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Conserved domains on  [gi|15241781|ref|NP_195856|]
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DC1 domain-containing protein [Arabidopsis thaliana]

Protein Classification

DC1 domain-containing protein( domain architecture ID 10503954)

DC1 (divergent C1) domain-containing protein similar to Capsicum annuum cysteine/histidine-rich DC1 domain protein CaDC1 that binds both RNA and DNA and is required for plant cell death and defense response

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 118-166 5.96e-11

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 57.00  E-value: 5.96e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15241781   118 SRHHHRISYTSSLPSGKWSCGVCRQMVDNDYGAYSCNKCdDYFVHSRCA 166
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSEC-DFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 202-250 2.35e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 52.38  E-value: 2.35e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15241781   202 FSHGHHLKLkISRVYDEKKVCQACILPI-YEGSYYSCMdECDFILHEACA 250
Cdd:pfam03107   1 PSHPHPLTL-TGSPRDGSFTCDACGLKIdGFFGFYSCS-ECDFVLHERCA 48
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 118-166 5.96e-11

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 57.00  E-value: 5.96e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15241781   118 SRHHHRISYTSSLPSGKWSCGVCRQMVDNDYGAYSCNKCdDYFVHSRCA 166
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSEC-DFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 202-250 2.35e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 52.38  E-value: 2.35e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15241781   202 FSHGHHLKLkISRVYDEKKVCQACILPI-YEGSYYSCMdECDFILHEACA 250
Cdd:pfam03107   1 PSHPHPLTL-TGSPRDGSFTCDACGLKIdGFFGFYSCS-ECDFVLHERCA 48
Ubl2_ANKUB1 cd17051
ubiquitin-like (Ubl) domain 2 found in Ankyrin repeat and ubiquitin domain-containing 1 ...
 151-174 5.65e-03

ubiquitin-like (Ubl) domain 2 found in Ankyrin repeat and ubiquitin domain-containing 1 (ANKUB1) and similar proteins; ANKUB1 is an uncharacterized protein with two tandem ubiquitin-like (Ubl) domains located at the N-terminal of Ankyrin repeats (ANK). The Ubl domain may have an adaptor role in ubiquitin(Ub)-signaling by mediating protein-protein interaction. Ubl proteins have a beta-grasp Ubl fold and attach to other proteins in a Ubl manner with biochemically distinct roles. The ankyrin repeats have been identified in numerous proteins with diverse functions. The family corresponds to the second Ubl domain.


Pssm-ID: 340571  Cd Length: 83  Bit Score: 35.32  E-value: 5.65e-03
                        10        20
                ....*....|....*....|....
gi 15241781 151 YSCNKCDDYFVHSRCALRSDLWDG 174
Cdd:cd17051  59 YDCNLLDDYGIDIGTTLRLETWDG 82
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 118-166 5.96e-11

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 57.00  E-value: 5.96e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15241781   118 SRHHHRISYTSSLPSGKWSCGVCRQMVDNDYGAYSCNKCdDYFVHSRCA 166
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSEC-DFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 202-250 2.35e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 52.38  E-value: 2.35e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15241781   202 FSHGHHLKLkISRVYDEKKVCQACILPI-YEGSYYSCMdECDFILHEACA 250
Cdd:pfam03107   1 PSHPHPLTL-TGSPRDGSFTCDACGLKIdGFFGFYSCS-ECDFVLHERCA 48
Ubl2_ANKUB1 cd17051
ubiquitin-like (Ubl) domain 2 found in Ankyrin repeat and ubiquitin domain-containing 1 ...
 151-174 5.65e-03

ubiquitin-like (Ubl) domain 2 found in Ankyrin repeat and ubiquitin domain-containing 1 (ANKUB1) and similar proteins; ANKUB1 is an uncharacterized protein with two tandem ubiquitin-like (Ubl) domains located at the N-terminal of Ankyrin repeats (ANK). The Ubl domain may have an adaptor role in ubiquitin(Ub)-signaling by mediating protein-protein interaction. Ubl proteins have a beta-grasp Ubl fold and attach to other proteins in a Ubl manner with biochemically distinct roles. The ankyrin repeats have been identified in numerous proteins with diverse functions. The family corresponds to the second Ubl domain.


Pssm-ID: 340571  Cd Length: 83  Bit Score: 35.32  E-value: 5.65e-03
                        10        20
                ....*....|....*....|....
gi 15241781 151 YSCNKCDDYFVHSRCALRSDLWDG 174
Cdd:cd17051  59 YDCNLLDDYGIDIGTTLRLETWDG 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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