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Conserved domains on  [gi|15240931|ref|NP_198666|]
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B3 domain protein (DUF313) [Arabidopsis thaliana]

Protein Classification

B3 domain-containing protein( domain architecture ID 10510068)

B3 domain-containing protein is a DUF313 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
At2g31720-like pfam03754
B3 domain-containing protein At2g31720-like; This entry represents a group of uncharacterized ...
244-384 7.42e-44

B3 domain-containing protein At2g31720-like; This entry represents a group of uncharacterized plant proteins, including B3 domain-containing protein At2g31720 (also known as Protein AUXIN RESPONSE FACTOR 70) from Arabidopsis. These are DNA-binding proteins likely to be involved in stress response.


:

Pssm-ID: 281714  Cd Length: 113  Bit Score: 148.66  E-value: 7.42e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240931   244 TETPEWVFQAMGHMNAdAETPKLIFERTLFKSDVNSNLSRLLIPFQKLIRNDFLTPEECRAMQedkdkDDEDISVGTilv 323
Cdd:pfam03754   1 RETPEWLLKVMRKMNG-AEDPKLIIEKTLFKTDVDPTQSRLSMPFNQLIRNDFLTEEELRIIR-----EEDKIKDRD--- 71
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15240931   324 cqakqededkddedIGAGTILVNQRFKMWGLRFKIWGMekdsgHGTLNYILNWDWNDVVKG 384
Cdd:pfam03754  72 --------------IGVGVILVDQESKKWVLKLKKWDM-----KGTWNYVLVCGWNDVVTA 113
 
Name Accession Description Interval E-value
At2g31720-like pfam03754
B3 domain-containing protein At2g31720-like; This entry represents a group of uncharacterized ...
244-384 7.42e-44

B3 domain-containing protein At2g31720-like; This entry represents a group of uncharacterized plant proteins, including B3 domain-containing protein At2g31720 (also known as Protein AUXIN RESPONSE FACTOR 70) from Arabidopsis. These are DNA-binding proteins likely to be involved in stress response.


Pssm-ID: 281714  Cd Length: 113  Bit Score: 148.66  E-value: 7.42e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240931   244 TETPEWVFQAMGHMNAdAETPKLIFERTLFKSDVNSNLSRLLIPFQKLIRNDFLTPEECRAMQedkdkDDEDISVGTilv 323
Cdd:pfam03754   1 RETPEWLLKVMRKMNG-AEDPKLIIEKTLFKTDVDPTQSRLSMPFNQLIRNDFLTEEELRIIR-----EEDKIKDRD--- 71
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15240931   324 cqakqededkddedIGAGTILVNQRFKMWGLRFKIWGMekdsgHGTLNYILNWDWNDVVKG 384
Cdd:pfam03754  72 --------------IGVGVILVDQESKKWVLKLKKWDM-----KGTWNYVLVCGWNDVVTA 113
 
Name Accession Description Interval E-value
At2g31720-like pfam03754
B3 domain-containing protein At2g31720-like; This entry represents a group of uncharacterized ...
244-384 7.42e-44

B3 domain-containing protein At2g31720-like; This entry represents a group of uncharacterized plant proteins, including B3 domain-containing protein At2g31720 (also known as Protein AUXIN RESPONSE FACTOR 70) from Arabidopsis. These are DNA-binding proteins likely to be involved in stress response.


Pssm-ID: 281714  Cd Length: 113  Bit Score: 148.66  E-value: 7.42e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240931   244 TETPEWVFQAMGHMNAdAETPKLIFERTLFKSDVNSNLSRLLIPFQKLIRNDFLTPEECRAMQedkdkDDEDISVGTilv 323
Cdd:pfam03754   1 RETPEWLLKVMRKMNG-AEDPKLIIEKTLFKTDVDPTQSRLSMPFNQLIRNDFLTEEELRIIR-----EEDKIKDRD--- 71
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15240931   324 cqakqededkddedIGAGTILVNQRFKMWGLRFKIWGMekdsgHGTLNYILNWDWNDVVKG 384
Cdd:pfam03754  72 --------------IGVGVILVDQESKKWVLKLKKWDM-----KGTWNYVLVCGWNDVVTA 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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