NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15242446|ref|NP_198787|]
View 

Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 172-562 5.09e-44

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 171.21  E-value: 5.09e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   172 YNAVLDATIRSKRNISFAENVFKEMLESQVSpnvfTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC 251
Cdd:PLN03218  408 YHAKFFKACKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   252 KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Cdd:PLN03218  484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   332 MHAEML--RHGLTPSVITYTSLIHSMCKAGNMNRAMefldqmrvrglcpnertyttlvdgfsqkgymnEAYRVLREMNDN 409
Cdd:PLN03218  564 VLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAK--------------------------------EVYQMIHEYNIK 611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   410 GFsPSVvtYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489
Cdd:PLN03218  612 GT-PEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242446   490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCmEGD-LEKALQLHNEMVEKGVLPDVVTYSVLI 562
Cdd:PLN03218  689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC-EGNqLPKALEVLSEMKRLGLCPNTITYSILL 761
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 610-652 3.40e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.14  E-value: 3.40e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15242446   610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCR 652
Cdd:pfam13041   8 TLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 638-687 3.37e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.05  E-value: 3.37e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHK 687
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR super family cl29710
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 549-578 4.33e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam12854:

Pssm-ID: 421891 [Multi-domain]  Cd Length: 34  Bit Score: 40.79  E-value: 4.33e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   549 KGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELL 30
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 172-562 5.09e-44

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 171.21  E-value: 5.09e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   172 YNAVLDATIRSKRNISFAENVFKEMLESQVSpnvfTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC 251
Cdd:PLN03218  408 YHAKFFKACKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   252 KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Cdd:PLN03218  484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   332 MHAEML--RHGLTPSVITYTSLIHSMCKAGNMNRAMefldqmrvrglcpnertyttlvdgfsqkgymnEAYRVLREMNDN 409
Cdd:PLN03218  564 VLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAK--------------------------------EVYQMIHEYNIK 611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   410 GFsPSVvtYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489
Cdd:PLN03218  612 GT-PEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242446   490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCmEGD-LEKALQLHNEMVEKGVLPDVVTYSVLI 562
Cdd:PLN03218  689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC-EGNqLPKALEVLSEMKRLGLCPNTITYSILL 761
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 203-252 2.55e-18

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 78.94  E-value: 2.55e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 610-652 3.40e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.14  E-value: 3.40e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15242446   610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCR 652
Cdd:pfam13041   8 TLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 521-555 1.39e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 50.92  E-value: 1.39e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   521 FTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 638-687 3.37e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.05  E-value: 3.37e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHK 687
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 642-671 4.95e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 4.95e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSGF 671
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 549-578 4.33e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.79  E-value: 4.33e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   549 KGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELL 30
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 429-703 3.02e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 3.02e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446 429 GKMEDAIAVLEDMKEkgLSPDVVS-YSTVLSGFCRSYDVDEALRVKREMVEkgIKPDTIT-YSSLIQGFCEQRRTKEACD 506
Cdd:COG2956  22 GQPDKAIDLLEEALE--LDPETVEaHLALGNLYRRRGEYDRAIRIHQKLLE--RDPDRAEaLLELAQDYLKAGLLDRAEE 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446 507 LYEEMLRVGlPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGvLPDVVTYSVLINGLNKQSRTREAKRLLLKLFyeES 586
Cdd:COG2956  98 LLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKAL--KL 173

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446 587 VPSDVTYHTLIencSNIEFKsvvslikgfcmKGMMTEADQVFESMLGKNHKpDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666
Cdd:COG2956 174 DPDCARALLLL---AELYLE-----------QGDYEEAIAALERALEQDPD-YLPALPRLAELYEKLGDPEEALELLRKA 238

                       250       260       270
                ....*....|....*....|....*....|....*..
gi 15242446 667 VKSGFLLHtvTVIALVKALHKEGKVNELNSVIVHVLR 703
Cdd:COG2956 239 LELDPSDD--LLLALADLLERKEGLEAALALLERQLR 273
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 610-639 3.03e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.03e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   610 SLIKGFCMKGMMTEADQVFESMLGKNHKPD 639
Cdd:TIGR00756   5 TLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 172-562 5.09e-44

