|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
15-446 |
2.13e-77 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 254.80 E-value: 2.13e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 15 LISKC---KSLQNLKQIHAQIITIGLSHHTYPLSKLLhLSSTVC--LSYALSILRQIPNPSVFLYNTLISSIVsnhNSTQ 89
Cdd:PLN03081 129 LVEACialKSIRCVKAVYWHVESSGFEPDQYMMNRVL-LMHVKCgmLIDARRLFDEMPERNLASWGTIIGGLV---DAGN 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 90 THLAFSLYDQILSSRSNfvrPNEFTYPSLFKASGfdAQWH-RHGRALHAHVLKFlePVNHDRFVQAALVGFYANCGKLRE 168
Cdd:PLN03081 205 YREAFALFREMWEDGSD---AEPRTFVVMLRASA--GLGSaRAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIED 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 169 ARSLFERIREPDLATWNTLLAAYANSeeiDSDEEVLLLFMRMQ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKN 245
Cdd:PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALH---GYSEEALCLYYEMRdsgVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 246 NLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTIS 325
Cdd:PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 326 ACSHSGLVDEGLQIFNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERGE 405
Cdd:PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 15239985 406 IALKHLLGLEFENSGNYVLLSNIYAGVNRWTDVEKTRELMK 446
Cdd:PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
398-459 |
6.20e-18 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 77.58 E-value: 6.20e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15239985 398 HGDFERGEIALKHLLGLEFENSGNYVLLSNIYAGVNRWTDVEKTRELMKDHRVNKSPGISTL 459
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
284-317 |
5.89e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 40.13 E-value: 5.89e-05
10 20 30
....*....|....*....|....*....|....
gi 15239985 284 CYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDS 317
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
330-435 |
5.15e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.09 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 330 SGLVDEGLQIFNsmkAVYGIEPK-VEHYGCLVDLLGRSGRLEEAEECIKK-MPVKPNATLWRSFLGSSQTH-GDFERGEI 406
Cdd:COG4783 17 AGDYDEAEALLE---KALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEaLELDPDEPEARLNLGLALLKaGDYDEALA 93
|
90 100
....*....|....*....|....*....
gi 15239985 407 ALKHLLGLEFENSGNYVLLSNIYAGVNRW 435
Cdd:COG4783 94 LLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
15-446 |
2.13e-77 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 254.80 E-value: 2.13e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 15 LISKC---KSLQNLKQIHAQIITIGLSHHTYPLSKLLhLSSTVC--LSYALSILRQIPNPSVFLYNTLISSIVsnhNSTQ 89
Cdd:PLN03081 129 LVEACialKSIRCVKAVYWHVESSGFEPDQYMMNRVL-LMHVKCgmLIDARRLFDEMPERNLASWGTIIGGLV---DAGN 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 90 THLAFSLYDQILSSRSNfvrPNEFTYPSLFKASGfdAQWH-RHGRALHAHVLKFlePVNHDRFVQAALVGFYANCGKLRE 168
Cdd:PLN03081 205 YREAFALFREMWEDGSD---AEPRTFVVMLRASA--GLGSaRAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIED 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 169 ARSLFERIREPDLATWNTLLAAYANSeeiDSDEEVLLLFMRMQ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKN 245
Cdd:PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALH---GYSEEALCLYYEMRdsgVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 246 NLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTIS 325
Cdd:PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 326 ACSHSGLVDEGLQIFNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERGE 405
Cdd:PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 15239985 406 IALKHLLGLEFENSGNYVLLSNIYAGVNRWTDVEKTRELMK 446
Cdd:PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
14-457 |
5.59e-72 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 243.22 E-value: 5.59e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 14 NLISKCKSLQNL---KQIHAQIITIGLSHHTYPLSKLLHLSSTV-CLSYALSILRQIPNPSVFLYNTLISSIVSNHNSTQ 89
Cdd:PLN03077 293 SVISACELLGDErlgREMHGYVVKTGFAVDVSVCNSLIQMYLSLgSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 90 THLAFSLYDQilssrsNFVRPNEFTYPSLFKASGFDAQWHRhGRALHahvlKFLEPVNHDRFVQAA--LVGFYANCGKLR 167
Cdd:PLN03077 373 ALETYALMEQ------DNVSPDEITIASVLSACACLGDLDV-GVKLH----ELAERKGLISYVVVAnaLIEMYSKCKCID 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 168 EARSLFERIREPDLATWNTLLAAYA-NSEEIdsdeEVLLLF--MRMQVRPNELSLVALIKSCANLGEFVRGVWAHVYVLK 244
Cdd:PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRlNNRCF----EALIFFrqMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 245 NNLTLNQFVGTSLIDLYSKCGCLSFARKVFDeMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTI 324
Cdd:PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 325 SACSHSGLVDEGLQIFNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERG 404
Cdd:PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 15239985 405 EIALKHLLGLEFENSGNYVLLSNIYAGVNRWTDVEKTRELMKDHRVNKSPGIS 457
Cdd:PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
93-402 |
6.94e-38 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 147.30 E-value: 6.94e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 93 AFSLYDQILSSRsnfVRPNEFTYPSLFKASGFDAQWHRhGRALHAHVLKFLEPVNHDrfVQAALVGFYANCGKLREARSL 172
Cdd:PLN03077 171 ALCLYHRMLWAG---VRPDVYTFPCVLRTCGGIPDLAR-GREVHAHVVRFGFELDVD--VVNALITMYVKCGDVVSARLV 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 173 FERIREPDLATWNTLLAAYAnseEIDSDEEVLLLFMRM---QVRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTL 249
Cdd:PLN03077 245 FDRMPRRDCISWNAMISGYF---ENGECLEGLELFFTMrelSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 250 NQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSH 329
Cdd:PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15239985 330 SGLVDEGLQIfNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPVKpNATLWRSFL-GSSQTHGDFE 402
Cdd:PLN03077 402 LGDLDVGVKL-HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIaGLRLNNRCFE 473
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
102-382 |
1.48e-26 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 113.41 E-value: 1.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 102 SSRSNFVRPNEFTYPSLFKAsgfdAQWHR---HGRALHAHVLKflepvNHDRF---VQAALVGFYANCGKLREARSLFER 175
