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Conserved domains on  [gi|15242279|ref|NP_197039|]
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early nodulin-like protein 17 [Arabidopsis thaliana]

Protein Classification

cupredoxin domain-containing protein; multicopper oxidase( domain architecture ID 10181141)

cupredoxin domain-containing protein may contain a type I copper center and be involved in inter-molecular electron transfer reactions| multicopper oxidase (MCO) that couples the oxidation of a substrate with a four-electron reduction of molecular oxygen to water, and which may contain three cupredoxin domains that include one mononuclear and one trinuclear copper center; similar to Pleurotus ostreatus laccase-2 that may be involved in lignin degradation and detoxification of lignin-derived products

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 27-125 4.12e-53

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


:

Pssm-ID: 259903  Cd Length: 99  Bit Score: 164.10  E-value: 4.12e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279  27 KKYTVGEN-KFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGaGRDIVTLNQTKH 105
Cdd:cd11017   1 TLHTVGGNrIGWNPNINYTDWAKMHGFYSGDWLVFRYQRGRHNVVQVNETGYDNCDASNPISNYSSG-GRDIFQLNETKR 79

                        90       100
                ....*....|....*....|
gi 15242279 106 YYLLDGKGGCYGGMKLSVKV 125
Cdd:cd11017  80 YYFICGRGYCYGGMKLAITV 99
 
Name Accession Description Interval E-value
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 27-125 4.12e-53

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259903  Cd Length: 99  Bit Score: 164.10  E-value: 4.12e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279  27 KKYTVGEN-KFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGaGRDIVTLNQTKH 105
Cdd:cd11017   1 TLHTVGGNrIGWNPNINYTDWAKMHGFYSGDWLVFRYQRGRHNVVQVNETGYDNCDASNPISNYSSG-GRDIFQLNETKR 79

                        90       100
                ....*....|....*....|
gi 15242279 106 YYLLDGKGGCYGGMKLSVKV 125
Cdd:cd11017  80 YYFICGRGYCYGGMKLAITV 99
PLN03148 PLN03148
Blue copper-like protein; Provisional
 11-165 1.13e-39

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 132.31  E-value: 1.13e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279   11 VVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWT 90
Cdd:PLN03148   5 LLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWT 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15242279   91 rgAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAPVKNIGSVSMVTGLAQFMIPVSLFAFpAMW 165
Cdd:PLN03148  85 --SGKDFIPLNKAKRYYFICGNGQCFNGMKVTILVHPLPPPPSHTAAANGAKSHSAAPAAFHKGLVALRGL-VLW 156
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 37-119 7.54e-39

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 127.46  E-value: 7.54e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279    37 WNPNI--NYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTrgAGRDIVTLNQ-TKHYYLLDGKG 113
Cdd:pfam02298   1 WTVNAesDYTTWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYT--TGSDKVTLTKpGPNYFICGVPG 78


                  ....*.
gi 15242279   114 GCYGGM 119
Cdd:pfam02298  79 HCKFGM 84
 
Name Accession Description Interval E-value
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 27-125 4.12e-53

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259903  Cd Length: 99  Bit Score: 164.10  E-value: 4.12e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279  27 KKYTVGEN-KFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGaGRDIVTLNQTKH 105
Cdd:cd11017   1 TLHTVGGNrIGWNPNINYTDWAKMHGFYSGDWLVFRYQRGRHNVVQVNETGYDNCDASNPISNYSSG-GRDIFQLNETKR 79

                        90       100
                ....*....|....*....|
gi 15242279 106 YYLLDGKGGCYGGMKLSVKV 125
Cdd:cd11017  80 YYFICGRGYCYGGMKLAITV 99
PLN03148 PLN03148
Blue copper-like protein; Provisional
 11-165 1.13e-39

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 132.31  E-value: 1.13e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279   11 VVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWT 90
Cdd:PLN03148   5 LLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWT 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15242279   91 rgAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAPVKNIGSVSMVTGLAQFMIPVSLFAFpAMW 165
Cdd:PLN03148  85 --SGKDFIPLNKAKRYYFICGNGQCFNGMKVTILVHPLPPPPSHTAAANGAKSHSAAPAAFHKGLVALRGL-VLW 156
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 37-119 7.54e-39

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 127.46  E-value: 7.54e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279    37 WNPNI--NYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTrgAGRDIVTLNQ-TKHYYLLDGKG 113
Cdd:pfam02298   1 WTVNAesDYTTWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYT--TGSDKVTLTKpGPNYFICGVPG 78


                  ....*.
gi 15242279   114 GCYGGM 119
Cdd:pfam02298  79 HCKFGM 84
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 27-125 1.90e-30

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 106.58  E-value: 1.90e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279  27 KKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTrgAGRDIVTLNQTKHY 106
Cdd:cd04216   1 TDYTVGDSNGWDLPVNYTAWASGKTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYT--SGNDSVTLTKPGTR 78

                        90       100
                ....*....|....*....|
gi 15242279 107 YLLDGKGG-CYGGMKLSVKV 125
Cdd:cd04216  79 YFICGVPGhCQSGMKLAINV 98
Stellacyanin cd13920
Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a ...
 27-125 2.23e-21

Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a subclass of the phytocyanins, a ubiquitous family of plant cupredoxins. Stellacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue. The glutamine residue substitutes for a methione ligand typically found in other blue copper proteins. The exact function of stellacyanin is unknown. However, stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall.


Pssm-ID: 259987 [Multi-domain]  Cd Length: 101  Bit Score: 83.13  E-value: 2.23e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279  27 KKYTVGENKFWN--PNIN-YTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGrdIVTLNQT 103
Cdd:cd13920   1 TDHIVGGSLGWSipPNASfYTDWAANRTFRVGDSLVFNFEAGVHNVVEVSKEEYDNCTTTNPIKVFTTGPV--IITLNET 78

                        90       100
                ....*....|....*....|...
gi 15242279 104 KHYYLLDGKGG-CYGGMKLSVKV 125
Cdd:cd13920  79 GTRYFICTVGNhCSLGQKVSINV 101
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 27-125 3.47e-17

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 72.69  E-value: 3.47e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279  27 KKYTVGENKFW----NPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTrgAGRDIVTLNQ 102
Cdd:cd11019   1 REFKVGGKDGWkvppSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFN--DGNTKFTLDR 78

                        90       100
                ....*....|....*....|....
gi 15242279 103 TKHYYLLDG-KGGCYGGMKLSVKV 125
Cdd:cd11019  79 SGPFYFISGaPGHCEKGQKLIVVV 102
Mavicyanin cd11014
Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a ...
 29-125 1.08e-16

Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini) peelings. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Mavicyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue, like in the case of stellacyanin. The biological roles of mavicyanin have not been elucidated yet.


Pssm-ID: 259900  Cd Length: 101  Bit Score: 71.27  E-value: 1.08e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279  29 YTVGENKFWNPNI--NYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAgrDIVTLNQTKHY 106
Cdd:cd11014   3 YKVGDSDGWTVYDsdYYYKWSSSKTFHVGDSLIFQYNKEFHDVTEVTGEEFESCNSTSPIAVYNTGH--DIIKLTKPGQY 80

                        90       100
                ....*....|....*....|
gi 15242279 107 YLLDGKGG-CYGGMKLSVKV 125
Cdd:cd11014  81 YFICGVPGhCDSGQKLQVNV 100
Plantacyanin cd11013
Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong ...
 29-125 1.87e-16

Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Plantacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The exact function of plantacyanin is unknown. However plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and be involved in plant defense responses.


Pssm-ID: 259899  Cd Length: 95  Bit Score: 70.46  E-value: 1.87e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15242279  29 YTVGENKFWNPNINYtiWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIAdhPIRNWTRGAGRDIVTLNQTKHYYL 108
Cdd:cd11013   3 YVVGDSIGWTFGVVG--WPNGKTFRAGDVLVFNYDPSAHNVVVVDEGGYRTCKA--PPGAIVYTSGDDKITLPKGVNYFI 78

                        90
                ....*....|....*..
gi 15242279 109 LDGKGGCYGGMKLSVKV 125
Cdd:cd11013  79 CSFPGHCTSGMKIAVTA 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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