Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]
F-box/kelch-repeat protein( domain architecture ID 17778853)
F-box/kelch-repeat protein may be a component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
F-box_AtAFR-like | cd22152 | F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
9-51 | 9.95e-18 | ||||
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. : Pssm-ID: 438923 Cd Length: 45 Bit Score: 74.91 E-value: 9.95e-18
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NanM super family | cl34543 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
68-254 | 6.86e-08 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; The actual alignment was detected with superfamily member COG3055: Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 52.47 E-value: 6.86e-08
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Name | Accession | Description | Interval | E-value | ||||
F-box_AtAFR-like | cd22152 | F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
9-51 | 9.95e-18 | ||||
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438923 Cd Length: 45 Bit Score: 74.91 E-value: 9.95e-18
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NanM | COG3055 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
68-254 | 6.86e-08 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 52.47 E-value: 6.86e-08
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F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
10-50 | 6.36e-07 | ||||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 45.22 E-value: 6.36e-07
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FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
11-51 | 5.78e-05 | ||||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 39.73 E-value: 5.78e-05
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Kelch_2 | pfam07646 | Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
81-123 | 9.84e-05 | ||||
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Pssm-ID: 462220 [Multi-domain] Cd Length: 47 Bit Score: 39.24 E-value: 9.84e-05
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Name | Accession | Description | Interval | E-value | ||||
F-box_AtAFR-like | cd22152 | F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
9-51 | 9.95e-18 | ||||
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438923 Cd Length: 45 Bit Score: 74.91 E-value: 9.95e-18
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NanM | COG3055 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
68-254 | 6.86e-08 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 52.47 E-value: 6.86e-08
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F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
10-50 | 6.36e-07 | ||||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 45.22 E-value: 6.36e-07
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NanM | COG3055 | N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
70-165 | 1.07e-05 | ||||
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 45.92 E-value: 1.07e-05
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F-box_ScMDM30-like | cd22143 | F-box domain found in Saccharomyces cerevisiae mitochondrial distribution and morphology ... |
10-51 | 2.99e-05 | ||||
F-box domain found in Saccharomyces cerevisiae mitochondrial distribution and morphology protein 30 (ScMDM30) and similar proteins; ScMDM30 is an F-box protein required for maintenance of fusion-competent mitochondria in yeast. It is the substrate-recognition component of an SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. ScMDM30 recognizes FZO1 and regulates the amount of FZO1. It acts as a regulatory factor for the mitochondrial fusion machinery and is required for mitochondrial DNA maintenance. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438915 Cd Length: 44 Bit Score: 40.67 E-value: 2.99e-05
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FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
11-51 | 5.78e-05 | ||||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 39.73 E-value: 5.78e-05
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Kelch_2 | pfam07646 | Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
81-123 | 9.84e-05 | ||||
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Pssm-ID: 462220 [Multi-domain] Cd Length: 47 Bit Score: 39.24 E-value: 9.84e-05
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Blast search parameters | ||||
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