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 171.21  E-value: 5.09e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   172 YNAVLDATIRSKRNISFAENVFKEMLESQVSpnvfTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC 251
Cdd:PLN03218  408 YHAKFFKACKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   252 KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Cdd:PLN03218  484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   332 MHAEML--RHGLTPSVITYTSLIHSMCKAGNMNRAMefldqmrvrglcpnertyttlvdgfsqkgymnEAYRVLREMNDN 409
Cdd:PLN03218  564 VLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAK--------------------------------EVYQMIHEYNIK 611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   410 GFsPSVvtYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489
Cdd:PLN03218  612 GT-PEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15242446   490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCmEGD-LEKALQLHNEMVEKGVLPDVVTYSVLI 562
Cdd:PLN03218  689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC-EGNqLPKALEVLSEMKRLGLCPNTITYSILL 761
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 278-744 4.13e-36

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 146.56  E-value: 4.13e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   278 YNVVINGLCREGRMKEVSFVLTEMNRRG-YSLDEVTYNTLIKGYCKEGNFHQAlVMHAEMLRhglTPSVITYTSLIHSMC 356
Cdd:PLN03218  373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGlLDMDKIYHAKFFKACKKQRAVKEA-FRFAKLIR---NPTLSTFNMLMSVCA 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436
Cdd:PLN03218  449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV--EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514
Cdd:PLN03218  529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   515 GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYH 594
Cdd:PLN03218  609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   595 TLIENCSNIefksvvslikgfcmkGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLH 674
Cdd:PLN03218  689 SLMGACSNA---------------KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   675 TVTVIALVKAlhkegkvnelnsvivhvlrsCElseaeqakvlveinhREGNMDVVLDVLAEMAKDGFLPN 744
Cdd:PLN03218  754 TITYSILLVA--------------------SE---------------RKDDADVGLDLLSQAKEDGIKPN 788
PLN03077 PLN03077
Protein ECB2; Provisional
 137-666 3.25e-32

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 134.21  E-value: 3.25e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLdATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFC 216
Cdd:PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL-RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  217 FAGNIDVALTLFDKMETKGClpnvVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING---LCREGRMKE 293
Cdd:PLN03077 234 KCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAcelLGDERLGRE 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  294 V-SFVLtemnRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLrhglTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Cdd:PLN03077 310 MhGYVV----KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALME 381

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRvLREMNDN-GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKglspDVV 451
Cdd:PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVK-LHELAERkGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVI 456

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  452 SYSTVLSGFCRSYDVDEALRVKREMVEKgIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYC 531
Cdd:PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  532 MEGDLEKALQLHNEMvEKgvlpDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNiefksvvsl 611
Cdd:PLN03077 536 RCGRMNYAWNQFNSH-EK----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR--------- 601

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15242446  612 ikgfcmKGMMTEADQVFESMLGKNH-KPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666
Cdd:PLN03077 602 ------SGMVTQGLEYFHSMEEKYSiTPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
PLN03077 PLN03077
Protein ECB2; Provisional
 173-693 3.81e-30

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 127.66  E-value: 3.81e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  173 NAVLDATIRSKrNISFAENVFKEMLESqvspNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNtlidgyCK 252
Cdd:PLN03077 125 NAMLSMFVRFG-ELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP------CV 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  253 LRKIDDGFKLLRSMALK------GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRgyslDEVTYNTLIKGYCKEGNF 326
Cdd:PLN03077 194 LRTCGGIPDLARGREVHahvvrfGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGEC 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  327 HQALVMHAEMLRHGLTPSVITYTSLIhsmckagnmnRAMEFLdqmrvrglcpNERTYTTLVDGFSQKgymneayrvlrem 406
Cdd:PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVI----------SACELL----------GDERLGREMHGYVVK------------- 316

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  407 ndNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKglspDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486
Cdd:PLN03077 317 --TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKgvlpDVVTYSVLINGLN 566
Cdd:PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLR 466

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  567 KQSRTREA----KRLLLKLfyeesVPSDVTYHTLIENCSNI-------EFKSVV-------------SLIKGFCMKGMMT 622
Cdd:PLN03077 467 LNNRCFEAliffRQMLLTL-----KPNSVTLIAALSACARIgalmcgkEIHAHVlrtgigfdgflpnALLDLYVRCGRMN 541

                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15242446  623 EADQVFESmlgknHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNE 693
Cdd:PLN03077 542 YAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 134-581 4.62e-28

