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Conserved domains on  [gi|15238668|ref|NP_197290|]
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disease resistance protein (TIR-NBS-LRR class) [Arabidopsis thaliana]

Protein Classification

disease resistance family protein( domain architecture ID 1000118)

disease resistance family protein similar to Nicotiana glutinosa TMV resistance protein N; resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein

Gene Ontology:  GO:0006952

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PLN03210 super family cl33662
Resistant to P. syringae 6; Provisional
1-982 3.37e-110

Resistant to P. syringae 6; Provisional


The actual alignment was detected with superfamily member PLN03210:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 372.67  E-value: 3.37e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668     1 MTSSSS----WVKtdgetpqdQVFINFRGVELRKNFVSHLEKGLKRKGINAFIDTDEEMGQELS-VLLERIEGSRIALAI 75
Cdd:PLN03210    1 MASSSSssrnWVY--------DVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDpELKQAIRDSRIAVVV 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    76 FSPRYTESKWCLKELAKMKERTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELVKSTDKKTKKEWKEALQYVPFLTGI 155
Cdd:PLN03210   73 FSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGY 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   156 VLDEKSDEDEVINIIIRKVKEILNrrsegppskcsaLPPQRHqkrHETFWGIELRIKQLEEKLRFGSDETtRTIGVVGMP 235
Cdd:PLN03210  153 HSQNWPNEAKMIEEIANDVLGKLN------------LTPSND---FEDFVGIEDHIAKMSSLLHLESEEV-RMVGIWGSS 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   236 GIGKTTLATMLYEKWNDRFLRHVLI--------RDIHEASEEDGLN---YLATKFLQGLLKVENANIESVQAAHEAYKDQ 304
Cdd:PLN03210  217 GIGKTTIARALFSRLSRQFQSSVFIdrafisksMEIYSSANPDDYNmklHLQRAFLSEILDKKDIKIYHLGAMEERLKHR 296
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   305 lletKVLVILDNVSNKDQVDALLGERNWIKKGSKILITTSDKSLMIQSLVNDTYEVPPLSDKDAIKHFIRYAFDGNEgaa 384
Cdd:PLN03210  297 ----KVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--- 369
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   385 pgPGQGnFPKLSKDfVHYTKGN-PLALQMLGKELLGKDESHWglkLNALDQHHNSPPGQsICKMLqRVwegSYKALSQKE 463
Cdd:PLN03210  370 --PPDG-FMELASE-VALRAGNlPLGLNVLGSYLRGRDKEDW---MDMLPRLRNGLDGK-IEKTL-RV---SYDGLNNKK 437
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   464 KDALL-DIAC-FRSQDENYVASLL-DSDGPSNI-LEDLVNKFMINIYAGKVDMHDTLYMLSKELGReaTATDRKGRHR-L 538
Cdd:PLN03210  438 DKAIFrHIAClFNGEKVNDIKLLLaNSDLDVNIgLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVR--AQSNEPGEREfL 515
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   539 WHHHTIIAVLDKNKGGSNIRSIFLDLsDITRKWCFYRHAFAMMRDLRYLKIYSTHCPQEceSDIKLNFPEGLLLPLNEVR 618
Cdd:PLN03210  516 VDAKDICDVLEDNTGTKKVLGITLDI-DEIDELHIHENAFKGMRNLLFLKFYTKKWDQK--KEVRWHLPEGFDYLPPKLR 592
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   619 YLHWLKFPLKEVPQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLNTLAGLGKAQNLQELNLEGCTALKE 698
Cdd:PLN03210  593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE 672
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   699 MHVDMENMKFLVFLNLRGCTSLKSLPE-IQLISLKTLILSGCSKFKTFQVISDKLEALYLDGTAIKELPCDIgRLQRLVM 777
Cdd:PLN03210  673 LPSSIQYLNKLEDLDMSRCENLEILPTgINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDE 751
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   778 LNM-------------------------------------------------------KGCKKLKRLPDSLgQLKALEEL 802
Cdd:PLN03210  752 LILcemkseklwervqpltplmtmlspsltrlflsdipslvelpssiqnlhklehleiENCINLETLPTGI-NLESLESL 830
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   803 ILSGCSKLNEFPETWGNMSRleiLLLDETAIKDMP----KILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCKNLT 878
Cdd:PLN03210  831 DLSGCSRLRTFPDISTNISD---LNLSRTGIEEVPwwieKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   879 HVpqlppnlqylNVHGCSSLKTVAKPLVCSIPMKHVNSSFIftNCNELEQAAkeeivvyaerkchLLasalkrcdescVP 958
Cdd:PLN03210  908 EA----------SWNGSPSEVAMATDNIHSKLPSTVCINFI--NCFNLDQEA-------------LL-----------QQ 951
                        1050      1060
                  ....*....|....*....|....*
gi 15238668   959 EILFCT-SFPGCEMPSWFSHDAIGS 982
Cdd:PLN03210  952 QSIFKQlILSGEEVPSYFTHRTTGA 976
C-JID super family cl45530
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron ...
966-1014 1.37e-09

