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Conserved domains on  [gi|15240866|ref|NP_196397|]
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Flavin-binding monooxygenase family protein [Arabidopsis thaliana]

Protein Classification

flavin-containing monooxygenase( domain architecture ID 1750397)

flavin-containing monooxygenase (FMO) may act as an xenobiotic-metabolising enzyme that catalyzes the oxygenation of nucleophilic nitrogen, sulphur, phosphorus and selenium atoms in a range of structurally diverse compounds by using an NADPH cofactor and FAD prosthetic group

EC:  1.14.13.8
Gene Ontology:  GO:0004499|GO:0050661|GO:0050660
PubMed:  9538688

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN02172 super family cl40780
flavin-containing monooxygenase FMO GS-OX
 13-449 5.32e-158

flavin-containing monooxygenase FMO GS-OX


The actual alignment was detected with superfamily member PLN02172:

Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 455.47  E-value: 5.32e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   13 SKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNvEEEDPLG----RSsgsingelKVHSSIYSSLRLT 88
Cdd:PLN02172  10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPK-SESDPLSldptRS--------IVHSSVYESLRTN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   89 SPREIMGYSDFPFLAK---KGRDMRRFPGHKELWLYLKDFSEAFGLREMIRFNVRVEFVgekEEEDdvKKWIVRSReKFS 165
Cdd:PLN02172  81 LPRECMGYRDFPFVPRfddESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRV---EPVD--GKWRVQSK-NSG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  166 GKVMEEIFDAVVVATGHYSHPRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSA 245
Cdd:PLN02172 155 GFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIAS 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  246 KTLDiSSGLSKVISKHPNLLIHPQIESLEDDGKVIFVDGSWVVADTILYCTGYSYKFPFLESKGRIEVDDDRVGPLFEHT 325
Cdd:PLN02172 235 RASE-SDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHV 313

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  326 FPPCLSPSLSFVGIPRKLIGFPFFEAQAKWIAQVLSGKSSLPSPDQMLQSVDEFYRSRDLAGVPKHNTHDIADFT--YCD 403
Cdd:PLN02172 314 FPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGKIQseYLN 393

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*.
gi 15240866  404 KYADYVGFPHLEDWRKLLCLSALNNSQENLETYRDSWDDHELLQEA 449
Cdd:PLN02172 394 WIAEECGCPLVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEA 439
 
Name Accession Description Interval E-value
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
 13-449 5.32e-158

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 455.47  E-value: 5.32e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   13 SKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNvEEEDPLG----RSsgsingelKVHSSIYSSLRLT 88
Cdd:PLN02172  10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPK-SESDPLSldptRS--------IVHSSVYESLRTN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   89 SPREIMGYSDFPFLAK---KGRDMRRFPGHKELWLYLKDFSEAFGLREMIRFNVRVEFVgekEEEDdvKKWIVRSReKFS 165
Cdd:PLN02172  81 LPRECMGYRDFPFVPRfddESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRV---EPVD--GKWRVQSK-NSG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  166 GKVMEEIFDAVVVATGHYSHPRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSA 245
Cdd:PLN02172 155 GFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIAS 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  246 KTLDiSSGLSKVISKHPNLLIHPQIESLEDDGKVIFVDGSWVVADTILYCTGYSYKFPFLESKGRIEVDDDRVGPLFEHT 325
Cdd:PLN02172 235 RASE-SDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHV 313

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  326 FPPCLSPSLSFVGIPRKLIGFPFFEAQAKWIAQVLSGKSSLPSPDQMLQSVDEFYRSRDLAGVPKHNTHDIADFT--YCD 403
Cdd:PLN02172 314 FPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGKIQseYLN 393

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*.
gi 15240866  404 KYADYVGFPHLEDWRKLLCLSALNNSQENLETYRDSWDDHELLQEA 449
Cdd:PLN02172 394 WIAEECGCPLVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEA 439
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 16-360 9.02e-59

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 198.55  E-value: 9.02e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWfyqpnveeedplgrssgsingelkvHSSIYSSLRLTSPREIMG 95
Cdd:COG2072   9 VVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGGTW-------------------------RDNRYPGLRLDTPSHLYS 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  96 YSDFPFlakkGRDMRRFPGHKELWLYLKDFSEAFGLREMIRFNVRVEFVgEKEEEDDVkkWIVRSRekfSGKVMEeiFDA 175
Cdd:COG2072  64 LPFFPN----WSDDPDFPTGDEILAYLEAYADKFGLRRPIRFGTEVTSA-RWDEADGR--WTVTTD---DGETLT--ARF 131

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 176 VVVATGHYSHPRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSAKT-------- 247
Cdd:COG2072 132 VVVATGPLSRPKIPDIPGLEDFAGEQLHSADWRNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRTppwvlprp 211

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 248 --------------LDISSGLSK----------------------------------VIS-------KHPNL-LIHPQIE 271
Cdd:COG2072 212 nydpergrpanylgLEAPPALNRrdarawlrrllraqvkdpelglltpdyppgckrpLLStdyyealRRGNVeLVTGGIE 291

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 272 SLEDDGkVIFVDGSWVVADTILYCTGYSYKFPFLESkGRIEVDDDRVGP-LFEHTFPPCLsPSLSFVGIPRKLIGFPFF- 349
Cdd:COG2072 292 RITEDG-VVFADGTEHEVDVIVWATGFRADLPWLAP-LDVRGRDGRSGPrAYLGVVVPGF-PNLFFLGPNSPSGHSSLTl 368

                       410
                ....*....|...
gi 15240866 350 --EAQAKWIAQVL 360
Cdd:COG2072 369 gaERQARYIARLI 381
FMO-like pfam00743
Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone ...
 14-410 1.29e-50

Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.