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 120.36  E-value: 4.62e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  134 SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISfAENVFKEMLESqvspNVFTYNILIR 213
Cdd:PLN03081 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID-ARRLFDEMPER----NLASWGTIIG 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  214 GFCFAGNIDVALTLFDKM--ETKGCLPNVV-------------------------------TYNT--LIDGYCKLRKIDD 258
Cdd:PLN03081 198 GLVDAGNYREAFALFREMweDGSDAEPRTFvvmlrasaglgsaragqqlhccvlktgvvgdTFVScaLIDMYSKCGDIED 277

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  259 GFKLLRSMAlkglEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338
Cdd:PLN03081 278 ARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  339 HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRglcpnertyttlvdgfsqkgymneayrvlremndngfspSVVTY 418
Cdd:PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---------------------------------------NLISW 394

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE-KGIKPDTITYSSLIQGFCE 497
Cdd:PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEnHRIKPRAMHYACMIELLGR 474

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  498 QRRTKEAcdlYEEMLRVGLPPDEFTYTALINAYCMEGDLE----KALQLHNEMVEKgvlpdVVTYSVLINGLNKQSRTRE 573
Cdd:PLN03081 475 EGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKNLElgrlAAEKLYGMGPEK-----LNNYVVLLNLYNSSGRQAE 546


                 ....*...
gi 15242446  574 AKRLLLKL 581
Cdd:PLN03081 547 AAKVVETL 554
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 212-598 1.18e-24

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 109.57  E-value: 1.18e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  212 IRGFCFAGNIDVALTLFDKMETKGCLP-NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290
Cdd:PLN03081  94 IEKLVACGRHREALELFEILEAGCPFTlPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  291 MKEVSFVLTEMNRRgyslDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMnRAMEFLDQ 370
Cdd:PLN03081 174 LIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHC 248

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  371 MRVR-GLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNgfspSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449
Cdd:PLN03081 249 CVLKtGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLppdeFTYTALINA 529
Cdd:PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAG 400

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  530 YCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESV-PSDVTYHTLIE 598
Cdd:PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIkPRAMHYACMIE 470
PLN03077 PLN03077
Protein ECB2; Provisional
 204-599 4.72e-21

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 98.77  E-value: 4.72e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKgclpNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Cdd:PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  284 GLCREGRMkEVSFVLTEM-NRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHgltpSVITYTSLIHSMCKAGNMN 362
Cdd:PLN03077 398 ACACLGDL-DVGVKLHELaERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCF 472

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  363 RAMEFLDQMRVRgLCPNERTYTTLVDGFSQKGYMN-----EAYrVLRE-MNDNGFSPsvvtyNALINGHCVTGKMEDAIA 436
Cdd:PLN03077 473 EALIFFRQMLLT-LKPNSVTLIAALSACARIGALMcgkeiHAH-VLRTgIGFDGFLP-----NALLDLYVRCGRMNYAWN 545

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  437 VLeDMKEKglspDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM-LRVG 515
Cdd:PLN03077 546 QF-NSHEK----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMeEKYS 620

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMvekGVLPDVVTYSVLINGLnKQSRTREAKRLLLKLFYEESvPSDVTYHT 595
Cdd:PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELD-PNSVGYYI 695


                 ....
gi 15242446  596 LIEN 599
Cdd:PLN03077 696 LLCN 699
PLN03077 PLN03077
Protein ECB2; Provisional
 147-484 1.43e-20

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 97.23  E-value: 1.43e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRnISFAENVFKEMLESqvspNVFTYNILIRGFCFAGNIDVALT 226
Cdd:PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-IDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALI 476

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  227 LFDKMETKgCLPNVVTYNTLIDGYCKLRKIDDGFKL----LRS-MALKGLEPNLIsynvvINGLCREGRMkevSFVLTEM 301
Cdd:PLN03077 477 FFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIhahvLRTgIGFDGFLPNAL-----LDLYVRCGRM---NYAWNQF 547

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  302 NrrGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR-GLCPNE 380
Cdd:PLN03077 548 N--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNL 625

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  381 RTYTTLVDGFSQKGYMNEAYRVLREMNdngFSPSVVTYNALING-----HCVTGKMEdAIAVLEdmkekgLSPDVVSYST 455
Cdd:PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAcrihrHVELGELA-AQHIFE------LDPNSVGYYI 695

