|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
76-608 |
9.38e-155 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 461.26 E-value: 9.38e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 76 YLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEvLSRMMIsEVGFRPNEVTFLSMISACVYGGSKEEGRC 155
Cdd:PLN03081 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA-LFREMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 156 IHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQ 235
Cdd:PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 236 ATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHG 315
Cdd:PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 316 FGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLI 395
Cdd:PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 396 KEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGC 475
Cdd:PLN03081 486 RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 476 SYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMkSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSP 555
Cdd:PLN03081 566 TWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI-SEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 79527297 556 MEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
Cdd:PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
34-606 |
3.34e-138 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 423.49 E-value: 3.34e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 34 VSSLIAAVKSCVSIELCRLLHCKVVKSvsyrhGFIGD-----QLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYS 108
Cdd:PLN03077 291 ITSVISACELLGDERLGREMHGYVVKT-----GFAVDvsvcnSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 109 GRGYLGKCFEVLSRMMISEVgfRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSS 188
Cdd:PLN03077 366 KNGLPDKALETYALMEQDNV--SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 189 CKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYF-NMSRRVghEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFS 267
Cdd:PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFrQMLLTL--KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 268 GNKCITTALLDLYSKLGRLEDSSTVFHeITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACS 347
Cdd:PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 348 HSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAA 427
Cdd:PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 428 ERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEI 507
Cdd:PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 508 RKKMKsEMGYKSKTEFVLHDVgEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRII 587
Cdd:PLN03077 761 YEKMK-ASGLAGSESSSMDEI-EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREIS 838
|
570
....*....|....*....
gi 79527297 588 IRDSKRFHHFLDGSCSCSD 606
Cdd:PLN03077 839 VRDTEQFHHFKDGECSCGD 857
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
516-608 |
7.80e-36 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 129.46 E-value: 7.80e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 516 GYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFH 595
Cdd:pfam14432 1 GYVPDLRFVLHDVDDEEKKQLLCGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIRGREIVVRDASRFH 80
|
90
....*....|...
gi 79527297 596 HFLDGSCSCSDYW 608
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
101-346 |
1.09e-20 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 96.84 E-value: 1.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 101 NSLISGYSGRGYLGKCFEVLSRMmiSEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYG 180
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESM--QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 181 KTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGL 260
Cdd:PLN03077 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 261 IMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFT 340
Cdd:PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
|
....*.
gi 79527297 341 HLLNAC 346
Cdd:PLN03077 293 SVISAC 298
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
417-479 |
5.57e-17 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 75.27 E-value: 5.57e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79527297 417 YKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIE 479
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
230-432 |
1.06e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 58.35 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 230 GHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITS------PDSMA 303
Cdd:PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAethpidPDHIT 581
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 304 WTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMsKRYRIDPRLDHYSCMVDLLG 383
Cdd:PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAG 660
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 79527297 384 RSGLLQDAYGLIKEMP---MEPSSGVWGALLGACRVYKDTQlgtKAAErLFE 432
Cdd:PLN03218 661 HAGDLDKAFEILQDARkqgIKLGTVSYSSLMGACSNAKNWK---KALE-LYE 708
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