C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron microscopy (cryoEM) structures of plant intracellular immune receptors containing Toll/interleukin-1 receptor (TIR, PF01582), nucleotide-binding (NB-ARC, PF00931) and leucine-rich repeat (LRR) domains (TIR-NLRs). Structurally, the C-JID core is represented by a beta-sandwich made up of 8 to 9 beta-strands. C-JID matches the so-called post LRR domain originally detected via a set of MEME motifs. The domain showed a strong distribution bias towards TIR-NLRs of dicotyledonous plant species despite broader taxonomic distribution of TIR-NLR in plant groups. Structure-function analyses of cryoEM structures suggest that C-JID domains play a role in substrate-recognition, such as binding to effector proteins from pathogens, and thus are involved in the initiation of signaling by TIR-NLR receptors. Presence of C-JID (or post-LRR) and its importance for the function of Arabidopsis TIR-NLR RPS4 that partners with RRS1 for effector recognition suggest that C-JID has additional functions.


The actual alignment was detected with superfamily member pfam20160:

Pssm-ID: 466313  Cd Length: 108  Bit Score: 56.69  E-value: 1.37e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15238668    966 FPGCEMPSWFSHDAIGSMVEFELPPHWNHNRLSGIALCVVVSFKNCKSH 1014
Cdd:pfam20160    1 LPGSQIPEWFNHQSTGSSISIKLPENWYNDNFLGFAVCAVGSLIPSLHN 49
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
1-982 3.37e-110

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 372.67  E-value: 3.37e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668     1 MTSSSS----WVKtdgetpqdQVFINFRGVELRKNFVSHLEKGLKRKGINAFIDTDEEMGQELS-VLLERIEGSRIALAI 75
Cdd:PLN03210    1 MASSSSssrnWVY--------DVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDpELKQAIRDSRIAVVV 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    76 FSPRYTESKWCLKELAKMKERTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELVKSTDKKTKKEWKEALQYVPFLTGI 155
Cdd:PLN03210   73 FSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGY 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   156 VLDEKSDEDEVINIIIRKVKEILNrrsegppskcsaLPPQRHqkrHETFWGIELRIKQLEEKLRFGSDETtRTIGVVGMP 235
Cdd:PLN03210  153 HSQNWPNEAKMIEEIANDVLGKLN------------LTPSND---FEDFVGIEDHIAKMSSLLHLESEEV-RMVGIWGSS 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   236 GIGKTTLATMLYEKWNDRFLRHVLI--------RDIHEASEEDGLN---YLATKFLQGLLKVENANIESVQAAHEAYKDQ 304
Cdd:PLN03210  217 GIGKTTIARALFSRLSRQFQSSVFIdrafisksMEIYSSANPDDYNmklHLQRAFLSEILDKKDIKIYHLGAMEERLKHR 296
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   305 lletKVLVILDNVSNKDQVDALLGERNWIKKGSKILITTSDKSLMIQSLVNDTYEVPPLSDKDAIKHFIRYAFDGNEgaa 384
Cdd:PLN03210  297 ----KVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--- 369
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   385 pgPGQGnFPKLSKDfVHYTKGN-PLALQMLGKELLGKDESHWglkLNALDQHHNSPPGQsICKMLqRVwegSYKALSQKE 463
Cdd:PLN03210  370 --PPDG-FMELASE-VALRAGNlPLGLNVLGSYLRGRDKEDW---MDMLPRLRNGLDGK-IEKTL-RV---SYDGLNNKK 437
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   464 KDALL-DIAC-FRSQDENYVASLL-DSDGPSNI-LEDLVNKFMINIYAGKVDMHDTLYMLSKELGReaTATDRKGRHR-L 538
Cdd:PLN03210  438 DKAIFrHIAClFNGEKVNDIKLLLaNSDLDVNIgLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVR--AQSNEPGEREfL 515
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   539 WHHHTIIAVLDKNKGGSNIRSIFLDLsDITRKWCFYRHAFAMMRDLRYLKIYSTHCPQEceSDIKLNFPEGLLLPLNEVR 618
Cdd:PLN03210  516 VDAKDICDVLEDNTGTKKVLGITLDI-DEIDELHIHENAFKGMRNLLFLKFYTKKWDQK--KEVRWHLPEGFDYLPPKLR 592
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   619 YLHWLKFPLKEVPQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLNTLAGLGKAQNLQELNLEGCTALKE 698
Cdd:PLN03210  593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE 672
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   699 MHVDMENMKFLVFLNLRGCTSLKSLPE-IQLISLKTLILSGCSKFKTFQVISDKLEALYLDGTAIKELPCDIgRLQRLVM 777
Cdd:PLN03210  673 LPSSIQYLNKLEDLDMSRCENLEILPTgINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDE 751
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   778 LNM-------------------------------------------------------KGCKKLKRLPDSLgQLKALEEL 802
Cdd:PLN03210  752 LILcemkseklwervqpltplmtmlspsltrlflsdipslvelpssiqnlhklehleiENCINLETLPTGI-NLESLESL 830
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   803 ILSGCSKLNEFPETWGNMSRleiLLLDETAIKDMP----KILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCKNLT 878
Cdd:PLN03210  831 DLSGCSRLRTFPDISTNISD---LNLSRTGIEEVPwwieKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   879 HVpqlppnlqylNVHGCSSLKTVAKPLVCSIPMKHVNSSFIftNCNELEQAAkeeivvyaerkchLLasalkrcdescVP 958
Cdd:PLN03210  908 EA----------SWNGSPSEVAMATDNIHSKLPSTVCINFI--NCFNLDQEA-------------LL-----------QQ 951
                        1050      1060
                  ....*....|....*....|....*
gi 15238668   959 EILFCT-SFPGCEMPSWFSHDAIGS 982
Cdd:PLN03210  952 QSIFKQlILSGEEVPSYFTHRTTGA 976
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
18-179 8.65e-42