                        330       340       350
                 ....*....|....*....|....*....|...
gi 15242446  456 VLsgfCRSY----DVDEALRVKREMVEKGIKPD 484
Cdd:PLN03077 696 LL---CNLYadagKWDEVARVRKTMRENGLTVD 725
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 332-698 2.04e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 93.40  E-value: 2.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   332 MHAEMLRHGLTP--SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY-TTLVDGFSQKGYMNEAYRVLREMND 408
Cdd:PLN03218  355 NSLAAYNGGVSGkrKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYhAKFFKACKKQRAVKEAFRFAKLIRN 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   409 ngfsPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488
Cdd:PLN03218  435 ----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   489 SSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMvekgvlpdvvtysvlinglnkq 568
Cdd:PLN03218  511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM---------------------- 568

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   569 srTREAKRLLlklfyeesvPSDVTYHTLIENCSNiefksvvslikgfcmKGMMTEADQVFESMLGKNHKPDGTAYNIMIH 648
Cdd:PLN03218  569 --KAETHPID---------PDHITVGALMKACAN---------------AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   649 GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVI 698
Cdd:PLN03218  623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 203-252 2.55e-18

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 78.94  E-value: 2.55e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 282-664 4.11e-18

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 88.77  E-value: 4.11e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  282 INGLCREGRMKEvSFVLTEMNRRG--YSLDEVTYNTLIKGYC--KEGNFHQALVMHaeMLRHGLTPSVITYTSLIHSMCK 357
Cdd:PLN03081  94 IEKLVACGRHRE-ALELFEILEAGcpFTLPASTYDALVEACIalKSIRCVKAVYWH--VESSGFEPDQYMMNRVLLMHVK 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  358 AGNMNRAMEFLDQMRVRglcpNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN-----GHCVTGKME 432
Cdd:PLN03081 171 CGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRasaglGSARAGQQL 246

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  433 DAIAVledmkEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKgikpDTITYSSLIQGFCEQRRTKEACDLYEEML 512
Cdd:PLN03081 247 HCCVL-----KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMR 317

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  513 RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV-------------------------------TYSVL 561
Cdd:PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVantalvdlyskwgrmedarnvfdrmprknliSWNAL 397

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  562 INGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSniefksvvslikgfcMKGMMTEADQVFESMlGKNH--KPD 639
Cdd:PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR---------------YSGLSEQGWEIFQSM-SENHriKPR 461

                        410       420
                 ....*....|....*....|....*
gi 15242446  640 GTAYNIMIHGHCRAGDIRKAYTLYK 664
Cdd:PLN03081 462 AMHYACMIELLGREGLLDEAYAMIR 486
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 413-462 6.90e-18

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 77.79  E-value: 6.90e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 518-567 9.61e-18

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 77.40  E-value: 9.61e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   518 PDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 238-287 8.12e-17

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 74.71  E-value: 8.12e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCR 287
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 483-531 6.11e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.11e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15242446   483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYC 531
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 309-357 1.56e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 70.86  E-value: 1.56e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15242446   309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 149-415 1.68e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 81.08  E-value: 1.68e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   149 LIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKrNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLF 228
Cdd:PLN03218  664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK-NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   229 DKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVInGLCREGRMKEVSF---VLTEMNRRG 305
Cdd:PLN03218  743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACALgepVVSFDSGRP 821

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   306 YSLDEVTyntlikgyckegnfHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Cdd:PLN03218  822 QIENKWT--------------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST 887

                         250       260       270
                  ....*....|....*....|....*....|
gi 15242446   386 LVDGFSQkgYMNEAYRVLREMNDNGFSPSV 415
Cdd:PLN03218  888 LVDGFGE--YDPRAFSLLEEAASLGVVPSV 915
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 448-496 2.94e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 70.08  E-value: 2.94e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15242446   448 PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 343-390 4.22e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 67.00  E-value: 4.22e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15242446   343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 273-322 1.49e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.46  E-value: 1.49e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 378-426 2.31e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 64.69  E-value: 2.31e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15242446   378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03077 PLN03077
Protein ECB2; Provisional
 349-687 5.71e-13

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 72.57  E-value: 5.71e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  349 TSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV----------DG-------------------------FSQK 393
Cdd:PLN03077  55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFrlcewkraveEGsrvcsralsshpslgvrlgnamlsmFVRF 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  394 GYMNEAYRVLREMNDNgfspSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS--------------- 458
Cdd:PLN03077 135 GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRtcggipdlargrevh 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  459 ------GFCRSYDVDEAL---RVK-------REMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 522
Cdd:PLN03077 211 ahvvrfGFELDVDVVNALitmYVKcgdvvsaRLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  523 YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKrlllKLFyeesvpsdvtyhtliencSN 602
Cdd:PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE----KVF------------------SR 348

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446  603 IEFKSVVS---LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVI 679
Cdd:PLN03077 349 METKDAVSwtaMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428


                 ....*...
gi 15242446  680 ALVKALHK 687
Cdd:PLN03077 429 ALIEMYSK 436
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 224-391 5.91e-13

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 68.58  E-value: 5.91e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   224 ALTLFDKMETKGCLPNVVTYNTLI---------DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINgLCREGRMKEV 294
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLylcskaadaTDLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVAR-LAAAKGDGDL 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   295 SF-VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Cdd:pfam17177 109 AFdLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRD 188

                         170
                  ....*....|....*...
gi 15242446   374 RGLCPNERTYTTLVDGFS 391
Cdd:pfam17177 189 AVRQVSESTAGVLEEWFR 206
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 234-266 8.57e-12

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 60.05  E-value: 8.57e-12
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15242446   234 KGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 401-460 1.34e-11

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 60.45  E-value: 1.34e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   401 RVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 339-372 6.04e-11

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 57.36  E-value: 6.04e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15242446   339 HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 201-232 1.03e-10

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 56.97  E-value: 1.03e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15242446   201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKME 232
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 406-538 3.05e-10

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 60.49  E-value: 3.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   406 MNDNGFSPSVVTYNALINgHCVTG----------KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKRE 475
Cdd:pfam17177  37 AKAEGVRLAQYHYNVLLY-LCSKAadatdlkpqlAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKE 115

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15242446   476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEK 538
Cdd:pfam17177 116 MEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADK 178
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 167-216 4.95e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.45  E-value: 4.95e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   167 PGVLSYNAVLDATIRSKRnISFAENVFKEMLESQVSPNVFTYNILIRGFC 216
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGK-VEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 434-562 8.50e-10

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 59.33  E-value: 8.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   434 AIAVLEDMKEKGLSPDVVSYSTVLSgFCRSYDV----------DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLY-LCSKAADatdlkpqlaaDRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDL 108

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15242446   504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Cdd:pfam17177 109 AFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALL 167
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 192-250 1.28e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 54.67  E-value: 1.28e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15242446   192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 515-547 2.53e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 52.73  E-value: 2.53e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15242446   515 GLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 610-652 3.40e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.14  E-value: 3.40e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15242446   610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCR 652
Cdd:pfam13041   8 TLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 444-477 3.60e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 52.35  E-value: 3.60e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15242446   444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV 477
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 374-406 3.97e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 52.35  E-value: 3.97e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15242446   374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 322-457 6.11e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 56.64  E-value: 6.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   322 KEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGN---------MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQ 392
Cdd:pfam17177  23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADatdlkpqlaADRGFEVFEAMKAQGVSPNEATYTAVARLAAA 102

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15242446   393 KGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVL 457
Cdd:pfam17177 103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALL 167
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 479-511 7.71e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 51.58  E-value: 7.71e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15242446   479 KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM 511
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 521-555 1.39e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 50.92  E-value: 1.39e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   521 FTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 507-563 1.58e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 51.59  E-value: 1.58e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15242446   507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLIN 563
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 227-283 1.66e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 51.59  E-value: 1.66e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15242446   227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 409-442 1.84e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.42  E-value: 1.84e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15242446   409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK 442
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 437-492 2.14e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 51.20  E-value: 2.14e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15242446   437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 471-530 2.73e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 50.82  E-value: 2.73e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   471 RVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 304-336 2.78e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.04  E-value: 2.78e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15242446   304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 638-687 3.37e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.05  E-value: 3.37e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15242446   638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHK 687
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 416-450 3.63e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 49.76  E-value: 3.63e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   416 VTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 521-551 7.79e-08

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 48.62  E-value: 7.79e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15242446   521 FTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 297-352 1.09e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 49.28  E-value: 1.09e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15242446   297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLI 352
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 311-345 1.36e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 48.22  E-value: 1.36e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSV 345
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 269-301 3.18e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.96  E-value: 3.18e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15242446   269 KGLEPNLISYNVVINGLCREGRMKEVSFVLTEM 301
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 634-667 3.91e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.57  E-value: 3.91e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15242446   634 KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMV 667
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 346-380 4.03e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.68  E-value: 4.03e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE 380
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 147-273 4.72e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 51.24  E-value: 4.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446   147 LSLIDKALSI-VHLAQAHgfmpgvlsYNAVL------DATIRSKRNISFAE--NVFKEMLESQVSPNVFTYNILIRGFCF 217
Cdd:pfam17177  31 LALYDAAKAEgVRLAQYH--------YNVLLylcskaADATDLKPQLAADRgfEVFEAMKAQGVSPNEATYTAVARLAAA 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15242446   218 AGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP 273
Cdd:pfam17177 103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 642-671 4.95e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 4.95e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSGF 671
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 241-274 5.74e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 5.74e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15242446   241 VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPN 274
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 416-446 5.80e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 46.30  E-value: 5.80e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15242446   416 VTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 451-485 5.85e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 5.85e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDT 485
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 368-423 6.93e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.97  E-value: 6.93e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15242446   368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN 423
Cdd:pfam13812   3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 642-671 1.31e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.15  E-value: 1.31e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSGF 671
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 311-341 1.57e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.15  E-value: 1.57e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15242446   311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 335-387 1.63e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 45.81  E-value: 1.63e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15242446   335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV 387
Cdd:pfam13812   5 EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 486-520 2.73e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.37  E-value: 2.73e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   486 ITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 206-240 5.58e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.60  E-value: 5.58e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   206 FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNV 240
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 206-236 5.97e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.22  E-value: 5.97e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15242446   206 FTYNILIRGFCFAGNIDVALTLFDKMETKGC 236
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 241-271 1.86e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.07  E-value: 1.86e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15242446   241 VTYNTLIDGYCKLRKIDDGFKLLRSMALKGL 271
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 346-376 3.13e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.30  E-value: 3.13e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15242446   346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 549-578 4.33e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.79  E-value: 4.33e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   549 KGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELL 30
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 155-212 7.13e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 41.19  E-value: 7.13e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15242446   155 SIVHLAQAHGFMPGVLSYNAVLDATIRSKrNISFAENVFKEMLESQVSPNVFTYNILI 212
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVG-NLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 381-415 1.22e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.75  E-value: 1.22e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   381 RTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 451-481 1.38e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 1.38e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15242446   451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 486-516 1.98e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.99  E-value: 1.98e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15242446   486 ITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 429-703 3.02e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 3.02e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446 429 GKMEDAIAVLEDMKEkgLSPDVVS-YSTVLSGFCRSYDVDEALRVKREMVEkgIKPDTIT-YSSLIQGFCEQRRTKEACD 506
Cdd:COG2956  22 GQPDKAIDLLEEALE--LDPETVEaHLALGNLYRRRGEYDRAIRIHQKLLE--RDPDRAEaLLELAQDYLKAGLLDRAEE 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446 507 LYEEMLRVGlPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGvLPDVVTYSVLINGLNKQSRTREAKRLLLKLFyeES 586
Cdd:COG2956  98 LLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKAL--KL 173

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242446 587 VPSDVTYHTLIencSNIEFKsvvslikgfcmKGMMTEADQVFESMLGKNHKpDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666
Cdd:COG2956 174 DPDCARALLLL---AELYLE-----------QGDYEEAIAALERALEQDPD-YLPALPRLAELYEKLGDPEEALELLRKA 238

                       250       260       270
                ....*....|....*....|....*....|....*..
gi 15242446 667 VKSGFLLHtvTVIALVKALHKEGKVNELNSVIVHVLR 703
Cdd:COG2956 239 LELDPSDD--LLLALADLLERKEGLEAALALLERQLR 273
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 610-639 3.03e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.03e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   610 SLIKGFCMKGMMTEADQVFESMLGKNHKPD 639
Cdd:TIGR00756   5 TLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 382-411 3.08e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.60  E-value: 3.08e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   382 TYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 261-323 3.90e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.26  E-value: 3.90e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15242446   261 KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKE 323
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 276-305 6.19e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.44  E-value: 6.19e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15242446   276 ISYNVVINGLCREGRMKEVSFVLTEMNRRG 305
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 276-310 1.06e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.05  E-value: 1.06e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15242446   276 ISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH