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Conserved domains on  [gi|15237525|ref|NP_198912|]
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transmembrane protein, putative (DUF 3339) [Arabidopsis thaliana]

Protein Classification

DUF3339 domain-containing protein( domain architecture ID 10570581)

DUF3339 domain-containing protein similar to Arabidopsis thaliana GPI-anchored-like protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3339 pfam11820
Protein of unknown function (DUF3339); This family of proteins are functionally ...
 2-67 5.37e-23

Protein of unknown function (DUF3339); This family of proteins are functionally uncharacterized. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.


:

Pssm-ID: 463361  Cd Length: 66  Bit Score: 82.23  E-value: 5.37e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15237525    2 HDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLVVLNVHVY 67
Cdd:pfam11820  1 ADWGPVVIAVVLFVLLSPGLLFQLPGKGRPVEFGNMQTSGASILVHALIFFALLTIFLVALGVHIY 66
 
Name Accession Description Interval E-value
DUF3339 pfam11820
Protein of unknown function (DUF3339); This family of proteins are functionally ...
 2-67 5.37e-23

Protein of unknown function (DUF3339); This family of proteins are functionally uncharacterized. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.


Pssm-ID: 463361  Cd Length: 66  Bit Score: 82.23  E-value: 5.37e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15237525    2 HDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLVVLNVHVY 67
Cdd:pfam11820  1 ADWGPVVIAVVLFVLLSPGLLFQLPGKGRPVEFGNMQTSGASILVHALIFFALLTIFLVALGVHIY 66
 
Name Accession Description Interval E-value
DUF3339 pfam11820
Protein of unknown function (DUF3339); This family of proteins are functionally ...
 2-67 5.37e-23

Protein of unknown function (DUF3339); This family of proteins are functionally uncharacterized. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.


Pssm-ID: 463361  Cd Length: 66  Bit Score: 82.23  E-value: 5.37e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15237525    2 HDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLVVLNVHVY 67
Cdd:pfam11820  1 ADWGPVVIAVVLFVLLSPGLLFQLPGKGRPVEFGNMQTSGASILVHALIFFALLTIFLVALGVHIY 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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