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 150.59  E-value: 8.65e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668     18 QVFINFRGVELRKNFVSHLEKGLKRKGINAFIDT-DEEMGQELS-VLLERIEGSRIALAIFSPRYTESKWCLKELAKMKE 95
Cdd:pfam01582    2 DVFLSFRGSDTREWFVSHLLKELKQKGIKLFIDDrDLEPGEAIApELLSAIEKSRRSVVVLSPNYASSGWCLDELVKILE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668     96 RTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELVKSTDKKTKKEWKEALQYVPFLTGIvlDEKSDEDEVINIIIRKVK 175
Cdd:pfam01582   82 CALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANIWHS--KSVSDESKFWKKIAYDIS 159

                   ....
gi 15238668    176 EILN 179
Cdd:pfam01582  160 NKLN 163
TIR smart00255
Toll - interleukin 1 - resistance;
16-150 8.66e-39

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 141.31  E-value: 8.66e-39
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668      16 QDQVFINFRGVE-LRKNFVSHLEKGLKRKGINAFIDTDEEMGQELSVLLERIEGSRIALAIFSPRYTESKWCLKELAKMK 94
Cdd:smart00255    1 EYDVFISYSGKEdVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80
                            90       100       110       120       130
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 15238668      95 E-RTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELV-KSTDKKTKKEWKEALQYVP 150
Cdd:smart00255   81 EnALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYlKWPEDEKEQFWKKALYAVP 138
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
597-894 8.25e-27

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 114.65  E-value: 8.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  597 ECESDIKLNFPEGLLLPLNEVRYLHWLKFPLKEVPQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLNTL 676
Cdd:COG4886   10 LKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGL 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  677 AGLGKAQNLQELNLEGCTALkemhvdmENMKFLVFLNLRGcTSLKSLPEiQLISLKtlilsgcskfktfqvisdKLEALY 756
Cdd:COG4886   90 TDLGDLTNLTELDLSGNEEL-------SNLTNLESLDLSG-NQLTDLPE-ELANLT------------------NLKELD 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  757 LDGTAIKELPCDIGRLQRLVMLNMKGCkKLKRLPDSLGQLKALEELILSGCsKLNEFPETWGNMSRLEILLLDETAIKDM 836
Cdd:COG4886  143 LSNNQLTDLPEPLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKELDLSNN-QITDLPEPLGNLTNLEELDLSGNQLTDL 220
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15238668  837 PKIL----SVRRLCLNKNeKISRLPDLLNkFSQLQWLHLKYCKnLTHVPQLP--PNLQYLNVHG 894
Cdd:COG4886  221 PEPLanltNLETLDLSNN-QLTDLPELGN-LTNLEELDLSNNQ-LTDLPPLAnlTNLKTLDLSN 281
C-JID pfam20160
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron ...
966-1014 1.37e-09

