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Conserved domains on  [gi|22326769|ref|NP_196830|]
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myosin [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
189-321 2.45e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 2.45e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    189 EASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQNRD 268
Cdd:TIGR02168  240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 22326769    269 GTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRTMTHRMILTQKEMEE 321
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
rad23 super family cl36702
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
110-166 3.98e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


The actual alignment was detected with superfamily member TIGR00601:

Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 3.98e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 22326769   110 IAKPKPVASSAVVPPPKISRSSSPANSPAVSVRASQPPVPPSKLRNQTTNPLPVATP 166
Cdd:TIGR00601  74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
189-321 2.45e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 2.45e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    189 EASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQNRD 268
Cdd:TIGR02168  240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 22326769    269 GTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRTMTHRMILTQKEMEE 321
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
189-306 1.37e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.01  E-value: 1.37e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 189 EASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQNRD 268
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 22326769 269 GTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLR 306
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
Leu_zip pfam15294
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 ...
193-317 1.85e-03

Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 (LZTFL1) and Leucine zipper protein 2 (LUZP2).


Pssm-ID: 464620 [Multi-domain]  Cd Length: 276  Bit Score: 40.46  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769   193 LRDELDMLQEENdsilEKLRledekckeaeARVRELEKQVTSLGEGVSLEAKLLSRKEAA----------------LRQR 256
Cdd:pfam15294 131 LHMEIERLKEEN----EKLK----------ERLKTLESQATQALDEKSKLEKALKDLQKEqgakkdvksnlkeisdLEEK 196
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22326769   257 EAALK-DARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESEV-------NGLRTMthRMILTQK 317
Cdd:pfam15294 197 MAALKsDLEKTLNASTALQKSLEEDLASTKHELLKVQEQLEMAEKELekkfqqtAAYRNM--KEMLTKK 263
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
110-166 3.98e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 3.98e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 22326769   110 IAKPKPVASSAVVPPPKISRSSSPANSPAVSVRASQPPVPPSKLRNQTTNPLPVATP 166
Cdd:TIGR00601  74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
96-252 6.79e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 6.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769   96 APPPLSFTR---NPSSTIAKPKPVASSAVVPPPKISRSSSPANSPAVSVRASQPPVPP--------SKLRNQTTNPLPVA 164
Cdd:PRK07764 409 APAPAAAAPaaaAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPapapaaapEPTAAPAPAPPAAP 488
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769  165 TPKTEKRVLAdighfngkdskdQHEASALRDELDMLQEENDSILEKLRLEDEK---CKEAEARVRELEKQVTSLGEGVSL 241
Cdd:PRK07764 489 APAAAPAAPA------------APAAPAGADDAATLRERWPEILAAVPKRSRKtwaILLPEATVLGVRGDTLVLGFSTGG 556
                        170
                 ....*....|.
gi 22326769  242 EAKLLSRKEAA 252
Cdd:PRK07764 557 LARRFASPGNA 567
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
189-321 2.45e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 2.45e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    189 EASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQNRD 268
Cdd:TIGR02168  240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 22326769    269 GTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRTMTHRMILTQKEMEE 321
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
189-306 1.37e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.01  E-value: 1.37e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 189 EASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQNRD 268
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 22326769 269 GTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLR 306
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
182-301 1.98e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 47.62  E-value: 1.98e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 182 KDSKDQHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALK 261
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 22326769 262 DARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESE 301
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
167-321 9.61e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.43  E-value: 9.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    167 KTEKRVLADIGHFNGKDSKDQHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLL 246
Cdd:TIGR02168  316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22326769    247 SRKEAALRQREAALKDARQNRDGTNRETTALRSQVETAKLEtaAIVAQLQGAESEVNGLRTMTHRMILTQKEMEE 321
Cdd:TIGR02168  396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELERLEEALEELRE 468
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
186-301 4.19e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 4.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769  186 DQHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGeGVSLEA--KLLSRKEAALRQRE------ 257
Cdd:COG4913  286 AQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNG-GDRLEQleREIERLERELEERErrrarl 364
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 22326769  258 -AALKDARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESE 301
Cdd:COG4913  365 eALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE 409
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
189-306 6.53e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 42.75  E-value: 6.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    189 EASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAK-----------LLSRKEAALRQR- 256
Cdd:TIGR02169  238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKekigeleaeiaSLERSIAEKEREl 317
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 22326769    257 ---EAALKDARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLR 306
Cdd:TIGR02169  318 edaEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
190-323 7.09e-04

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 42.38  E-value: 7.09e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 190 ASALRDELDMLQEENDSILEKL-RLEDEKckeaEARVRELEkqvtslgEGVSLEAKLLSRKEAALRQREAALKDARQNRD 268
Cdd:COG0542 399 AARVRMEIDSKPEELDELERRLeQLEIEK----EALKKEQD-------EASFERLAELRDELAELEEELEALKARWEAEK 467
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 22326769 269 GTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRTMtHRMILTQKEMEEVV 323
Cdd:COG0542 468 ELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPL-LREEVTEEDIAEVV 521
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
187-301 9.87e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 9.87e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 187 QHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQN 266
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
                        90       100       110
                ....*....|....*....|....*....|....*
gi 22326769 267 RDGTNRETTALRSQVETAKLETAAIVAQLQGAESE 301
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
187-305 1.00e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    187 QHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQN 266
Cdd:TIGR02168  301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 22326769    267 RDGTNRETTALRSQVetakletAAIVAQLQGAESEVNGL 305
Cdd:TIGR02168  381 LETLRSKVAQLELQI-------ASLNNEIERLEARLERL 412
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
188-302 1.12e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 1.12e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 188 HEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVR-------ELEKQVTSLGEGVSLEAKLLSRKEAALRQREAAL 260
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEelrleleELELELEEAQAEEYELLAELARLEQDIARLEERR 311
                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 22326769 261 KDARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESEV 302
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
187-306 1.42e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.04  E-value: 1.42e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 187 QHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQN 266
Cdd:COG4372  44 QEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKE 123
                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 22326769 267 RDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLR 306
Cdd:COG4372 124 RQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQ 163
Leu_zip pfam15294
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 ...
193-317 1.85e-03

Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 (LZTFL1) and Leucine zipper protein 2 (LUZP2).


Pssm-ID: 464620 [Multi-domain]  Cd Length: 276  Bit Score: 40.46  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769   193 LRDELDMLQEENdsilEKLRledekckeaeARVRELEKQVTSLGEGVSLEAKLLSRKEAA----------------LRQR 256
Cdd:pfam15294 131 LHMEIERLKEEN----EKLK----------ERLKTLESQATQALDEKSKLEKALKDLQKEqgakkdvksnlkeisdLEEK 196
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22326769   257 EAALK-DARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESEV-------NGLRTMthRMILTQK 317
Cdd:pfam15294 197 MAALKsDLEKTLNASTALQKSLEEDLASTKHELLKVQEQLEMAEKELekkfqqtAAYRNM--KEMLTKK 263
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
185-265 2.01e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 39.91  E-value: 2.01e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 185 KDQHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDAR 264
Cdd:COG1579  86 RNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER 165

                .
gi 22326769 265 Q 265
Cdd:COG1579 166 E 166
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
187-307 2.24e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.81  E-value: 2.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    187 QHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQN 266
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 22326769    267 RDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRT 307
Cdd:TIGR02168  826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
187-306 2.43e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.69  E-value: 2.43e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 187 QHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQN 266
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 22326769 267 RDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLR 306
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
187-301 2.81e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.69  E-value: 2.81e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 187 QHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQN 266
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
                        90       100       110
                ....*....|....*....|....*....|....*
gi 22326769 267 RDGTNRETTALRSQVETAKLETAAIVAQLQGAESE 301
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
167-307 3.36e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.31  E-value: 3.36e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 167 KTEKRVLADIGHFNGKDSKDQHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLL 246
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22326769 247 SRKEAALRQREAALKDARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRT 307
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
110-166 3.98e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 3.98e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 22326769   110 IAKPKPVASSAVVPPPKISRSSSPANSPAVSVRASQPPVPPSKLRNQTTNPLPVATP 166
Cdd:TIGR00601  74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
187-326 4.67e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 4.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    187 QHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQN 266
Cdd:TIGR02168  823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22326769    267 RDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRTM-THRMILTQKEMEEVVLKR 326
Cdd:TIGR02168  903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKI 963
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
189-320 4.84e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 4.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769    189 EASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQNRD 268
Cdd:TIGR02168  804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 22326769    269 GTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRTMTHRMILTQKEME 320
Cdd:TIGR02168  884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935
HOOK pfam05622
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ...
169-326 4.88e-03

HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.


Pssm-ID: 461694 [Multi-domain]  Cd Length: 528  Bit Score: 39.67  E-value: 4.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769   169 EKRVLaDIGHFNGKDSKDQHEASALRDELDMLQEENDSiLEKLRLEDEKCKEAEARVRELEKQVtslgegvsleaKLLSR 248
Cdd:pfam05622  93 EKEVL-ELQHRNEELTSLAEEAQALKDEMDILRESSDK-VKKLEATVETYKKKLEDLGDLRRQV-----------KLLEE 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769   249 KEAALRQREAALKDARqnrdgtnRETTALRSQVETAKLEtaaiVAQLQGAESEVNG--------LRTMTHRMILTQKEME 320
Cdd:pfam05622 160 RNAEYMQRTLQLEEEL-------KKANALRGQLETYKRQ----VQELHGKLSEESKkadklefeYKKLEEKLEALQKEKE 228

                  ....*.
gi 22326769   321 EVVLKR 326
Cdd:pfam05622 229 RLIIER 234
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
185-322 6.61e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 461718 [Multi-domain]  Cd Length: 562  Bit Score: 39.24  E-value: 6.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769   185 KDQHEAS-----ALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGV-----SLEAKLLSRKEAALR 254
Cdd:pfam05701 130 KARHAAAvaelkSVKEELESLRKEYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELiatkeSLESAHAAHLEAEEH 209
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769   255 QREAAL----------KDARQNRDGTNR------ETTALRSQVETA-------KLETAAIVAQLQGAESEVNGLRTMTHR 311
Cdd:pfam05701 210 RIGAALareqdklnweKELKQAEEELQRlnqqllSAKDLKSKLETAsallldlKAELAAYMESKLKEEADGEGNEKKTST 289
                         170
                  ....*....|....*.
gi 22326769   312 MI-----LTQKEMEEV 322
Cdd:pfam05701 290 SIqaalaSAKKELEEV 305
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
96-252 6.79e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 6.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769   96 APPPLSFTR---NPSSTIAKPKPVASSAVVPPPKISRSSSPANSPAVSVRASQPPVPP--------SKLRNQTTNPLPVA 164
Cdd:PRK07764 409 APAPAAAAPaaaAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPapapaaapEPTAAPAPAPPAAP 488
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769  165 TPKTEKRVLAdighfngkdskdQHEASALRDELDMLQEENDSILEKLRLEDEK---CKEAEARVRELEKQVTSLGEGVSL 241
Cdd:PRK07764 489 APAAAPAAPA------------APAAPAGADDAATLRERWPEILAAVPKRSRKtwaILLPEATVLGVRGDTLVLGFSTGG 556
                        170
                 ....*....|.
gi 22326769  242 EAKLLSRKEAA 252
Cdd:PRK07764 557 LARRFASPGNA 567
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
187-326 7.45e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.15  E-value: 7.45e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 187 QHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQN 266
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769 267 RDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRTMTHRMILTQKEMEEVVLKR 326
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
181-307 8.89e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.13  E-value: 8.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22326769  181 GKDSKDQHEAsaLRDELDMLQEEndsileklrledekCKEAEARVRELEKQVTSLGEGVSLEAKLLSRKE-----AALRQ 255
Cdd:COG4913  605 GFDNRAKLAA--LEAELAELEEE--------------LAEAEERLEALEAELDALQERREALQRLAEYSWdeidvASAER 668
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 22326769  256 REAALKDARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRT 307
Cdd:COG4913  669 EIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEK 720
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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