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Conserved domains on  [gi|15238768|ref|NP_197323|]
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O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

Protein Classification

glycoside hydrolase family 17 protein( domain architecture ID 11042916)

glycoside hydrolase family 17 protein with a C-terminal X8 family carbohydrate-binding domain, such as glucan endo-1,3-beta-glucosidase, which breaks (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyco_hydro super family cl23725
Glycosyl hydrolases; A functionally diverse superfamily containing glycosyl hydrolase families ...
30-346 1.13e-72

Glycosyl hydrolases; A functionally diverse superfamily containing glycosyl hydrolase families 1,5,10,17,44,72, and others.


The actual alignment was detected with superfamily member pfam00332:

Pssm-ID: 474034  Cd Length: 309  Bit Score: 232.39  E-value: 1.13e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768    30 LGVNWGTMSTHQLPPKTVVQMLKDNNVKKVKLFDADTNTMVALAGSGIEVMVAIPNDQLKAMGSYN-RAKDWVRRNITRF 108
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQsQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768   109 NDDVKIKYVAVGNEPFLTAYNGSFINLTyPALFNIQKALNEAGVGDFIKATVPLNADVYNSpleNPVPSAGSFRQDIFEE 188
Cdd:pfam00332  81 APKVKFKYIAVGNEISPGTSAGKYRFLV-PAMANIYNALTAAGLSNKIKVSTSLVMGLLDN---SYPPSYSTFREETKPF 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768   189 MKLIVNFLAHNKAPFTVNIYPFLSlYLSSDFPFDYAFFNGQNTVsdNGVIYTNVFDANFDTLLASLKALGHGDMTVIVGE 268
Cdd:pfam00332 157 VDPINGFLAGTNSPLLVNIYPYFV-YSNNNVSLDYALFQGQSQV--NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWVSE 233
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238768   269 VGWPTDGDKNANIPNAERFYTGLLPKlaANRGTPMRPGY-IEVYLFGFIDEDAKSiaPGNFERHWGIFKYDGQPKFPAD 346
Cdd:pfam00332 234 TGWPSDGHPGATLENAATYVRNLIQH--VKEGTPSKPGWgIETYVFAMFDENWKP--GTSVEKHWGVFQPDKSPKYSLD 308
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
368-455 5.37e-31

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


:

Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 114.66  E-value: 5.37e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768    368 QWCMFNPNAltfsnNTNQLGDNVNYACTFS-DCTALGYGSSCGNLDEV-GNASYAFNMYFQVQNQKAEACDFEGLAIITT 445
Cdd:smart00768   1 LWCVAKPDA-----DEAALQAALDYACGQGaDCTAIQPGGSCYSPNTVkAHASYAFNSYYQKQGQSSGACDFSGTATITT 75
                           90
                   ....*....|
gi 15238768    446 RNISREQCNF 455
Cdd:smart00768  76 TDPSTGSCKF 85
 
Name Accession Description Interval E-value
Glyco_hydro_17 pfam00332
Glycosyl hydrolases family 17;
30-346 1.13e-72

Glycosyl hydrolases family 17;


Pssm-ID: 366033  Cd Length: 309  Bit Score: 232.39  E-value: 1.13e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768    30 LGVNWGTMSTHQLPPKTVVQMLKDNNVKKVKLFDADTNTMVALAGSGIEVMVAIPNDQLKAMGSYN-RAKDWVRRNITRF 108
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQsQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768   109 NDDVKIKYVAVGNEPFLTAYNGSFINLTyPALFNIQKALNEAGVGDFIKATVPLNADVYNSpleNPVPSAGSFRQDIFEE 188
Cdd:pfam00332  81 APKVKFKYIAVGNEISPGTSAGKYRFLV-PAMANIYNALTAAGLSNKIKVSTSLVMGLLDN---SYPPSYSTFREETKPF 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768   189 MKLIVNFLAHNKAPFTVNIYPFLSlYLSSDFPFDYAFFNGQNTVsdNGVIYTNVFDANFDTLLASLKALGHGDMTVIVGE 268
Cdd:pfam00332 157 VDPINGFLAGTNSPLLVNIYPYFV-YSNNNVSLDYALFQGQSQV--NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWVSE 233
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238768   269 VGWPTDGDKNANIPNAERFYTGLLPKlaANRGTPMRPGY-IEVYLFGFIDEDAKSiaPGNFERHWGIFKYDGQPKFPAD 346
Cdd:pfam00332 234 TGWPSDGHPGATLENAATYVRNLIQH--VKEGTPSKPGWgIETYVFAMFDENWKP--GTSVEKHWGVFQPDKSPKYSLD 308
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
368-455 5.37e-31

