AGAMOUS-like 101 [Arabidopsis thaliana]
MADS-box domain-containing protein( domain architecture ID 10083688)
MADS (MCM1, AGAMOUS, DEFICIENS, and SRF, serum response factor)-box domain-containing protein functions as a transcription factor and may be involved in various important aspects of development and differentiation
List of domain hits
Name | Accession | Description | Interval | E-value | ||
MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
1-59 | 5.67e-16 | ||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. : Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 67.29 E-value: 5.67e-16
|
||||||
Name | Accession | Description | Interval | E-value | ||
MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
1-59 | 5.67e-16 | ||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 67.29 E-value: 5.67e-16
|
||||||
MADS | smart00432 | MADS domain; |
1-32 | 7.97e-09 | ||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 48.32 E-value: 7.97e-09
|
||||||
SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
1-28 | 2.36e-08 | ||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 46.65 E-value: 2.36e-08
|
||||||
Name | Accession | Description | Interval | E-value | ||
MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
1-59 | 5.67e-16 | ||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 67.29 E-value: 5.67e-16
|
||||||
MADS | cd00120 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
1-33 | 6.21e-11 | ||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238067 [Multi-domain] Cd Length: 59 Bit Score: 53.67 E-value: 6.21e-11
|
||||||
MADS | smart00432 | MADS domain; |
1-32 | 7.97e-09 | ||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 48.32 E-value: 7.97e-09
|
||||||
SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
1-28 | 2.36e-08 | ||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 46.65 E-value: 2.36e-08
|
||||||
MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-50 | 9.75e-03 | ||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 32.52 E-value: 9.75e-03
|
||||||
Blast search parameters | ||||
|