Cdd:PLN03077 76 SMQELRVPVDEDAYVALFRL----CEWKRaveEGSRVCSRALS-----SHPSLgvrLGNAMLSMFVRFGELVHAWYVFGK 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 176 IREPDLATWNTLLAAYANSEEIDsdeEVLLLFMRMQ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLNQF 252
Cdd:PLN03077 147 MPERDLFSWNVLVGGYAKAGYFD---EALCLYHRMLwagVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 253 VGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGL 332
Cdd:PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 15239985 333 VDEGLQIfNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPVK 382
Cdd:PLN03077 304 ERLGREM-HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
398-459 |
6.20e-18 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 77.58 E-value: 6.20e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15239985 398 HGDFERGEIALKHLLGLEFENSGNYVLLSNIYAGVNRWTDVEKTRELMKDHRVNKSPGISTL 459
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
159-379 |
3.45e-14 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 75.30 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 159 FYANCGKLR---EARSLFERIREPDLATWNTLLAAYANSEEIDSDEEVLllfmrmqvrpnelslvALIKScanlgefvRG 235
Cdd:PLN03218 412 FFKACKKQRavkEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVL----------------RLVQE--------AG 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 236 vwahvyvLKNNLTLNqfvgTSLIDLYSKCGCLSFARKVFDEMS----QRDVSCYNAMIRGLAVHG-----FGQEGIelyk 306
Cdd:PLN03218 468 -------LKADCKLY----TTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGCARAGqvakaFGAYGI---- 532
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15239985 307 sLISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSMKA-VYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKM 379
Cdd:PLN03218 533 -MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
201-405 |
3.73e-12 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 68.72 E-value: 3.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 201 EEVLLLFMRMQ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEM 277
Cdd:PLN03077 68 EQALKLLESMQelrVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 278 SQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACshSGLVD--EGLQIfNSMKAVYGIEPKVEH 355
Cdd:PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGIPDlaRGREV-HAHVVRFGFELDVDV 224
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 15239985 356 YGCLVDLLGRSGRLEEAEECIKKMPVKpNATLWRSFLGssqthGDFERGE 405
Cdd:PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMIS-----GYFENGE 268
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
178-393 |
1.12e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 54.50 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 178 EPDLATWNTLLAAYANSEEIDSDEEVLLLfMRMQ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLNQFVG 254
Cdd:PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAE-MKAEthpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 255 TSLIDLYSKCGCLSFARKVFDEMSQRDVS----CYNAMI-----RGLAVHGFG--------------------------- 298
Cdd:PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKpdevFFSALVdvaghAGDLDKAFEilqdarkqgiklgtvsysslmgacsna 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 299 ---QEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSMKAVyGIEPKVEHYGCLVDLLGRSGRLEEAEEC 375
Cdd:PLN03218 698 knwKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDL 776
|
250 260
....*....|....*....|.
gi 15239985 376 I---KKMPVKPNATLWRSFLG 393
Cdd:PLN03218 777 LsqaKEDGIKPNLVMCRCITG 797
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
280-329 |
1.16e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 42.35 E-value: 1.16e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15239985 280 RDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSH 329
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
284-317 |
5.89e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 40.13 E-value: 5.89e-05
10 20 30
....*....|....*....|....*....|....
gi 15239985 284 CYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDS 317
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
255-293 |
1.61e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 39.27 E-value: 1.61e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 15239985 255 TSLIDLYSKCGCLSFARKVFDEMSQRDVSC----YNAMIRGLA 293
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRGVKPnvytYTILINGLC 49
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
69-121 |
2.36e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 38.88 E-value: 2.36e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 15239985 69 PSVFLYNTLISSIVSNHnstQTHLAFSLYDQILSSRsnfVRPNEFTYPSLFKA 121
Cdd:pfam13041 1 PDVVTYNTLINGYCKKG---KVEEAFKLFNEMKKRG---VKPNVYTYTILING 47
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
179-228 |
1.00e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.96 E-value: 1.00e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 15239985 179 PDLATWNTLLAAYANSEEIdsdEEVLLLFMRMQ---VRPNELSLVALIKSCAN 228
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKV---EEAFKLFNEMKkrgVKPNVYTYTILINGLCK 50
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
255-282 |
3.47e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 34.75 E-value: 3.47e-03
10 20
....*....|....*....|....*...
gi 15239985 255 TSLIDLYSKCGCLSFARKVFDEMSQRDV 282
Cdd:pfam01535 4 NSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
283-313 |
5.15e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 34.36 E-value: 5.15e-03
10 20 30
....*....|....*....|....*....|.
gi 15239985 283 SCYNAMIRGLAVHGFGQEGIELYKSLISQGL 313
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
330-435 |
5.15e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.09 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239985 330 SGLVDEGLQIFNsmkAVYGIEPK-VEHYGCLVDLLGRSGRLEEAEECIKK-MPVKPNATLWRSFLGSSQTH-GDFERGEI 406
Cdd:COG4783 17 AGDYDEAEALLE---KALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEaLELDPDEPEARLNLGLALLKaGDYDEALA 93
|
90 100
....*....|....*....|....*....
gi 15239985 407 ALKHLLGLEFENSGNYVLLSNIYAGVNRW 435
Cdd:COG4783 94 LLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
|
| |
