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Conserved domains on  [gi|30692917|ref|NP_198466|]
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high chlorophyll fluorescent 109 [Arabidopsis thaliana]

Protein Classification

PCRF domain-containing protein( domain architecture ID 1750053)

peptide chain release factor (PCRF) domain-containing protein similar to Homo sapiens mitochondrial peptide chain release factor 1 (MTRF1), MTRF1-like and 28S mitochondrial ribosomal protein S35 (MRPS35)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PCRF super family cl40670
This domain is found in peptide chain release factors;
80-357 3.61e-98

This domain is found in peptide chain release factors;


The actual alignment was detected with superfamily member TIGR00020:

Pssm-ID: 477417 [Multi-domain]  Cd Length: 364  Bit Score: 296.69  E-value: 3.61e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917    80 DFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAET 159
Cdd:TIGR00020   1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   160 IVKLTEEMDSTDVSLLEEAMgiIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 239
Cdd:TIGR00020  81 LLELAVEEDDEETFNELDAE--LKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   240 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEaVGIEIPEEDL 319
Cdd:TIGR00020 159 FKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDD-IDIEIKPEDL 237

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 30692917   320 DISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC-TDR 357
Cdd:TIGR00020 238 RIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCqNDR 276
 
Name Accession Description Interval E-value
prfB TIGR00020
peptide chain release factor 2; In many but not all taxa, there is a conserved real ...
 80-357 3.61e-98

peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]


Pssm-ID: 272858 [Multi-domain]  Cd Length: 364  Bit Score: 296.69  E-value: 3.61e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917    80 DFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAET 159
Cdd:TIGR00020   1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   160 IVKLTEEMDSTDVSLLEEAMgiIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 239
Cdd:TIGR00020  81 LLELAVEEDDEETFNELDAE--LKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   240 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEaVGIEIPEEDL 319
Cdd:TIGR00020 159 FKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDD-IDIEIKPEDL 237

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 30692917   320 DISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC-TDR 357
Cdd:TIGR00020 238 RIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCqNDR 276
PRK05589 PRK05589
peptide chain release factor 2; Provisional
 123-354 3.13e-84

peptide chain release factor 2; Provisional


Pssm-ID: 235520 [Multi-domain]  Cd Length: 325  Bit Score: 259.74  E-value: 3.13e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  123 FWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDStdvSLLEEAMGIIKELNKSLDKFELTQLLSGPY 202
Cdd:PRK05589   6 FWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSEEDD---EMKKEIISEVKNIKEEIDRFKIETLLSGEY 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  203 DKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVR 282
Cdd:PRK05589  83 DRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVR 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30692917  283 QSPFNSKGLRQTSFSGVEVMPLLPEEAvGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC 354
Cdd:PRK05589 163 ISPFNANGKRQTSFASVEVLPELTDDQ-DIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQC 233
PCRF pfam03462
PCRF domain; This domain is found in peptide chain release factors.
 107-299 4.13e-64

PCRF domain; This domain is found in peptide chain release factors.


Pssm-ID: 460929 [Multi-domain]  Cd Length: 192  Bit Score: 203.00  E-value: 4.13e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   107 LEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDstdvsLLEEAMGIIKELN 186
Cdd:pfam03462   1 LEERYEELEALLSDPDVWDDQKRAQKLSKEYSELEPIVEAYREYKQALEDLEEAKELLEDPE-----LAELAEEELEELE 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   187 KSLDKF--ELTQLLS--GPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEI 262
Cdd:pfam03462  76 KRLEELeeELKLLLLpkDPNDDKNAILEIRAGAGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEATFEI 155

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 30692917   263 EGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 299
Cdd:pfam03462 156 SGEGAYGRLKFESGVHRVQRVPPTESQGRIHTSFATV 192
PrfA COG0216
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ...
 104-366 1.50e-44

Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 439986 [Multi-domain]  Cd Length: 356  Bit Score: 157.47  E-value: 1.50e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917 104 LQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETivklTEEM--DSTDVSLLEEAMGI 181
Cdd:COG0216   6 LEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKKLLEDIEE----AKELleEESDPEMREMAKEE 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917 182 IKELNKSLDKFE--LTQLL--SGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKS 257
Cdd:COG0216  82 LEELEARLEELEeeLKILLlpKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERKGWKVEILSASEGELGGYKE 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917 258 ATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPllpE-EAVGIEIPEEDLDISFTRAGGKGGQNVNK 336
Cdd:COG0216 162 VIFRISGEGVYSRLKFESGVHRVQRVPETESQGRIHTSAATVAVLP---EaEEVDVEINPKDLRIDTFRSSGAGGQHVNT 238

                       250       260       270
                ....*....|....*....|....*....|
gi 30692917 337 VETAVRITHIPTGVAVRCTDrvgccrgEKS 366
Cdd:COG0216 239 TDSAVRITHLPTGIVVECQD-------ERS 261
PCRF smart00937
This domain is found in peptide chain release factors;
162-274 4.02e-39

This domain is found in peptide chain release factors;


Pssm-ID: 214923 [Multi-domain]  Cd Length: 116  Bit Score: 135.67  E-value: 4.02e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917    162 KLTEEMDstDVSLLEEAMGIIKELN----KSLDKFELTQLLSG-PYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGE 236
Cdd:smart00937   1 ELLEEEE--DDEMRELAEEELEELEaeleEELEELLKLLLLPKdPNDDKNAILEIRAGAGGDEAALFAGDLLRMYLRYAE 78

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 30692917    237 KQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGE 274
Cdd:smart00937  79 RKGWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
 
Name Accession Description Interval E-value
prfB TIGR00020
peptide chain release factor 2; In many but not all taxa, there is a conserved real ...
 80-357 3.61e-98

peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]


Pssm-ID: 272858 [Multi-domain]  Cd Length: 364  Bit Score: 296.69  E-value: 3.61e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917    80 DFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAET 159
Cdd:TIGR00020   1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   160 IVKLTEEMDSTDVSLLEEAMgiIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 239
Cdd:TIGR00020  81 LLELAVEEDDEETFNELDAE--LKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   240 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEaVGIEIPEEDL 319
Cdd:TIGR00020 159 FKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDD-IDIEIKPEDL 237

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 30692917   320 DISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC-TDR 357
Cdd:TIGR00020 238 RIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCqNDR 276
PRK05589 PRK05589
peptide chain release factor 2; Provisional
 123-354 3.13e-84

peptide chain release factor 2; Provisional


Pssm-ID: 235520 [Multi-domain]  Cd Length: 325  Bit Score: 259.74  E-value: 3.13e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  123 FWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDStdvSLLEEAMGIIKELNKSLDKFELTQLLSGPY 202
Cdd:PRK05589   6 FWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSEEDD---EMKKEIISEVKNIKEEIDRFKIETLLSGEY 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  203 DKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVR 282
Cdd:PRK05589  83 DRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVR 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30692917  283 QSPFNSKGLRQTSFSGVEVMPLLPEEAvGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC 354
Cdd:PRK05589 163 ISPFNANGKRQTSFASVEVLPELTDDQ-DIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQC 233
PRK07342 PRK07342
peptide chain release factor 2; Provisional
 117-354 1.40e-72

peptide chain release factor 2; Provisional


Pssm-ID: 235997 [Multi-domain]  Cd Length: 339  Bit Score: 230.15  E-value: 1.40e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  117 KATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEmdSTDVSLLEEAMGIIKELNKSLDKFELTQ 196
Cdd:PRK07342   2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEE--EGDKSIVEDAEKTIRDLKDEIDRRQIDA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  197 LLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKG 276
Cdd:PRK07342  80 LLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESG 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30692917  277 THRIVRQSPFNSKGLRQTSFSGVEVMPLLpEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC 354
Cdd:PRK07342 160 VHRLVRISPYDSNARRHTSFASIWVYPVI-DDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQC 236
PCRF pfam03462
PCRF domain; This domain is found in peptide chain release factors.
 107-299 4.13e-64

PCRF domain; This domain is found in peptide chain release factors.


Pssm-ID: 460929 [Multi-domain]  Cd Length: 192  Bit Score: 203.00  E-value: 4.13e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   107 LEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDstdvsLLEEAMGIIKELN 186
Cdd:pfam03462   1 LEERYEELEALLSDPDVWDDQKRAQKLSKEYSELEPIVEAYREYKQALEDLEEAKELLEDPE-----LAELAEEELEELE 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917   187 KSLDKF--ELTQLLS--GPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEI 262
Cdd:pfam03462  76 KRLEELeeELKLLLLpkDPNDDKNAILEIRAGAGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEATFEI 155

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 30692917   263 EGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 299
Cdd:pfam03462 156 SGEGAYGRLKFESGVHRVQRVPPTESQGRIHTSFATV 192
PRK08787 PRK08787
peptide chain release factor 2; Provisional
 151-354 2.68e-63

peptide chain release factor 2; Provisional


Pssm-ID: 136970 [Multi-domain]  Cd Length: 313  Bit Score: 205.28  E-value: 2.68e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  151 KTMVEDAETIVKLTEEMDSTDVSLLEE----AMGIIKELNK---SLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDW 223
Cdd:PRK08787   4 KTVIGIADVLSGLADAGELLDLAESEQdedtALAVIADLDKyqaHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEAQDW 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  224 ADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMP 303
Cdd:PRK08787  84 AEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSP 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 30692917  304 LLpEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC 354
Cdd:PRK08787 164 EV-DDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVAC 213
PRK06746 PRK06746
peptide chain release factor 2; Provisional
 123-354 7.56e-63

peptide chain release factor 2; Provisional


Pssm-ID: 75726 [Multi-domain]  Cd Length: 326  Bit Score: 204.58  E-value: 7.56e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  123 FWDDRTKAQETLSSLNDLKDrmrLLSEFKTMVEDAETIvKLTEEM--DSTDVSLLEEAMGIIKELNKSLDKFELTQLLSG 200
Cdd:PRK06746   6 FWDDQQGAQAVINEANALKD---MVGKFRQLDETFENL-EITHELlkEEYDEDLHEELESEVKGLIQEMNEYELQLLLSD 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  201 PYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRI 280
Cdd:PRK06746  82 PYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30692917  281 VRQSPFNSKGLRQTSFSGVEVMPLLPEEaVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC 354
Cdd:PRK06746 162 VRISPFDSSGRRHTSFVSCEVVPEFNDE-VEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTC 234
prfA PRK00591
peptide chain release factor 1; Validated
 102-366 7.16e-49

peptide chain release factor 1; Validated


Pssm-ID: 234801 [Multi-domain]  Cd Length: 359  Bit Score: 169.10  E-value: 7.16e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  102 ANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETivklTEEM--DSTDVSLLEEAM 179
Cdd:PRK00591   6 DKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEE----AKEMleEESDPEMREMAK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  180 GIIKELNKSLDKFE--LTQLL--SGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGI 255
Cdd:PRK00591  82 EELKELEERLEELEeeLKILLlpKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917  256 KSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEeaVGIEIPEEDLDISFTRAGGKGGQNVN 335
Cdd:PRK00591 162 KEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE--VEVEINPKDLRIDTFRSSGAGGQHVN 239

                        250       260       270
                 ....*....|....*....|....*....|.
gi 30692917  336 KVETAVRITHIPTGVAVRCTDrvgccrgEKS 366
Cdd:PRK00591 240 TTDSAVRITHLPTGIVVECQD-------ERS 263
PrfA COG0216
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ...
 104-366 1.50e-44

Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 439986 [Multi-domain]  Cd Length: 356  Bit Score: 157.47  E-value: 1.50e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917 104 LQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETivklTEEM--DSTDVSLLEEAMGI 181
Cdd:COG0216   6 LEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKKLLEDIEE----AKELleEESDPEMREMAKEE 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917 182 IKELNKSLDKFE--LTQLL--SGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKS 257
Cdd:COG0216  82 LEELEARLEELEeeLKILLlpKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERKGWKVEILSASEGELGGYKE 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917 258 ATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPllpE-EAVGIEIPEEDLDISFTRAGGKGGQNVNK 336
Cdd:COG0216 162 VIFRISGEGVYSRLKFESGVHRVQRVPETESQGRIHTSAATVAVLP---EaEEVDVEINPKDLRIDTFRSSGAGGQHVNT 238

                       250       260       270
                ....*....|....*....|....*....|
gi 30692917 337 VETAVRITHIPTGVAVRCTDrvgccrgEKS 366
Cdd:COG0216 239 TDSAVRITHLPTGIVVECQD-------ERS 261
PCRF smart00937
This domain is found in peptide chain release factors;
162-274 4.02e-39

This domain is found in peptide chain release factors;


Pssm-ID: 214923 [Multi-domain]  Cd Length: 116  Bit Score: 135.67  E-value: 4.02e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30692917    162 KLTEEMDstDVSLLEEAMGIIKELN----KSLDKFELTQLLSG-PYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGE 236
Cdd:smart00937   1 ELLEEEE--DDEMRELAEEELEELEaeleEELEELLKLLLLPKdPNDDKNAILEIRAGAGGDEAALFAGDLLRMYLRYAE 78

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 30692917    237 KQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGE 274
Cdd:smart00937  79 RKGWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
RF-1 pfam00472
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and ...
 308-356 6.14e-23

RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.


Pssm-ID: 459823 [Multi-domain]  Cd Length: 111  Bit Score: 92.49  E-value: 6.14e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 30692917   308 EAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTD 356
Cdd:pfam00472   1 DEIEIEIDPKDLRIDTFRSSGAGGQHVNKTDSAVRLTHIPTGIVVKCQD 49
PrfB COG1186
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein ...
 312-354 5.84e-17

Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein chain release factor PrfB is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 440799 [Multi-domain]  Cd Length: 140  Bit Score: 76.71  E-value: 5.84e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 30692917 312 IEIPEEDLDISFTRAGGKGGQNVNKVETAVRITH------------IPTGVAVRC 354
Cdd:COG1186  21 IEIPESDLRIDTYRASGAGGQNVNKVSSAVRLTHdiassslpdsrlTPGGIVVKA 75
PRK09256 PRK09256
aminoacyl-tRNA hydrolase;
312-341 1.11e-09

aminoacyl-tRNA hydrolase;


Pssm-ID: 181730 [Multi-domain]  Cd Length: 138  Bit Score: 56.31  E-value: 1.11e-09
                         10        20        30
                 ....*....|....*....|....*....|
gi 30692917  312 IEIPEEDLDISFTRAGGKGGQNVNKVETAV 341
Cdd:PRK09256   8 LVIPENELEWRFIRASGPGGQNVNKVSTAV 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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