Pssm-ID: 395602 [Multi-domain]  Cd Length: 531  Bit Score: 179.59  E-value: 1.29e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVEEedplGRssgsingelkvhSSIYSSLRLTSPREI 93
Cdd:pfam00743   2 KKVAVIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRFTENVEE----GR------------ASIYKSVITNTSKEM 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    94 MGYSDFPFlakkGRDMRRFPGHKELWLYLKDFSEAFGLREMIRFNVRVEFVGEKEEEDDVKKW-IVRSREkfsGKVMEEI 172
Cdd:pfam00743  66 SCFSDFPF----PEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWeVVTEHE---GKQESAV 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   173 FDAVVVATGHYSHPRLP--SIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSAKT--- 247
Cdd:pfam00743 139 FDAVMVCTGHHTNPHLPleSFPGIEKFKGQYFHSRDYKHPEGFTGKRVLVIGIGNSGGDIAVELSHTAAQVFLSTRRgsw 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   248 -----------LDI------SSGLSKVIS----------------KHPNLLIHPQIESL------EDD-------GKV-- 279
Cdd:pfam00743 219 vlsrvsdhgypWDMlfstrfTSFLRNILPtsisnwlmekqmnrrfNHENYGLKPKNRALskepvvNDDlpnrilcGAVkv 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   280 ------------IFVDGSWVVA-DTILYCTGYSYKFPFLEsKGRIEVDDDRVGpLFEHTFPPCLS-PSLSFVGIPRKLIG 345
Cdd:pfam00743 299 kpnvkeftetsaIFEDGTVEEDiDVVIFATGYTFAFPFLE-ESLVKVENNKVS-LYKYVFPPNLEkPTLAIIGLIQPLGS 376

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15240866   346 -FPFFEAQAKWIAQVLSGKSSLPSPDQMLQSVDEFYRSRDLAGVPKHNTHDIADF-TYCDKYADYVG 410
Cdd:pfam00743 377 iIPTVELQARWATRVFKGLCTLPSQSEMMAEINKRQEKKIKRFGDSQSHTIQTDYiDYMDELALFIG 443
TIGR00275 TIGR00275
flavoprotein, HI0933 family; The model when searched with a partial length search brings in ...
 18-190 1.03e-05

flavoprotein, HI0933 family; The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 272992 [Multi-domain]  Cd Length: 400  Bit Score: 47.59  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    18 VIGAGPAGLVSARELRKEGHKVVVLEQNEDVG--------GQWfyqpNVEEEDPLGRSSGSI--NGELkvhssIYSSLRL 87
Cdd:TIGR00275   2 IIGGGAAGLMAAITAARAGLSVLLLEKNKKIGkkllisggGRC----NLTNSCPTPEFVAYYprNGKF-----LRSALSR 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    88 TSPREIMGysdfpFLAKKG------RDMRRFP-GHKElwlylKDFSEAFgLREMIRFNVRVeFVGEKeeeddVKKwIVRS 160
Cdd:TIGR00275  73 FSNKDLID-----FFESLGlelkveEDGRVFPcSDSA-----ADVLDAL-LNELKELGVEI-LTNSK-----VKS-IEKE 134

                         170       180       190
                  ....*....|....*....|....*....|..
gi 15240866   161 REKFSGKVMEEIF--DAVVVATGHYSHPRLPS 190
Cdd:TIGR00275 135 DGGFGVETSGGEYeaDKVIIATGGLSYPQLGS 166
 
Name Accession Description Interval E-value
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
 13-449 5.32e-158

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 455.47  E-value: 5.32e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   13 SKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNvEEEDPLG----RSsgsingelKVHSSIYSSLRLT 88
Cdd:PLN02172  10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPK-SESDPLSldptRS--------IVHSSVYESLRTN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   89 SPREIMGYSDFPFLAK---KGRDMRRFPGHKELWLYLKDFSEAFGLREMIRFNVRVEFVgekEEEDdvKKWIVRSReKFS 165
Cdd:PLN02172  81 LPRECMGYRDFPFVPRfddESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRV---EPVD--GKWRVQSK-NSG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  166 GKVMEEIFDAVVVATGHYSHPRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSA 245
Cdd:PLN02172 155 GFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIAS 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  246 KTLDiSSGLSKVISKHPNLLIHPQIESLEDDGKVIFVDGSWVVADTILYCTGYSYKFPFLESKGRIEVDDDRVGPLFEHT 325
Cdd:PLN02172 235 RASE-SDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHV 313

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  326 FPPCLSPSLSFVGIPRKLIGFPFFEAQAKWIAQVLSGKSSLPSPDQMLQSVDEFYRSRDLAGVPKHNTHDIADFT--YCD 403
Cdd:PLN02172 314 FPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGKIQseYLN 393

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*.
gi 15240866  404 KYADYVGFPHLEDWRKLLCLSALNNSQENLETYRDSWDDHELLQEA 449
Cdd:PLN02172 394 WIAEECGCPLVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEA 439
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 16-360 9.02e-59

