATHLPGRTDNEIKNYWNSHL 112
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 4.07e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 51.84  E-value: 4.07e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15239855     14 RGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGlLRCGKSCRLRWINYLRR 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-61 1.89e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 49.88  E-value: 1.89e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15239855  16 RWTAEEDEILTKYIQTNGEGSWRSLPKKAGlLRCGKSCRLRWINYL 61
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 71-117 6.66e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 48.85  E-value: 6.66e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15239855    71 TSDEEEIIVKLHSLLGNRWSLIATHLPGRTDNEIKNYWNSHLSRKIY 117
Cdd:pfam13921   2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKIS 48
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-76 1.11e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 45.38  E-value: 1.11e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239855    17 WTAEEDEILTKYIQTNGeGSWRSLPKKAGLlRCGKSCRLRWINYLRRDLKRGNITSDEEE 76
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGR-RTPKQCFDRWRRKLNPKISRGPWSKEEDQ 58
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 13-100 2.75e-04

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 42.47  E-value: 2.75e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239855  13 KRGRWTAEEDEILTKyIQTNGEGSWrslpKKAGLLRCGK--SCRLRWINYLRR--DLKRGNITSDEEEIIVKLHSLLGN- 87
Cdd:COG5147 290 QRGKWTKEEEQELAK-LVVEHGGSW----TEIGKLLGRMpnDCRDRWRDYVKCgdTLKRNRWSIEEEELLDKVVNEMRLe 364

                        90       100
                ....*....|....*....|
gi 15239855  88 -------RWSLIATHLPGRT 100
Cdd:COG5147 365 aqqssriLWLLIAQNIRNRL 384
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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