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Conserved domains on  [gi|334187144|ref|NP_195133|]
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Calcium-binding EF-hand family protein [Arabidopsis thaliana]

Protein Classification

TLD domain-containing protein( domain architecture ID 4815)

TLD domain-containing protein similar to Candida albicans oxidation resistance protein 1 (OXR1) and Pan troglodytes interferon-induced protein 44 (IFI44)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TLD super family cl02144
TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It ...
 261-312 2.96e-11

TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices.


The actual alignment was detected with superfamily member smart00584:

Pssm-ID: 445683  Cd Length: 165  Bit Score: 60.80  E-value: 2.96e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 334187144   261 RLLLKKEYAWHIGGALP-HHELVEWKLLYRSSLHGQSFNTFLGHTSGMEGSNM 312
Cdd:smart00584   1 SSILSEEILALINSHLPtRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTL 53
 
Name Accession Description Interval E-value
TLDc smart00584
domain in TBC and LysM domain containing proteins;
261-312 2.96e-11

domain in TBC and LysM domain containing proteins;


Pssm-ID: 214733  Cd Length: 165  Bit Score: 60.80  E-value: 2.96e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 334187144   261 RLLLKKEYAWHIGGALP-HHELVEWKLLYRSSLHGQSFNTFLGHTSGMEGSNM 312
Cdd:smart00584   1 SSILSEEILALINSHLPtRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTL 53
 
Name Accession Description Interval E-value
TLDc smart00584
domain in TBC and LysM domain containing proteins;
261-312 2.96e-11

domain in TBC and LysM domain containing proteins;


Pssm-ID: 214733  Cd Length: 165  Bit Score: 60.80  E-value: 2.96e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 334187144   261 RLLLKKEYAWHIGGALP-HHELVEWKLLYRSSLHGQSFNTFLGHTSGMEGSNM 312
Cdd:smart00584   1 SSILSEEILALINSHLPtRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTL 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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