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 198.55  E-value: 9.02e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWfyqpnveeedplgrssgsingelkvHSSIYSSLRLTSPREIMG 95
Cdd:COG2072   9 VVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGGTW-------------------------RDNRYPGLRLDTPSHLYS 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  96 YSDFPFlakkGRDMRRFPGHKELWLYLKDFSEAFGLREMIRFNVRVEFVgEKEEEDDVkkWIVRSRekfSGKVMEeiFDA 175
Cdd:COG2072  64 LPFFPN----WSDDPDFPTGDEILAYLEAYADKFGLRRPIRFGTEVTSA-RWDEADGR--WTVTTD---DGETLT--ARF 131

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 176 VVVATGHYSHPRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSAKT-------- 247
Cdd:COG2072 132 VVVATGPLSRPKIPDIPGLEDFAGEQLHSADWRNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRTppwvlprp 211

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 248 --------------LDISSGLSK----------------------------------VIS-------KHPNL-LIHPQIE 271
Cdd:COG2072 212 nydpergrpanylgLEAPPALNRrdarawlrrllraqvkdpelglltpdyppgckrpLLStdyyealRRGNVeLVTGGIE 291

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 272 SLEDDGkVIFVDGSWVVADTILYCTGYSYKFPFLESkGRIEVDDDRVGP-LFEHTFPPCLsPSLSFVGIPRKLIGFPFF- 349
Cdd:COG2072 292 RITEDG-VVFADGTEHEVDVIVWATGFRADLPWLAP-LDVRGRDGRSGPrAYLGVVVPGF-PNLFFLGPNSPSGHSSLTl 368

                       410
                ....*....|...
gi 15240866 350 --EAQAKWIAQVL 360
Cdd:COG2072 369 gaERQARYIARLI 381
FMO-like pfam00743
Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone ...
 14-410 1.29e-50

Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.


Pssm-ID: 395602 [Multi-domain]  Cd Length: 531  Bit Score: 179.59  E-value: 1.29e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVEEedplGRssgsingelkvhSSIYSSLRLTSPREI 93
Cdd:pfam00743   2 KKVAVIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRFTENVEE----GR------------ASIYKSVITNTSKEM 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    94 MGYSDFPFlakkGRDMRRFPGHKELWLYLKDFSEAFGLREMIRFNVRVEFVGEKEEEDDVKKW-IVRSREkfsGKVMEEI 172
Cdd:pfam00743  66 SCFSDFPF----PEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWeVVTEHE---GKQESAV 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   173 FDAVVVATGHYSHPRLP--SIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSAKT--- 247
Cdd:pfam00743 139 FDAVMVCTGHHTNPHLPleSFPGIEKFKGQYFHSRDYKHPEGFTGKRVLVIGIGNSGGDIAVELSHTAAQVFLSTRRgsw 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   248 -----------LDI------SSGLSKVIS----------------KHPNLLIHPQIESL------EDD-------GKV-- 279
Cdd:pfam00743 219 vlsrvsdhgypWDMlfstrfTSFLRNILPtsisnwlmekqmnrrfNHENYGLKPKNRALskepvvNDDlpnrilcGAVkv 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   280 ------------IFVDGSWVVA-DTILYCTGYSYKFPFLEsKGRIEVDDDRVGpLFEHTFPPCLS-PSLSFVGIPRKLIG 345
Cdd:pfam00743 299 kpnvkeftetsaIFEDGTVEEDiDVVIFATGYTFAFPFLE-ESLVKVENNKVS-LYKYVFPPNLEkPTLAIIGLIQPLGS 376

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15240866   346 -FPFFEAQAKWIAQVLSGKSSLPSPDQMLQSVDEFYRSRDLAGVPKHNTHDIADF-TYCDKYADYVG 410
Cdd:pfam00743 377 iIPTVELQARWATRVFKGLCTLPSQSEMMAEINKRQEKKIKRFGDSQSHTIQTDYiDYMDELALFIG 443
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 14-315 2.44e-21

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 93.92  E-value: 2.44e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEqnedVGGQWFYQPNVEeedplgrssgsingelkvhssiysslrltsPREI 93
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIE----DEGTCPYGGCVL------------------------------SKAL 46

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    94 MGYSDFPFLAKKGRDMRRfpgHKElwlylkdfseafglREMIRFNVRVEFVGEKEEED-DVKKWIVRSREKFSGKVMEEI 172
Cdd:pfam07992  47 LGAAEAPEIASLWADLYK---RKE--------------EVVKKLNNGIEVLLGTEVVSiDPGAKKVVLEELVDGDGETIT 109

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   173 FDAVVVATGhySHPRLPSIKGMDS--WKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHL------- 243
Cdd:pfam07992 110 YDRLVIATG--ARPRLPPIPGVELnvGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEVTLiealdrl 187

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   244 -SAKTLDISSGLSKVISKHP-NLLIHPQIESLEDDGKVIFV---DGSWVVADTILYCTGYSYKFPFLE-------SKGRI 311
Cdd:pfam07992 188 lRAFDEEISAALEKALEKNGvEVRLGTSVKEIIGDGDGVEVilkDGTEIDADLVVVAIGRRPNTELLEaagleldERGGI 267


                  ....
gi 15240866   312 EVDD 315
Cdd:pfam07992 268 VVDE 271
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
23-326 2.99e-14