C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron microscopy (cryoEM) structures of plant intracellular immune receptors containing Toll/interleukin-1 receptor (TIR, PF01582), nucleotide-binding (NB-ARC, PF00931) and leucine-rich repeat (LRR) domains (TIR-NLRs). Structurally, the C-JID core is represented by a beta-sandwich made up of 8 to 9 beta-strands. C-JID matches the so-called post LRR domain originally detected via a set of MEME motifs. The domain showed a strong distribution bias towards TIR-NLRs of dicotyledonous plant species despite broader taxonomic distribution of TIR-NLR in plant groups. Structure-function analyses of cryoEM structures suggest that C-JID domains play a role in substrate-recognition, such as binding to effector proteins from pathogens, and thus are involved in the initiation of signaling by TIR-NLR receptors. Presence of C-JID (or post-LRR) and its importance for the function of Arabidopsis TIR-NLR RPS4 that partners with RRS1 for effector recognition suggest that C-JID has additional functions.


Pssm-ID: 466313  Cd Length: 108  Bit Score: 56.69  E-value: 1.37e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15238668    966 FPGCEMPSWFSHDAIGSMVEFELPPHWNHNRLSGIALCVVVSFKNCKSH 1014
Cdd:pfam20160    1 LPGSQIPEWFNHQSTGSSISIKLPENWYNDNFLGFAVCAVGSLIPSLHN 49
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
1-982 3.37e-110

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 372.67  E-value: 3.37e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668     1 MTSSSS----WVKtdgetpqdQVFINFRGVELRKNFVSHLEKGLKRKGINAFIDTDEEMGQELS-VLLERIEGSRIALAI 75
Cdd:PLN03210    1 MASSSSssrnWVY--------DVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDpELKQAIRDSRIAVVV 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    76 FSPRYTESKWCLKELAKMKERTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELVKSTDKKTKKEWKEALQYVPFLTGI 155
Cdd:PLN03210   73 FSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGY 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   156 VLDEKSDEDEVINIIIRKVKEILNrrsegppskcsaLPPQRHqkrHETFWGIELRIKQLEEKLRFGSDETtRTIGVVGMP 235
Cdd:PLN03210  153 HSQNWPNEAKMIEEIANDVLGKLN------------LTPSND---FEDFVGIEDHIAKMSSLLHLESEEV-RMVGIWGSS 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   236 GIGKTTLATMLYEKWNDRFLRHVLI--------RDIHEASEEDGLN---YLATKFLQGLLKVENANIESVQAAHEAYKDQ 304
Cdd:PLN03210  217 GIGKTTIARALFSRLSRQFQSSVFIdrafisksMEIYSSANPDDYNmklHLQRAFLSEILDKKDIKIYHLGAMEERLKHR 296
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   305 lletKVLVILDNVSNKDQVDALLGERNWIKKGSKILITTSDKSLMIQSLVNDTYEVPPLSDKDAIKHFIRYAFDGNEgaa 384
Cdd:PLN03210  297 ----KVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--- 369
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   385 pgPGQGnFPKLSKDfVHYTKGN-PLALQMLGKELLGKDESHWglkLNALDQHHNSPPGQsICKMLqRVwegSYKALSQKE 463
Cdd:PLN03210  370 --PPDG-FMELASE-VALRAGNlPLGLNVLGSYLRGRDKEDW---MDMLPRLRNGLDGK-IEKTL-RV---SYDGLNNKK 437
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   464 KDALL-DIAC-FRSQDENYVASLL-DSDGPSNI-LEDLVNKFMINIYAGKVDMHDTLYMLSKELGReaTATDRKGRHR-L 538
Cdd:PLN03210  438 DKAIFrHIAClFNGEKVNDIKLLLaNSDLDVNIgLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVR--AQSNEPGEREfL 515
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   539 WHHHTIIAVLDKNKGGSNIRSIFLDLsDITRKWCFYRHAFAMMRDLRYLKIYSTHCPQEceSDIKLNFPEGLLLPLNEVR 618
Cdd:PLN03210  516 VDAKDICDVLEDNTGTKKVLGITLDI-DEIDELHIHENAFKGMRNLLFLKFYTKKWDQK--KEVRWHLPEGFDYLPPKLR 592
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   619 YLHWLKFPLKEVPQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLNTLAGLGKAQNLQELNLEGCTALKE 698
Cdd:PLN03210  593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE 672
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   699 MHVDMENMKFLVFLNLRGCTSLKSLPE-IQLISLKTLILSGCSKFKTFQVISDKLEALYLDGTAIKELPCDIgRLQRLVM 777
Cdd:PLN03210  673 LPSSIQYLNKLEDLDMSRCENLEILPTgINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDE 751
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   778 LNM-------------------------------------------------------KGCKKLKRLPDSLgQLKALEEL 802
Cdd:PLN03210  752 LILcemkseklwervqpltplmtmlspsltrlflsdipslvelpssiqnlhklehleiENCINLETLPTGI-NLESLESL 830
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   803 ILSGCSKLNEFPETWGNMSRleiLLLDETAIKDMP----KILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCKNLT 878
Cdd:PLN03210  831 DLSGCSRLRTFPDISTNISD---LNLSRTGIEEVPwwieKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   879 HVpqlppnlqylNVHGCSSLKTVAKPLVCSIPMKHVNSSFIftNCNELEQAAkeeivvyaerkchLLasalkrcdescVP 958
Cdd:PLN03210  908 EA----------SWNGSPSEVAMATDNIHSKLPSTVCINFI--NCFNLDQEA-------------LL-----------QQ 951
                        1050      1060
                  ....*....|....*....|....*
gi 15238668   959 EILFCT-SFPGCEMPSWFSHDAIGS 982
Cdd:PLN03210  952 QSIFKQlILSGEEVPSYFTHRTTGA 976
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
18-179 8.65e-42