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 114.66  E-value: 5.37e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768    368 QWCMFNPNAltfsnNTNQLGDNVNYACTFS-DCTALGYGSSCGNLDEV-GNASYAFNMYFQVQNQKAEACDFEGLAIITT 445
Cdd:smart00768   1 LWCVAKPDA-----DEAALQAALDYACGQGaDCTAIQPGGSCYSPNTVkAHASYAFNSYYQKQGQSSGACDFSGTATITT 75
                           90
                   ....*....|
gi 15238768    446 RNISREQCNF 455
Cdd:smart00768  76 TDPSTGSCKF 85
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
368-442 2.13e-21

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 88.04  E-value: 2.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768   368 QWCMFNPNAltfsnNTNQLGDNVNYACTFSDCTALGYGSSCGNL------DEVGNASYAFNMYFQVQNQKAEACDFEGLA 441
Cdd:pfam07983   1 LWCVAKDSV-----DDEDLQDLFDYACGQADCSGIQANGTTGKYgcyspcTVKQHLSYAFNSYYQKQGKASSACDFSGSA 75

                  .
gi 15238768   442 I 442
Cdd:pfam07983  76 T 76
Scw11 COG5309
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];
107-344 8.07e-13

Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];


Pssm-ID: 444107  Cd Length: 512  Bit Score: 70.44  E-value: 8.07e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768 107 RFNDDVKIkyVAVGNEpfltayngsfinltypALFNiqKALNEAGVGDFI---KATVPL---NADVYNSPLENPvpsags 180
Cdd:COG5309 126 EYPDIVKR--VIVGNE----------------VLLR--GDLTPEELIAYIrrvKAAVKVpvtYADVWHFWLKHP------ 179
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768 181 frqdifeemKLI--VNFLahnkapfTVNIYPFLSlylssDFPFDYAffngqntvsdngVIYTnvfDANFDTLLASlkalg 258
Cdd:COG5309 180 ---------ELAdaVDFI-------TIHILPYWE-----GVPIERA------------LDYA---KDRYDEVRAA----- 218
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768 259 HGDMTVIVGEVGWPTDGD----KNANIPNAERFYTGLLPKLAANRgtpmrpgyIEVYLFGFIDEDAKSIAPGNFERHWGI 334
Cdd:COG5309 219 FPGKPIIIGETGWPSAGRqrggAVPSEVNQARYLREFLAWANEEG--------IDYFYFEAFDQPWKRALEGTVGAYWGL 290
                       250
                ....*....|
gi 15238768 335 FKYDGQPKFP 344
Cdd:COG5309 291 FDADRQPKFP 300
 
Name Accession Description Interval E-value
Glyco_hydro_17 pfam00332
Glycosyl hydrolases family 17;
30-346 1.13e-72

Glycosyl hydrolases family 17;