299-348 |
8.44e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 48.90 E-value: 8.44e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 79527297 299 PDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSH 348
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
95-144 |
1.30e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 48.13 E-value: 1.30e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 79527297 95 RDLVSWNSLISGYSGRGYLGKCFEVLSRMmiSEVGFRPNEVTFLSMISAC 144
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEM--KKRGVKPNVYTYTILINGL 48
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
96-381 |
3.02e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 53.73 E-value: 3.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 96 DLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAF 175
Cdd:PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 176 INWYGKTGDLTSSCKLFEDLSiknlvswntmivihlqnglaEKGLAyfnmsrrvghePDQATFLAVLRSCEDMGVVRLAQ 255
Cdd:PLN03218 621 VNSCSQKGDWDFALSIYDDMK--------------------KKGVK-----------PDEVFFSALVDVAGHAGDLDKAF 669
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 256 GIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITS----PDSMAWTAMLAAYAThgfGRDAIKHFEL---MV 328
Cdd:PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSiklrPTVSTMNALITALCE---GNQLPKALEVlseMK 746
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 79527297 329 HYGISPDHVTFTHLLNACSHSGLVEEGKHYFETmSKRYRIDPRLDHYSCMVDL 381
Cdd:PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQ-AKEDGIKPNLVMCRCITGL 798
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
96-425 |
8.07e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 52.19 E-value: 8.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 96 DLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVgfRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAF 175
Cdd:PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV--EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 176 INWYGKTGDLTsscKLFEDLSikNLVSWNTMIvihlqnglaekglayfnmsrrvghEPDQATFLAVLRSCEDMGVVRLAQ 255
Cdd:PLN03218 549 ISACGQSGAVD---RAFDVLA--EMKAETHPI------------------------DPDHITVGALMKACANAGQVDRAK 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 256 GIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEIT----SPDSMAWTAMLAAyATHgfGRDAIKHFELMVHY- 330
Cdd:PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKkkgvKPDEVFFSALVDV-AGH--AGDLDKAFEILQDAr 676
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 331 --GISPDHVTFTHLLNACSHSGLVEEGKHYFETMsKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMP---MEPSSG 405
Cdd:PLN03218 677 kqGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKrlgLCPNTI 755
|
330 340
....*....|....*....|
gi 79527297 406 VWGALLGACRVYKDTQLGTK 425
Cdd:PLN03218 756 TYSILLVASERKDDADVGLD 775
|
|
| Eplus_motif |
pfam20430 |
E+ motif; This is the E+ motif found in some plant pentatricopeptide repeat (PPR) proteins ... |
484-511 |
5.05e-06 |
|
E+ motif; This is the E+ motif found in some plant pentatricopeptide repeat (PPR) proteins which contain a C-terminal DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E motif, precedes the DYW domain and, although their role is not clear, they are essential in th RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466579 [Multi-domain] Cd Length: 28 Bit Score: 43.42 E-value: 5.05e-06
10 20
....*....|....*....|....*...
gi 79527297 484 IHKFVVGDWSHPESEKIQKKLKEIRKKM 511
Cdd:pfam20430 1 TYTFFAGDKSHPESKQIYEKLSDLTQRI 28
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
232-431 |
3.43e-04 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 43.71 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 232 EPDQATF---LAVLRSCED----MGVVRLAQGihglimfGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITS----PD 300
Cdd:PLN03218 434 NPTLSTFnmlMSVCASSQDidgaLRVLRLVQE-------AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNagveAN 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79527297 301 SMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETM-SKRYRIDPrlDH--YSC 377
Cdd:PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHPIDP--DHitVGA 584
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 79527297 378 MVDLLGRSGLLQDA---YGLIKEMPMEPSSGVWGALLGAC----------RVYKD-TQLGTKAAERLF 431
Cdd:PLN03218 585 LMKACANAGQVDRAkevYQMIHEYNIKGTPEVYTIAVNSCsqkgdwdfalSIYDDmKKKGVKPDEVFF 652
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
87-145 |
1.28e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 37.34 E-value: 1.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79527297 87 KLFDEMPER----DLVSWNSLISGYSGRGYLGKCFEVLSRMmiSEVGFRPNEVTFLSMISACV 145
Cdd:pfam13812 1 SILREMVRDgiqlNVNTYTHLLHAYANVGNLKLALEIFERM--KKKGIKPTLDTYNAILGVIG 61
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
198-245 |
4.21e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 35.42 E-value: 4.21e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 79527297 198 KNLVSWNTMIVIHLQNGLAEKGLAYFN-MSRRvGHEPDQATFLAVLRSC 245
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNeMKKR-GVKPNVYTYTILINGL 48
|
|
| |