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 150.59  E-value: 8.65e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668     18 QVFINFRGVELRKNFVSHLEKGLKRKGINAFIDT-DEEMGQELS-VLLERIEGSRIALAIFSPRYTESKWCLKELAKMKE 95
Cdd:pfam01582    2 DVFLSFRGSDTREWFVSHLLKELKQKGIKLFIDDrDLEPGEAIApELLSAIEKSRRSVVVLSPNYASSGWCLDELVKILE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668     96 RTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELVKSTDKKTKKEWKEALQYVPFLTGIvlDEKSDEDEVINIIIRKVK 175
Cdd:pfam01582   82 CALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANIWHS--KSVSDESKFWKKIAYDIS 159

                   ....
gi 15238668    176 EILN 179
Cdd:pfam01582  160 NKLN 163
TIR smart00255
Toll - interleukin 1 - resistance;
16-150 8.66e-39

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 141.31  E-value: 8.66e-39
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668      16 QDQVFINFRGVE-LRKNFVSHLEKGLKRKGINAFIDTDEEMGQELSVLLERIEGSRIALAIFSPRYTESKWCLKELAKMK 94
Cdd:smart00255    1 EYDVFISYSGKEdVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80
                            90       100       110       120       130
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 15238668      95 E-RTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELV-KSTDKKTKKEWKEALQYVP 150
Cdd:smart00255   81 EnALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYlKWPEDEKEQFWKKALYAVP 138
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
597-894 8.25e-27

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 114.65  E-value: 8.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  597 ECESDIKLNFPEGLLLPLNEVRYLHWLKFPLKEVPQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLNTL 676
Cdd:COG4886   10 LKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGL 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  677 AGLGKAQNLQELNLEGCTALkemhvdmENMKFLVFLNLRGcTSLKSLPEiQLISLKtlilsgcskfktfqvisdKLEALY 756
Cdd:COG4886   90 TDLGDLTNLTELDLSGNEEL-------SNLTNLESLDLSG-NQLTDLPE-ELANLT------------------NLKELD 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  757 LDGTAIKELPCDIGRLQRLVMLNMKGCkKLKRLPDSLGQLKALEELILSGCsKLNEFPETWGNMSRLEILLLDETAIKDM 836
Cdd:COG4886  143 LSNNQLTDLPEPLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKELDLSNN-QITDLPEPLGNLTNLEELDLSGNQLTDL 220
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15238668  837 PKIL----SVRRLCLNKNeKISRLPDLLNkFSQLQWLHLKYCKnLTHVPQLP--PNLQYLNVHG 894
Cdd:COG4886  221 PEPLanltNLETLDLSNN-QLTDLPELGN-LTNLEELDLSNNQ-LTDLPPLAnlTNLKTLDLSN 281
PLN03194 PLN03194
putative disease resistance protein; Provisional
14-113 5.37e-13

putative disease resistance protein; Provisional


Pssm-ID: 215626 [Multi-domain]  Cd Length: 187  Bit Score: 68.69  E-value: 5.37e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    14 TPQDqVFINFRGVELRKNFVSHLEKGLKRKGINAFIDTDE-EMGQELSVLLER-IEGSRIALAIFSPRYTESKWCLKELA 91
Cdd:PLN03194   25 KPCD-VFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNmKPGDKLFDKINSaIRNCKVGVAVFSPRYCESYFCLHELA 103
                          90       100
                  ....*....|....*....|..
gi 15238668    92 KMKERTEQkelvVIPIFYKVQP 113
Cdd:PLN03194  104 LIMESKKR----VIPIFCDVKP 121
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
19-114 1.76e-12

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 65.03  E-value: 1.76e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668     19 VFINFRGVElrKNFVSHLEKGLKRKGINAFIDT-DEEMGQELSVLLER-IEGSRIALAIFSPRYTESKWCLKELAKMKER 96
Cdd:pfam13676    1 VFISYAGED--RAWAEWLADALEAAGYRVWLDRwDIRPGDDWVEEIEEaIENSDRVLVVLSPNYLESPWCRAEWEAALAD 78
                           90
                   ....*....|....*...
gi 15238668     97 TEQKElVVIPIFYKVQPV 114
Cdd:pfam13676   79 PEGRK-RLIPVRLECDLE 95
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
638-893 2.23e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 70.35  E-value: 2.23e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  638 NLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKkLNTL-AGLGKAQNLQELNLEGCtALKEMHVDMENMKFLVFLNLRG 716
Cdd:COG4886  114 NLESLDLSGNQLTDLPEELANLTNLKELDLSNNQ-LTDLpEPLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKELDLSN 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  717 cTSLKSLPEI--QLISLKTLILSGCsKFKTF-QVISD--KLEALYLDGTAIKELPcDIGRLQRLVMLNMKGCKkLKRLPD 791
Cdd:COG4886  192 -NQITDLPEPlgNLTNLEELDLSGN-QLTDLpEPLANltNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNNQ-LTDLPP 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  792 sLGQLKALEELILSGCSKLNEFPETWGNMSRLEILLLDETAIKDMPKILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHL 871
Cdd:COG4886  268 -LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSL 346
                        250       260
                 ....*....|....*....|..
gi 15238668  872 KYCKNLTHVPQLPPNLQYLNVH 893
Cdd:COG4886  347 LALLTLLLLLNLLSLLLTLLLT 368
NB-ARC pfam00931
NB-ARC domain;
229-425 3.00e-10

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 62.01  E-value: 3.00e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    229 IGVVGMPGIGKTTLATMLYEKWND---RFLRHVLIRDIHEASEEDGLNYLATKFlqGLLKVENANIESVQAAHEAYkdQL 305
Cdd:pfam00931   21 VGIHGMGGVGKTTLAAQIFNDFDEvegHFDSVAWVVVSKTFTISTLQQTILQNL--GLSEDDWDNKEEGELARKIR--RA 96
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    306 LETK-VLVILDNVSNKDQVDALLGERNWIKKGSKILITTSDKSLM-IQSLVNDTYEVPPLSDKDAIKHFIRYAFDGNEGA 383
Cdd:pfam00931   97 LLTKrFLLVLDDVWDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAgRVGGPSDPHEVELLEPDEAWELFENKVFPKTLGE 176
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 15238668    384 APgpgqgNFPKLSKDFVHYTKGNPLALQMLGKELLGKD-ESHW 425
Cdd:pfam00931  177 CE-----LLEDVAKEIVEKCRGLPLALKVLGGLLSCKKtVEEW 214
C-JID pfam20160
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron ...
966-1014 1.37e-09

C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron microscopy (cryoEM) structures of plant intracellular immune receptors containing Toll/interleukin-1 receptor (TIR, PF01582), nucleotide-binding (NB-ARC, PF00931) and leucine-rich repeat (LRR) domains (TIR-NLRs). Structurally, the C-JID core is represented by a beta-sandwich made up of 8 to 9 beta-strands. C-JID matches the so-called post LRR domain originally detected via a set of MEME motifs. The domain showed a strong distribution bias towards TIR-NLRs of dicotyledonous plant species despite broader taxonomic distribution of TIR-NLR in plant groups. Structure-function analyses of cryoEM structures suggest that C-JID domains play a role in substrate-recognition, such as binding to effector proteins from pathogens, and thus are involved in the initiation of signaling by TIR-NLR receptors. Presence of C-JID (or post-LRR) and its importance for the function of Arabidopsis TIR-NLR RPS4 that partners with RRS1 for effector recognition suggest that C-JID has additional functions.


Pssm-ID: 466313  Cd Length: 108  Bit Score: 56.69  E-value: 1.37e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15238668    966 FPGCEMPSWFSHDAIGSMVEFELPPHWNHNRLSGIALCVVVSFKNCKSH 1014
Cdd:pfam20160    1 LPGSQIPEWFNHQSTGSSISIKLPENWYNDNFLGFAVCAVGSLIPSLHN 49
NACHT COG5635
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
84-479 6.70e-09

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


Pssm-ID: 444362 [Multi-domain]  Cd Length: 935  Bit Score: 60.20  E-value: 6.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   84 KWCLKELAKMKERTEQKELVVIPIFYKVQPVTVKELKGDFGDKFRELVKSTDKKTKKEWKEALQYVPFLTGIVLDEKSDE 163
Cdd:COG5635   34 LLALVALGLALLALLDLLLADLGALLALVSRSALSAAALLARALSALLLVLLLLESLLLLLLLLLLLAEALLALLELAAL 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  164 DEVINIIIRKVKEILNRRSEGPPSKCSALPPQRHQKRHETFWGI----ELRIKQLEEKLRFGSDETTRTIGVVGMPGIGK 239
Cdd:COG5635  114 LKAVLLSLSGGSDLVLLLSESDLLLALLILLLDADGLLVSLDDLyvplNLLERIESLKRLELLEAKKKRLLILGEPGSGK 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  240 TTLATMLYEKWNDRFLRH-----VLI--RDIheASEEDGLNYLAtKFLQGLLKVENANIEsvqaaheaykDQLLETKVLV 312
Cdd:COG5635  194 TTLLRYLALELAERYLDAedpipILIelRDL--AEEASLEDLLA-EALEKRGGEPEDALE----------RLLRNGRLLL 260
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  313 ILDN---VSNKDQVDALLGE-RNWIKK--GSKILITTSDKSLMIQSLVN-DTYEVPPLSDKDaIKHFIRYAFDGNEGAAP 385
Cdd:COG5635  261 LLDGldeVPDEADRDEVLNQlRRFLERypKARVIITSRPEGYDSSELEGfEVLELAPLSDEQ-IEEFLKKWFEATERKAE 339
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  386 GPGQ--GNFPKLsKDFVhytkGNPLALQMLgkellgkdeshwglkLNALDQHHNSPPGQS-----ICKMLQRVWE----- 453
Cdd:COG5635  340 RLLEalEENPEL-RELA----RNPLLLTLL---------------ALLLRERGELPDTRAelyeqFVELLLERWDeqrgl 399
                        410       420
                 ....*....|....*....|....*.
gi 15238668  454 GSYKALSQKEKDALLDIACFRSQDEN 479
Cdd:COG5635  400 TIYRELSREELRELLSELALAMQENG 425
ATPase_2 pfam01637
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is ...
208-413 1.25e-05

ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.


Pssm-ID: 376582 [Multi-domain]  Cd Length: 222  Bit Score: 47.70  E-value: 1.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    208 ELRIKQLEEKLRFGsdetTRTIGVV-GMPGIGKTTLATMLYEKWNDRFLRHVLIRDIHEASEE-----DGLNYLATKFLQ 281
Cdd:pfam01637    5 EKELKELEEWAERG----PNLIYVIyGPEGCGKTALLRESIENLLDLGYYVIYYDPLRRYFISkldrfEEVRRLAEALGI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    282 GLLKVENANIESVQAAHEAYKDQLLE--TKVLVILDNV-------SNKDQVDALLgerNWIKKGSK------ILITTSDk 346
Cdd:pfam01637   81 AVPKAELEESKLAFLAIELLLEALKRrgKKIAIIIDEVqqaiglnGAELLVKELL---NLIEYLTKeyhlchVICLSSE- 156
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15238668    347 SLMIQSLVN--------DTYEVPPLsDKDAIKHFIRYAFDGNEgaapgpgqgNFPKLSKDFV-HYTKGNPLALQML 413
Cdd:pfam01637  157 GLFIELVYYkspligrhRWALVDPL-DKETAWNFLKEGFKELY---------ELSKEDFEEIwRYTGGNPKYLEEL 222
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
211-317 7.73e-05

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 44.42  E-value: 7.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    211 IKQLEEKLRFGSDETTRTIGVVGMPGIGKTTLATML---------------------YEKWNDRFLRHVLIRDIHEASEE 269
Cdd:pfam13191    9 LEQLLDALDRVRSGRPPSVLLTGEAGTGKTTLLRELlralerdggyflrgkcdenlpYSPLLEALTREGLLRQLLDELES 88
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15238668    270 DGLNYLATKFLQGLLKVENANIESVQAAHEAYKDQL-----LETKVLVILDNV 317
Cdd:pfam13191   89 SLLEAWRAALLEALAPVPELPGDLAERLLDLLLRLLdllarGERPLVLVLDDL 141
COG3903 COG3903
Predicted ATPase [General function prediction only];
224-364 1.09e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443109 [Multi-domain]  Cd Length: 933  Bit Score: 46.55  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668  224 ETTRTIGVVGMPGIGKTTLATMLYEKWNDRFLRHVLIRDIHEASEEDGLnyLATkFLQGLlkveNANIESVQAAHEAYKD 303
Cdd:COG3903  174 SAARLVTLTGPGGVGKTRLALEVAHRLADRFPDGVWFVDLAGVTDPALV--LAA-VARAL----GVRDAPGRDPAARLRA 246
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15238668  304 QLLETKVLVILDNVSNK-----DQVDALLGERNwikkGSKILItTSDKSLMIQSLVndTYEVPPLS 364
Cdd:COG3903  247 ALADRRLLLVLDNCEHVvdaaaALVRPLLPAAP----GLRVLA-TSREPLGLPGER--VLPLPPLA 305
PRK15386 PRK15386
type III secretion effector GogB;
767-910 2.03e-04

type III secretion effector GogB;


Pssm-ID: 237954 [Multi-domain]  Cd Length: 426  Bit Score: 45.25  E-value: 2.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   767 CDIGRL----QRLVMLNMKGCKKLKRLPDSLGQlkALEELILSGCSKLNEFPETwgnMSRLEILLLDETAIKDMPKILSV 842
Cdd:PRK15386   62 CDIESLpvlpNELTEITIENCNNLTTLPGSIPE--GLEKLTVCHCPEISGLPES---VRSLEIKGSATDSIKNVPNGLTS 136
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15238668   843 RRLCLNKNEKISRLPDLLNKfsQLQWLHLKYCKNLTHVPQLPPNLQYLNVHgcSSLKTVAKPLVCSIP 910
Cdd:PRK15386  137 LSINSYNPENQARIDNLISP--SLKTLSLTGCSNIILPEKLPESLQSITLH--IEQKTTWNISFEGFP 200
LRR_3 pfam07725
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the ...
638-657 5.10e-04

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model.


Pssm-ID: 429621 [Multi-domain]  Cd Length: 20  Bit Score: 38.09  E-value: 5.10e-04
                           10        20
                   ....*....|....*....|
gi 15238668    638 NLVDLKLPYSEIERVWEDNK 657
Cdd:pfam07725    1 NLVELNMPYSKLEKLWEGVK 20
NACHT pfam05729
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ...
227-375 1.53e-03

NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.


Pssm-ID: 428606 [Multi-domain]  Cd Length: 166  Bit Score: 40.75  E-value: 1.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    227 RTIGVVGMPGIGKTTLATMLYEKWNDRFL----RHVLIRDIHEASEEDGLNYLATkFLQGLLKVENANIESVQAAHeayk 302
Cdd:pfam05729    1 RTVILQGEAGSGKTTLLQKLALLWAQGKLpqgfDFVFFLPCRELSRSGNARSLAD-LLFSQWPEPAAPVSEVWAVI---- 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    303 dQLLETKVLVILD----------NVSNKDQVDALLgeRNWIKK----GSKILITT-SDKSLMIQSLVNDT--YEVPPLSD 365
Cdd:pfam05729   76 -LELPERLLLILDgldelvsdlgQLDGPCPVLTLL--SSLLRKkllpGASLLLTVrPDALRDLRRGLEEPryLEVRGFSE 152
                          170
                   ....*....|
gi 15238668    366 KDAIKHFIRY 375
Cdd:pfam05729  153 SDRKQYVRKY 162
PLN03150 PLN03150
hypothetical protein; Provisional
752-829 2.20e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 42.11  E-value: 2.20e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15238668   752 LEALYLDGTAIK-ELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEILLLD 829
Cdd:PLN03150  420 IDGLGLDNQGLRgFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
752-887 3.01e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 41.76  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668   752 LEALYLDGTAIK-ELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEILLLDE 830
Cdd:PLN00113  142 LETLDLSNNMLSgEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15238668   831 TAI-----KDMPKILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLkYCKNLTHvpQLPPNL 887
Cdd:PLN00113  222 NNLsgeipYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL-YQNKLSG--PIPPSI 280
AAA_18 pfam13238
AAA domain;
229-349 3.79e-03

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 38.95  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15238668    229 IGVVGMPGIGKTTLATMLYEKWNdrflRHVLIRDIHeasEEDGLNYLATKFLQGLLKVENANIESVQAAHEAYkDQLLET 308
Cdd:pfam13238    1 ILITGTPGVGKTTLAKELSKRLG----FGDNVRDLA---LENGLVLGDDPETRESKRLDEDKLDRLLDLLEEN-AALEEG 72
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 15238668    309 KVLVIldnvsnkDQVDALLGERNWiKKGSKILITTSDKSLM 349
Cdd:pfam13238   73 GNLII-------DGHLAELEPERA-KDLVGIVLRASPEELL 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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