NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15241667|ref|NP_195823|]
View 

POX (plant homeobox) family protein [Arabidopsis thaliana]

Protein Classification

POX and homeodomain domain-containing protein( domain architecture ID 11273480)

POX and homeodomain domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
POX smart00574
domain associated with HOX domains;
165-292 5.41e-50

domain associated with HOX domains;


:

Pssm-ID: 214728  Cd Length: 140  Bit Score: 169.09  E-value: 5.41e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241667    165 TGYASILKGSRFLKPAQMLLDEFCNVGRGIYTDKVIDDDDSSLLFDPT---VENLCGVSDGGGGDNGKKKSK-------- 233
Cdd:smart00574   1 TGGVFILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSPVSTSSNeggGENLSGGSSSSEVPPLSTAERqelqrkka 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241667    234 -LISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAITD 292
Cdd:smart00574  81 kLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIAG 140
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 367-405 2.54e-19

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


:

Pssm-ID: 428673  Cd Length: 39  Bit Score: 81.02  E-value: 2.54e-19
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15241667   367 LFDHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 405
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
 
Name Accession Description Interval E-value
POX smart00574
domain associated with HOX domains;
165-292 5.41e-50

domain associated with HOX domains;


Pssm-ID: 214728  Cd Length: 140  Bit Score: 169.09  E-value: 5.41e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241667    165 TGYASILKGSRFLKPAQMLLDEFCNVGRGIYTDKVIDDDDSSLLFDPT---VENLCGVSDGGGGDNGKKKSK-------- 233
Cdd:smart00574   1 TGGVFILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSPVSTSSNeggGENLSGGSSSSEVPPLSTAERqelqrkka 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241667    234 -LISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAITD 292
Cdd:smart00574  81 kLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIAG 140
POX pfam07526
Associated with HOX; The function of this domain is unknown. It is often found in plant ...
 170-291 3.48e-38

Associated with HOX; The function of this domain is unknown. It is often found in plant proteins associated with pfam00046.


Pssm-ID: 429514  Cd Length: 139  Bit Score: 137.39  E-value: 3.48e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241667   170 ILKGSRFLKPAQMLLDEFCNVGRGIYTDKVIDDDDSSLLFDPTVENLCGVSDGGGGDNGKKKSK---------------- 233
Cdd:pfam07526   1 VLLRSRYLKPAQELLDEVVSVGGKSIASKSSSSSVSKKEDSEDGGSSQSGGGEGGGGSSSGGGSpslssaerqelqrkka 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15241667   234 -LISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAIT 291
Cdd:pfam07526  81 kLLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAKPYTALALRTISRHFRCLRDAIS 139
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 367-405 2.54e-19

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 81.02  E-value: 2.54e-19
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15241667   367 LFDHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 405
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 349-410 2.49e-11

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 59.18  E-value: 2.49e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15241667 349 WRPHRGLPERAVTVLRAWlFDHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWKPM 410
Cdd:cd00086   1 RRKRTRFTPEQLEELEKE-FEK--NPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 350-408 8.77e-10

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 54.56  E-value: 8.77e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 15241667    350 RPHRGLPERAVTVLRAWlFDHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRvWK 408
Cdd:smart00389   3 RKRTSFTPEQLEELEKE-FQK--NPYPSREEREELAKKLGLSERQVKVWFQNRRAK-WK 57
 
Name Accession Description Interval E-value
POX smart00574
domain associated with HOX domains;
165-292 5.41e-50

domain associated with HOX domains;


Pssm-ID: 214728  Cd Length: 140  Bit Score: 169.09  E-value: 5.41e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241667    165 TGYASILKGSRFLKPAQMLLDEFCNVGRGIYTDKVIDDDDSSLLFDPT---VENLCGVSDGGGGDNGKKKSK-------- 233
Cdd:smart00574   1 TGGVFILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSPVSTSSNeggGENLSGGSSSSEVPPLSTAERqelqrkka 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241667    234 -LISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAITD 292
Cdd:smart00574  81 kLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIAG 140
POX pfam07526
Associated with HOX; The function of this domain is unknown. It is often found in plant ...
 170-291 3.48e-38

Associated with HOX; The function of this domain is unknown. It is often found in plant proteins associated with pfam00046.


Pssm-ID: 429514  Cd Length: 139  Bit Score: 137.39  E-value: 3.48e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241667   170 ILKGSRFLKPAQMLLDEFCNVGRGIYTDKVIDDDDSSLLFDPTVENLCGVSDGGGGDNGKKKSK---------------- 233
Cdd:pfam07526   1 VLLRSRYLKPAQELLDEVVSVGGKSIASKSSSSSVSKKEDSEDGGSSQSGGGEGGGGSSSGGGSpslssaerqelqrkka 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15241667   234 -LISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAIT 291
Cdd:pfam07526  81 kLLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAKPYTALALRTISRHFRCLRDAIS 139
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 367-405 2.54e-19

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 81.02  E-value: 2.54e-19
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15241667   367 LFDHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 405
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 349-410 2.49e-11

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 59.18  E-value: 2.49e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15241667 349 WRPHRGLPERAVTVLRAWlFDHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWKPM 410
Cdd:cd00086   1 RRKRTRFTPEQLEELEKE-FEK--NPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 350-408 8.77e-10

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 54.56  E-value: 8.77e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 15241667    350 RPHRGLPERAVTVLRAWlFDHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRvWK 408
Cdd:smart00389   3 RKRTSFTPEQLEELEKE-FQK--NPYPSREEREELAKKLGLSERQVKVWFQNRRAK-WK 57
Homeodomain pfam00046
Homeodomain;
373-408 8.66e-06

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 43.26  E-value: 8.66e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 15241667   373 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRvWK 408
Cdd:pfam00046  22 NPYPSAEEREELAAQLGLTERQVKVWFQNRRAK-WK 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH