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Conserved domains on  [gi|15238073|ref|NP_198957|]
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POX (plant homeobox) family protein [Arabidopsis thaliana]

Protein Classification

POX and homeodomain domain-containing protein( domain architecture ID 11273480)

POX and homeodomain domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
POX smart00574
domain associated with HOX domains;
192-338 6.38e-52

domain associated with HOX domains;


:

Pssm-ID: 214728  Cd Length: 140  Bit Score: 174.87  E-value: 6.38e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238073    192 FQIGSSKYLSPAQELLSEFCSLGVKESDEEVMMMKHKKkqkgkqqeewdTSHHSNNDQHDQSATTSSKKHVPPLHSLEFM 271
Cdd:smart00574   5 FILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSP-----------VSTSSNEGGGENLSGGSSSSEVPPLSTAERQ 73

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15238073    272 ELQKRKAKLLSMLEELKRRYGHYREQMRVAAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLVG 338
Cdd:smart00574  74 ELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIAG 140
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 410-448 1.65e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


:

Pssm-ID: 428673  Cd Length: 39  Bit Score: 76.02  E-value: 1.65e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15238073   410 LFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 448
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
 
Name Accession Description Interval E-value
POX smart00574
domain associated with HOX domains;
192-338 6.38e-52

domain associated with HOX domains;


Pssm-ID: 214728  Cd Length: 140  Bit Score: 174.87  E-value: 6.38e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238073    192 FQIGSSKYLSPAQELLSEFCSLGVKESDEEVMMMKHKKkqkgkqqeewdTSHHSNNDQHDQSATTSSKKHVPPLHSLEFM 271
Cdd:smart00574   5 FILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSP-----------VSTSSNEGGGENLSGGSSSSEVPPLSTAERQ 73

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15238073    272 ELQKRKAKLLSMLEELKRRYGHYREQMRVAAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLVG 338
Cdd:smart00574  74 ELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIAG 140
POX pfam07526
Associated with HOX; The function of this domain is unknown. It is often found in plant ...
 194-337 1.51e-39

Associated with HOX; The function of this domain is unknown. It is often found in plant proteins associated with pfam00046.


Pssm-ID: 429514  Cd Length: 139  Bit Score: 141.25  E-value: 1.51e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238073   194 IGSSKYLSPAQELLSEFCSLGVKE-----SDEEVMMMKHKKKQKGKQQEEWDTSHHSnndqhdqsattSSKKHVPPLHSL 268
Cdd:pfam07526   2 LLRSRYLKPAQELLDEVVSVGGKSiasksSSSSVSKKEDSEDGGSSQSGGGEGGGGS-----------SSGGGSPSLSSA 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238073   269 EFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLV 337
Cdd:pfam07526  71 ERQELQRKKAKLLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAKPYTALALRTISRHFRCLRDAIS 139
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 410-448 1.65e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 76.02  E-value: 1.65e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15238073   410 LFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 448
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 392-453 1.11e-10

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 57.25  E-value: 1.11e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15238073 392 WRPQRGLPERAVTTLRAWlFEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 453
Cdd:cd00086   1 RRKRTRFTPEQLEELEKE-FEK--NPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 398-450 6.42e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 52.25  E-value: 6.42e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15238073    398 LPERAVTTLRAWlFEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 450
Cdd:smart00389   8 FTPEQLEELEKE-FQK--NPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
POX smart00574
domain associated with HOX domains;
192-338 6.38e-52

domain associated with HOX domains;


Pssm-ID: 214728  Cd Length: 140  Bit Score: 174.87  E-value: 6.38e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238073    192 FQIGSSKYLSPAQELLSEFCSLGVKESDEEVMMMKHKKkqkgkqqeewdTSHHSNNDQHDQSATTSSKKHVPPLHSLEFM 271
Cdd:smart00574   5 FILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSP-----------VSTSSNEGGGENLSGGSSSSEVPPLSTAERQ 73

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15238073    272 ELQKRKAKLLSMLEELKRRYGHYREQMRVAAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLVG 338
Cdd:smart00574  74 ELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIAG 140
POX pfam07526
Associated with HOX; The function of this domain is unknown. It is often found in plant ...
 194-337 1.51e-39

Associated with HOX; The function of this domain is unknown. It is often found in plant proteins associated with pfam00046.


Pssm-ID: 429514  Cd Length: 139  Bit Score: 141.25  E-value: 1.51e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238073   194 IGSSKYLSPAQELLSEFCSLGVKE-----SDEEVMMMKHKKKQKGKQQEEWDTSHHSnndqhdqsattSSKKHVPPLHSL 268
Cdd:pfam07526   2 LLRSRYLKPAQELLDEVVSVGGKSiasksSSSSVSKKEDSEDGGSSQSGGGEGGGGS-----------SSGGGSPSLSSA 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238073   269 EFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLV 337
Cdd:pfam07526  71 ERQELQRKKAKLLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAKPYTALALRTISRHFRCLRDAIS 139
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 410-448 1.65e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 76.02  E-value: 1.65e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15238073   410 LFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 448
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 392-453 1.11e-10

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 57.25  E-value: 1.11e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15238073 392 WRPQRGLPERAVTTLRAWlFEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 453
Cdd:cd00086   1 RRKRTRFTPEQLEELEKE-FEK--NPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 398-450 6.42e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 52.25  E-value: 6.42e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15238073    398 LPERAVTTLRAWlFEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 450
Cdd:smart00389   8 FTPEQLEELEKE-FQK--NPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
416-451 4.18e-05

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 41.33  E-value: 4.18e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 15238073   416 HPYPSDVDKHILARQTGLSRSQVSNWFINARVRlWK 451
Cdd:pfam00046  22 NPYPSAEEREELAAQLGLTERQVKVWFQNRRAK-WK 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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