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 73.03  E-value: 2.99e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    23 PAGLVSARELRKEG-HKVVVLEqnedvggqwfyqpnveeedplgrsSGSIngelkVHSsIYS---SLRLTSP---REIMG 95
Cdd:pfam13738   1 PAGIGCAIALKKAGlEDYLILE------------------------KGNI-----GNS-FYRyptHMTFFSPsftSNGFG 50

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    96 YSDFPFLAKKG----RDMRRFPGHKELWLYLKDFSEAFGLRemIRFNVRVEFVgEKEEEDDVkkwIVRSREKFSGKvmee 171
Cdd:pfam13738  51 IPDLNAISPGTspafTFNREHPSGNEYAEYLRRVADHFELP--INLFEEVTSV-KKEDDGFV---VTTSKGTYQAR---- 120

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   172 ifdAVVVATGHYSHPRLPSIKGmdswkrKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHL-------S 244
Cdd:pfam13738 121 ---YVIIATGEFDFPNKLGVPE------LPKHYSYVKDFHPYAGQKVVVIGGYNSAVDAALELVRKGARVTVlyrgsewE 191

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   245 AKTLDISSGLS-------KVISKHPNLLIHP--QIESLEDDG---KVIFVDG-SWVVADTILYCTGYSYKFPFLEsKGRI 311
Cdd:pfam13738 192 DRDSDPSYSLSpdtlnrlEELVKNGKIKAHFnaEVKEITEVDvsyKVHTEDGrKVTSNDDPILATGYHPDLSFLK-KGLF 270

                         330
                  ....*....|....*
gi 15240866   312 EVDDDRVGPLFEHTF 326
Cdd:pfam13738 271 ELDEDGRPVLTEETE 285
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
15-316 2.42e-13

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 70.53  E-value: 2.42e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  15 KVCVIGAGPAGLVSARELRKEGHKVVVLEQNEdVGGQWFYQPNVEeeDPLGRssgsingelkvhssiysslrltsPREIM 94
Cdd:COG0492   2 DVVIIGAGPAGLTAAIYAARAGLKTLVIEGGE-PGGQLATTKEIE--NYPGF-----------------------PEGIS 55

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  95 GysdfpflakkgrdmrrfpghKELWLYLKDFSEAFGLRemirfnVRVEFVGEKEEEDDVKKWIVRSREKFSGKvmeeifd 174
Cdd:COG0492  56 G--------------------PELAERLREQAERFGAE------ILLEEVTSVDKDDGPFRVTTDDGTEYEAK------- 102

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 175 AVVVATGhySHPRLPSIKGMDSWKRKQIHSHVyrVPDP--FRNEVVVVVGNSMSGQDISMELVEVAKEVHL--SAKTLDI 250
Cdd:COG0492 103 AVIIATG--AGPRKLGLPGEEEFEGRGVSYCA--TCDGffFRGKDVVVVGGGDSALEEALYLTKFASKVTLihRRDELRA 178

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15240866 251 SSGLSKVISKHPN--LLIHPQIESLEDDGK---VIFVDGSW-----VVADTILYCTGYSYKFPFLESKGrIEVDDD 316
Cdd:COG0492 179 SKILVERLRANPKieVLWNTEVTEIEGDGRvegVTLKNVKTgeekeLEVDGVFVAIGLKPNTELLKGLG-LELDED 253
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
10-50 2.80e-12

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 68.41  E-value: 2.80e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 15240866  10 RSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:COG1231   4 RARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGG 44
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 13-50 2.05e-11

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 65.62  E-value: 2.05e-11
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 15240866  13 SKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:COG1232   1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGG 38
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 14-50 2.58e-10

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 62.07  E-value: 2.58e-10
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15240866  14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:COG0493 122 KKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
18-53 2.93e-10

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 56.00  E-value: 2.93e-10
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 15240866    18 VIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWF 53
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAY 36
PRK07233 PRK07233
hypothetical protein; Provisional
 15-50 9.87e-10

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 60.29  E-value: 9.87e-10
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 15240866   15 KVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK07233   1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 12-50 1.59e-09

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 59.86  E-value: 1.59e-09
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 15240866  12 RSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:COG1233   2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGG 40
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 10-50 2.08e-09

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 59.42  E-value: 2.08e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 15240866   10 RSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 15-220 5.80e-09

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 57.41  E-value: 5.80e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    15 KVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG-----------QWFYQPNVEEEDPLGRSSGSINGELKVHSSIYS 83
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSgasgrnaglihPGLRYLEPSELARLALEALDLWEELEEELGIDC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    84 SLRLTspreimGY------SDFPFLAKKGRDMRRFPGH---------KELWLYLKDFSEAF---------------GLRE 133
Cdd:pfam01266  81 GFRRC------GVlvlardEEEEALEKLLAALRRLGVPaelldaeelRELEPLLPGLRGGLfypdgghvdparllrALAR 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866   134 M-------IRFNVRVEfvgEKEEEDDVkkWIVRSrekfsgkvmEEIFDAVVVATGHYShprlpsikgmDSWKRKQIHSHV 206
Cdd:pfam01266 155 AaealgvrIIEGTEVT---GIEEEGGV--WGVVT---------TGEADAVVNAAGAWA----------DLLALPGLRLPV 210

                         250
                  ....*....|....
gi 15240866   207 YrvpdPFRNEVVVV 220
Cdd:pfam01266 211 R----PVRGQVLVL 220
PRK07208 PRK07208
hypothetical protein; Provisional
 11-50 2.36e-08

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 56.05  E-value: 2.36e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 15240866   11 SRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK07208   2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 8-50 2.43e-08

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 55.94  E-value: 2.43e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 15240866    8 ASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK12810 138 PVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 4-54 4.73e-08

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 55.50  E-value: 4.73e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15240866    4 FTSEASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFY 54
Cdd:PRK12814 184 YIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY 234
PLN02976 PLN02976
amine oxidase
 14-53 1.80e-07

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 53.72  E-value: 1.80e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 15240866    14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWF 53
Cdd:PLN02976  694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVY 733
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 11-49 2.04e-07

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 52.63  E-value: 2.04e-07
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 15240866  11 SRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVG 49
Cdd:COG0654   1 MMRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPR 39
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 2-50 2.96e-07

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 52.57  E-value: 2.96e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 15240866    2 VTFTSEASRSrSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK12771 127 WKFPAPAPDT-GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
12-46 3.40e-07

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 52.21  E-value: 3.40e-07
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15240866  12 RSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNE 46
Cdd:COG0665   1 ATADVVVIGGGIAGLSTAYHLARRGLDVTVLERGR 35
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
12-50 7.85e-07

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 50.65  E-value: 7.85e-07
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 15240866  12 RSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:COG3380   2 SMPDIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGG 40
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
16-53 2.32e-06

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 49.79  E-value: 2.32e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 15240866  16 VCVIGAGPAGLVSARELRKEGHKVVVLEQN--EDVGGQWF 53
Cdd:COG3573   8 VIVVGAGLAGLVAAAELADAGRRVLLLDQEpeANLGGQAF 47
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
18-49 2.64e-06

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 49.28  E-value: 2.64e-06
                        10        20        30
                ....*....|....*....|....*....|..
gi 15240866  18 VIGAGPAGLVSARELRKEGHKVVVLEQNEDVG 49
Cdd:COG2081   2 VIGAGAAGLMAAITAAERGARVLLLEKNPKVG 33
HI0933_like pfam03486
HI0933-like protein;
14-190 3.07e-06

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 49.12  E-value: 3.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDV---------GGQWFYQPNVEEEDPLGRSSGsiNGELkvhssIYSS 84
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLgrkilisggGRCNVTNLSEEPDNFLSRYPG--NPKF-----LKSA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    85 LRLTSPREIMGysdfpFLAKKG------RDMRRFPghkelwlylKDFS-----EAFgLREMIRFNVRVEFvgekeeEDDV 153
Cdd:pfam03486  74 LSRFTPWDFIA-----FFESLGvplkeeDHGRLFP---------DSDKasdivDAL-LNELKELGVKIRL------RTRV 132

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 15240866   154 KKWIVRSREKFSGKVMEEIF--DAVVVATGHYSHPRLPS 190
Cdd:pfam03486 133 LSVEKDDDGRFRVKTGGEELeaDSLVLATGGLSWPKTGS 171
PRK12834 PRK12834
putative FAD-binding dehydrogenase; Reviewed
 16-54 5.01e-06

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 183782 [Multi-domain]  Cd Length: 549  Bit Score: 48.74  E-value: 5.01e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 15240866   16 VCVIGAGPAGLVSARELRKEGHKVVVLEQ-NE-DVGGQWFY 54
Cdd:PRK12834   7 VIVVGAGLAGLVAAAELADAGKRVLLLDQeNEaNLGGQAFW 47
PRK12831 PRK12831
putative oxidoreductase; Provisional
 6-50 7.68e-06

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 48.09  E-value: 7.68e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 15240866    6 SEASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK12831 133 SETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177
TIGR00275 TIGR00275
flavoprotein, HI0933 family; The model when searched with a partial length search brings in ...
 18-190 1.03e-05

flavoprotein, HI0933 family; The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 272992 [Multi-domain]  Cd Length: 400  Bit Score: 47.59  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    18 VIGAGPAGLVSARELRKEGHKVVVLEQNEDVG--------GQWfyqpNVEEEDPLGRSSGSI--NGELkvhssIYSSLRL 87
Cdd:TIGR00275   2 IIGGGAAGLMAAITAARAGLSVLLLEKNKKIGkkllisggGRC----NLTNSCPTPEFVAYYprNGKF-----LRSALSR 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    88 TSPREIMGysdfpFLAKKG------RDMRRFP-GHKElwlylKDFSEAFgLREMIRFNVRVeFVGEKeeeddVKKwIVRS 160
Cdd:TIGR00275  73 FSNKDLID-----FFESLGlelkveEDGRVFPcSDSA-----ADVLDAL-LNELKELGVEI-LTNSK-----VKS-IEKE 134

                         170       180       190
                  ....*....|....*....|....*....|..
gi 15240866   161 REKFSGKVMEEIF--DAVVVATGHYSHPRLPS 190
Cdd:TIGR00275 135 DGGFGVETSGGEYeaDKVIIATGGLSYPQLGS 166
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
21-227 1.33e-05

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 46.88  E-value: 1.33e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  21 AGPAGLVSARELRKEGHKVVVLEQNEDVG----GQWFYQPNVEEEDPLGRSSgSINGELKvhssiysSLRLTSPREimGY 96
Cdd:COG0644   1 AGPAGSAAARRLARAGLSVLLLEKGSFPGdkicGGGLLPRALEELEPLGLDE-PLERPVR-------GARFYSPGG--KS 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  97 SDFPFLAKKGR--DMRRFpghkELWLyLKDFSEAfGLRemIRFNVRVEfvgEKEEEDDvkKWIVRSREkfsgkvMEEI-F 173
Cdd:COG0644  71 VELPPGRGGGYvvDRARF----DRWL-AEQAEEA-GAE--VRTGTRVT---DVLRDDG--RVVVRTGD------GEEIrA 131

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15240866 174 DAVVVATGHYSHprLPSIKGMDSWKRK--------QIHSHVYRVPDPFRNEVVVVVGNSMSG 227
Cdd:COG0644 132 DYVVDADGARSL--LARKLGLKRRSDEpqdyalaiKEHWELPPLEGVDPGAVEFFFGEGAPG 191
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 16-72 2.74e-05

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 46.13  E-value: 2.74e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15240866    16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYqpnveeedplgrSSGSIN 72
Cdd:pfam00890   2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGGATAW------------SSGGID 46
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 12-50 3.06e-05

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 46.00  E-value: 3.06e-05
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 15240866  12 RSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:COG3349   2 MPPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGG 40
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 16-50 3.14e-05

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 46.32  E-value: 3.14e-05
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 15240866   16 VCVIGAGPAGLVSARELRKEGHKVVVLEQnEDVGG 50
Cdd:PRK06292   6 VIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGG 39
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
13-51 3.56e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 46.01  E-value: 3.56e-05
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 15240866  13 SKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQ 51
Cdd:COG1148 140 NKRALVIGGGIAGMTAALELAEQGYEVYLVEKEPELGGR 178
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 16-50 7.57e-05

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 45.08  E-value: 7.57e-05
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15240866  16 VCVIGAGPAGLVSARELRKEGHKVVVLEQnEDVGG 50
Cdd:COG1249   6 LVVIGAGPGGYVAAIRAAQLGLKVALVEK-GRLGG 39
TrkA COG0569
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ...
 12-47 8.21e-05

Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 440335 [Multi-domain]  Cd Length: 296  Bit Score: 44.29  E-value: 8.21e-05
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 15240866  12 RSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNED 47
Cdd:COG0569  94 LKMHVIIIGAGRVGRSLARELEEEGHDVVVIDKDPE 129
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
 14-50 9.08e-05

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 45.12  E-value: 9.08e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 15240866   14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG 468
COG2509 COG2509
FAD-dependent dehydrogenase [General function prediction only];
10-182 9.28e-05

FAD-dependent dehydrogenase [General function prediction only];


Pssm-ID: 441999 [Multi-domain]  Cd Length: 466  Bit Score: 44.72  E-value: 9.28e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  10 RSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDvggqwfyqpnVEEedplgRS----SGSINGELKVHSSI---- 81
Cdd:COG2509  27 PSLKYDVVIVGAGPAGLFAALELAEAGLKPLVLERGKD----------VEE-----RTcpvaEFWRKGKCNPESNIqfge 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  82 -----YS----SLRLTSPREIMGYSDFPFLakkgrdmrRFPGHKELwLY-----------------LKDFSEAFGLRemI 135
Cdd:COG2509  92 ggagtFSdgklNTRSKDPQGLIRYVLEIFV--------KFGAPEEI-LYaakphigtdklpkvvknIREYIEELGGE--I 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
gi 15240866 136 RFNVRVEFVgeKEEEDDVKKWIVRSREKFSGkvmeeifDAVVVATGH 182
Cdd:COG2509 161 RFNTRVTDI--LIEDGRVKGVVTNDGEEIEA-------DAVILAPGH 198
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 15-47 1.45e-04

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 43.85  E-value: 1.45e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15240866    15 KVCVIGAGPAGLVSARELRKEGHKVVVLEQNED 47
Cdd:pfam01494   3 DVLIVGGGPAGLMLALLLARAGVRVVLVERHAT 35
PRK06185 PRK06185
FAD-dependent oxidoreductase;
16-47 1.49e-04

FAD-dependent oxidoreductase;


Pssm-ID: 235729 [Multi-domain]  Cd Length: 407  Bit Score: 44.08  E-value: 1.49e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 15240866   16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNED 47
Cdd:PRK06185   9 CCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40
PLN03000 PLN03000
amine oxidase
 4-51 2.58e-04

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 43.47  E-value: 2.58e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 15240866    4 FTSEASRSrskKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQ 51
Cdd:PLN03000 178 FPAQSSKS---SVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222
PLN02268 PLN02268
probable polyamine oxidase
 16-50 2.82e-04

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 43.14  E-value: 2.82e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 15240866   16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PLN02268   3 VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
 16-51 3.12e-04

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 43.44  E-value: 3.12e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 15240866   16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQ 51
Cdd:PLN02328 241 VVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276
Ppro0129 COG2907
Predicted flavin-containing amine oxidase [General function prediction only];
12-50 4.57e-04

Predicted flavin-containing amine oxidase [General function prediction only];


Pssm-ID: 442151 [Multi-domain]  Cd Length: 423  Bit Score: 42.41  E-value: 4.57e-04
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 15240866  12 RSKKVCVIGAGPAGLVSARELRKEgHKVVVLEQNEDVGG 50
Cdd:COG2907   2 ARMRIAVIGSGISGLTAAWLLSRR-HDVTLFEANDRLGG 39
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
 6-41 4.98e-04

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 42.28  E-value: 4.98e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 15240866    6 SEASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVV 41
Cdd:PRK12770  11 KEKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHV 46
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
16-49 5.02e-04

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 42.44  E-value: 5.02e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15240866  16 VCVIGAGPAGLVSAREL-RKEGHKVVVLEQNEDVG 49
Cdd:COG0579   7 VVIIGAGIVGLALARELsRYEDLKVLVLEKEDDVA 41
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 14-50 5.71e-04

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 42.14  E-value: 5.71e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15240866   14 KKVCVIGAGPAGLVSARELRKEG--HKVVVLEQNEDVGG 50
Cdd:PRK11883   1 KKVAIIGGGITGLSAAYRLHKKGpdADITLLEASDRLGG 39
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 16-50 6.75e-04

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 41.74  E-value: 6.75e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15240866  16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:COG1053   6 VVVVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGG 40
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
14-326 9.40e-04

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 41.27  E-value: 9.40e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  14 KKVCVIGAGPAGLVSARELRKE---GHKVVVLEQNEdvggQWFYQPNVeeedplgrsSGSINGELkvhssiysslrltSP 90
Cdd:COG1252   2 KRIVIVGGGFAGLEAARRLRKKlggDAEVTLIDPNP----YHLFQPLL---------PEVAAGTL-------------SP 55

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866  91 REImgysdfpflakkgrdmrrfpghkelwlylkdfseAFGLREMIRFNvRVEFV-GEKEEEDDVKKWI-VRSREKFSgkv 168
Cdd:COG1252  56 DDI----------------------------------AIPLRELLRRA-GVRFIqGEVTGIDPEARTVtLADGRTLS--- 97

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 169 meeiFDAVVVATGhySHPRLPSIKGMDSwkrkqiHSH-VYRVPD--PFRNEV--------------VVVVGNSMSGQDIS 231
Cdd:COG1252  98 ----YDYLVIATG--SVTNFFGIPGLAE------HALpLKTLEDalALRERLlaaferaerrrlltIVVVGGGPTGVELA 165

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 232 MELVEVAKEVhlsAKTLDISSGLSKVIskhpnlLIH--PQI-------------ESLE---------------DDGKVIF 281
Cdd:COG1252 166 GELAELLRKL---LRYPGIDPDKVRIT------LVEagPRIlpglgeklseaaeKELEkrgvevhtgtrvtevDADGVTL 236

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|..
gi 15240866 282 VDGSWVVADTILYCTGYS-----YKFPF-LESKGRIEVDDD-RVgPLFEHTF 326
Cdd:COG1252 237 EDGEEIPADTVIWAAGVKappllADLGLpTDRRGRVLVDPTlQV-PGHPNVF 287
PLN02487 PLN02487
zeta-carotene desaturase
 7-51 1.14e-03

zeta-carotene desaturase


Pssm-ID: 215268 [Multi-domain]  Cd Length: 569  Bit Score: 41.32  E-value: 1.14e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 15240866    7 EASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQ 51
Cdd:PLN02487  69 EAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGK 113
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 118-297 1.35e-03

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 40.56  E-value: 1.35e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 118 LWLYL----KDFSEAFG--LREMIRFNVRVEFVGEKEEEDDVKKWI-VRSREKFSgkvmeeiFDAVVVATGhySHPRLPS 190
Cdd:COG0446  24 LPYYVgggiKDPEDLLVrtPESFERKGIDVRTGTEVTAIDPEAKTVtLRDGETLS-------YDKLVLATG--ARPRPPP 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866 191 IKGMD-----SWKRKQIHSHVYRVPDPFRNEVVVVVGnsmSGQdISMELVEVA----KEVHL--SAKTL------DISSG 253
Cdd:COG0446  95 IPGLDlpgvfTLRTLDDADALREALKEFKGKRAVVIG---GGP-IGLELAEALrkrgLKVTLveRAPRLlgvldpEMAAL 170

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
gi 15240866 254 LSKVISKHP-NLLIHPQIESLEDDGK--VIFVDGSWVVADTILYCTG 297
Cdd:COG0446 171 LEEELREHGvELRLGETVVAIDGDDKvaVTLTDGEEIPADLVVVAPG 217
PRK13984 PRK13984
putative oxidoreductase; Provisional
 12-54 1.54e-03

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 40.91  E-value: 1.54e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 15240866   12 RSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFY 54
Cdd:PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY 324
Thi4 pfam01946
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
 16-50 1.78e-03

Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.


Pssm-ID: 460393  Cd Length: 232  Bit Score: 39.76  E-value: 1.78e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 15240866    16 VCVIGAGPAGLVSAREL-RKEGHKVVVLEQNEDVGG 50
Cdd:pfam01946  20 VVIVGAGSSGLTAAYYLaKNRGLKVAIIERSVSPGG 55
PRK09126 PRK09126
FAD-dependent hydroxylase;
16-44 2.35e-03

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 39.92  E-value: 2.35e-03
                         10        20
                 ....*....|....*....|....*....
gi 15240866   16 VCVIGAGPAGLVSARELRKEGHKVVVLEQ 44
Cdd:PRK09126   6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34
PLN02529 PLN02529
lysine-specific histone demethylase 1
 14-55 2.91e-03

lysine-specific histone demethylase 1


Pssm-ID: 178144 [Multi-domain]  Cd Length: 738  Bit Score: 40.26  E-value: 2.91e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 15240866   14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQ 55
Cdd:PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQ 202
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
 14-50 3.06e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 40.12  E-value: 3.06e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 15240866   14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
16-48 3.25e-03

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 39.89  E-value: 3.25e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 15240866   16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDV 48
Cdd:PRK06183  13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
18-50 3.70e-03

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 39.75  E-value: 3.70e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 15240866   18 VIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK05249  10 VIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG 42
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 12-50 3.73e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 39.62  E-value: 3.73e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15240866   12 RSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG 347
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 14-48 4.11e-03

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 39.02  E-value: 4.11e-03
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15240866  14 KKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDV 48
Cdd:COG0446 125 KRAVVIGGGPIGLELAEALRKRGLKVTLVERAPRL 159
PRK06370 PRK06370
FAD-containing oxidoreductase;
18-50 4.19e-03

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 39.42  E-value: 4.19e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 15240866   18 VIGAGPAGLVSARELRKEGHKVVVLEQNeDVGG 50
Cdd:PRK06370  10 VIGAGQAGPPLAARAAGLGMKVALIERG-LLGG 41
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 16-43 4.36e-03

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 39.43  E-value: 4.36e-03
                        10        20
                ....*....|....*....|....*....
gi 15240866  16 VCVIGAGPAGLVSAREL-RKEGHKVVVLE 43
Cdd:COG2303   7 YVIVGAGSAGCVLANRLsEDAGLRVLLLE 35
PRK08243 PRK08243
4-hydroxybenzoate 3-monooxygenase; Validated
 15-44 4.92e-03

4-hydroxybenzoate 3-monooxygenase; Validated


Pssm-ID: 236198 [Multi-domain]  Cd Length: 392  Bit Score: 39.01  E-value: 4.92e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 15240866   15 KVCVIGAGPAGLVSARELRKEGHKVVVLEQ 44
Cdd:PRK08243   4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33
PRK12779 PRK12779
putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; ...
 16-50 5.02e-03

putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional


Pssm-ID: 183740 [Multi-domain]  Cd Length: 944  Bit Score: 39.43  E-value: 5.02e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 15240866   16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGG 50
Cdd:PRK12779 309 IAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG 343
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 16-216 5.87e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 38.45  E-value: 5.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    16 VCVIGAGPAGLVSARELRKEGHKVVVLEQNEDV-----GGqwFYQPNVEEEDPLGRSSGSingELKVHSSIYSslrltsp 90
Cdd:TIGR02032   3 VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPrykpcGG--ALSPRALEELDLPGELIV---NLVRGARFFS------- 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240866    91 reimgysdfPFLAKKGRDMRRFPGH----KELWLYLkdFSEAFGLREMIRFNVRVEFVgekEEEDDVKKWIVR-SREKFS 165
Cdd:TIGR02032  71 ---------PNGDSVEIPIETELAYvidrDAFDEQL--AERAQEAGAELRLGTRVLDV---EIHDDRVVVIVRgSEGTVT 136

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15240866   166 GKVmeeifdaVVVATGHYShpRLPsiKGMDSWKRKQIHSHVYRVPDPFRNE 216
Cdd:TIGR02032 137 AKI-------VIGADGSRS--IVA--KKLGLKKEPREYGVAARAEVEMPDE 176
lipoamide_DH TIGR01350
dihydrolipoamide dehydrogenase; This model describes dihydrolipoamide dehydrogenase, a ...
 16-50 5.89e-03

dihydrolipoamide dehydrogenase; This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.


Pssm-ID: 273568 [Multi-domain]  Cd Length: 460  Bit Score: 38.78  E-value: 5.89e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15240866    16 VCVIGAGPAGLVSARELRKEGHKVVVLEQnEDVGG 50
Cdd:TIGR01350   4 VIVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGG 37
PRK00711 PRK00711
D-amino acid dehydrogenase;
15-43 6.03e-03

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 39.01  E-value: 6.03e-03
                         10        20
                 ....*....|....*....|....*....
gi 15240866   15 KVCVIGAGPAGLVSARELRKEGHKVVVLE 43
Cdd:PRK00711   2 RVVVLGSGVIGVTSAWYLAQAGHEVTVID 30
PRK06753 PRK06753
hypothetical protein; Provisional
 15-48 7.62e-03

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 38.52  E-value: 7.62e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 15240866   15 KVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDV 48
Cdd:PRK06753   2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35
TrkA_N pfam02254
TrkA-N domain; This domain is found in a wide variety of proteins. These proteins include ...
 16-48 8.16e-03

TrkA-N domain; This domain is found in a wide variety of proteins. These proteins include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.


Pssm-ID: 426679 [Multi-domain]  Cd Length: 115  Bit Score: 36.35  E-value: 8.16e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15240866    16 VCVIGAGPAGLVSARELRkEGHKVVVLEQNEDV 48
Cdd:pfam02254   1 IIIIGYGRVGRSLAEELS-EGGDVVVIDKDEER 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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