Pssm-ID: 366033  Cd Length: 309  Bit Score: 232.39  E-value: 1.13e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768    30 LGVNWGTMSTHQLPPKTVVQMLKDNNVKKVKLFDADTNTMVALAGSGIEVMVAIPNDQLKAMGSYN-RAKDWVRRNITRF 108
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQsQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768   109 NDDVKIKYVAVGNEPFLTAYNGSFINLTyPALFNIQKALNEAGVGDFIKATVPLNADVYNSpleNPVPSAGSFRQDIFEE 188
Cdd:pfam00332  81 APKVKFKYIAVGNEISPGTSAGKYRFLV-PAMANIYNALTAAGLSNKIKVSTSLVMGLLDN---SYPPSYSTFREETKPF 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768   189 MKLIVNFLAHNKAPFTVNIYPFLSlYLSSDFPFDYAFFNGQNTVsdNGVIYTNVFDANFDTLLASLKALGHGDMTVIVGE 268
Cdd:pfam00332 157 VDPINGFLAGTNSPLLVNIYPYFV-YSNNNVSLDYALFQGQSQV--NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWVSE 233
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238768   269 VGWPTDGDKNANIPNAERFYTGLLPKlaANRGTPMRPGY-IEVYLFGFIDEDAKSiaPGNFERHWGIFKYDGQPKFPAD 346
Cdd:pfam00332 234 TGWPSDGHPGATLENAATYVRNLIQH--VKEGTPSKPGWgIETYVFAMFDENWKP--GTSVEKHWGVFQPDKSPKYSLD 308
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
368-455 5.37e-31

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 114.66  E-value: 5.37e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768    368 QWCMFNPNAltfsnNTNQLGDNVNYACTFS-DCTALGYGSSCGNLDEV-GNASYAFNMYFQVQNQKAEACDFEGLAIITT 445
Cdd:smart00768   1 LWCVAKPDA-----DEAALQAALDYACGQGaDCTAIQPGGSCYSPNTVkAHASYAFNSYYQKQGQSSGACDFSGTATITT 75
                           90
                   ....*....|
gi 15238768    446 RNISREQCNF 455
Cdd:smart00768  76 TDPSTGSCKF 85
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
368-442 2.13e-21

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 88.04  E-value: 2.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768   368 QWCMFNPNAltfsnNTNQLGDNVNYACTFSDCTALGYGSSCGNL------DEVGNASYAFNMYFQVQNQKAEACDFEGLA 441
Cdd:pfam07983   1 LWCVAKDSV-----DDEDLQDLFDYACGQADCSGIQANGTTGKYgcyspcTVKQHLSYAFNSYYQKQGKASSACDFSGSA 75

                  .
gi 15238768   442 I 442
Cdd:pfam07983  76 T 76
Scw11 COG5309
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];
107-344 8.07e-13

Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];


Pssm-ID: 444107  Cd Length: 512  Bit Score: 70.44  E-value: 8.07e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768 107 RFNDDVKIkyVAVGNEpfltayngsfinltypALFNiqKALNEAGVGDFI---KATVPL---NADVYNSPLENPvpsags 180
Cdd:COG5309 126 EYPDIVKR--VIVGNE----------------VLLR--GDLTPEELIAYIrrvKAAVKVpvtYADVWHFWLKHP------ 179
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768 181 frqdifeemKLI--VNFLahnkapfTVNIYPFLSlylssDFPFDYAffngqntvsdngVIYTnvfDANFDTLLASlkalg 258
Cdd:COG5309 180 ---------ELAdaVDFI-------TIHILPYWE-----GVPIERA------------LDYA---KDRYDEVRAA----- 218
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238768 259 HGDMTVIVGEVGWPTDGD----KNANIPNAERFYTGLLPKLAANRgtpmrpgyIEVYLFGFIDEDAKSIAPGNFERHWGI 334
Cdd:COG5309 219 FPGKPIIIGETGWPSAGRqrggAVPSEVNQARYLREFLAWANEEG--------IDYFYFEAFDQPWKRALEGTVGAYWGL 290
                       250
                ....*....|
gi 15238768 335 FKYDGQPKFP 344
Cdd:COG5309 291 FDADRQPKFP 300
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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