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Conserved domains on  [gi|186512232|ref|NP_193928|]
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senescence regulator (Protein of unknown function, DUF584) [Arabidopsis thaliana]

Protein Classification

senescence regulator domain-containing protein( domain architecture ID 10517582)

senescence regulator domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Senescence_reg pfam04520
Senescence regulator; This protein regulates the expression of proteins associated with leaf ...
 52-145 3.71e-46

Senescence regulator; This protein regulates the expression of proteins associated with leaf senescence in plants.


:

Pssm-ID: 461341  Cd Length: 171  Bit Score: 148.39  E-value: 3.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186512232   52 VSGGAKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDDDEGS-MVPPHELVAKRLArtQISSFSMCEGIGRTLKGRDL 130
Cdd:pfam04520  79 SGGPRDAQSAPVNVPDWSKILGASSSRRSRHDDDDGDDDEDDGAeMVPPHEYVARRRA--QMASFSVLEGAGRTLKGRDL 156

                          90
                  ....*....|....*
gi 186512232  131 SKTRNAVLTRTGFLE 145
Cdd:pfam04520 157 RRVRNAVLRQTGFLD 171
 
Name Accession Description Interval E-value
Senescence_reg pfam04520
Senescence regulator; This protein regulates the expression of proteins associated with leaf ...
 52-145 3.71e-46

Senescence regulator; This protein regulates the expression of proteins associated with leaf senescence in plants.


Pssm-ID: 461341  Cd Length: 171  Bit Score: 148.39  E-value: 3.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186512232   52 VSGGAKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDDDEGS-MVPPHELVAKRLArtQISSFSMCEGIGRTLKGRDL 130
Cdd:pfam04520  79 SGGPRDAQSAPVNVPDWSKILGASSSRRSRHDDDDGDDDEDDGAeMVPPHEYVARRRA--QMASFSVLEGAGRTLKGRDL 156

                          90
                  ....*....|....*
gi 186512232  131 SKTRNAVLTRTGFLE 145
Cdd:pfam04520 157 RRVRNAVLRQTGFLD 171
 
Name Accession Description Interval E-value
Senescence_reg pfam04520
Senescence regulator; This protein regulates the expression of proteins associated with leaf ...
 52-145 3.71e-46

Senescence regulator; This protein regulates the expression of proteins associated with leaf senescence in plants.


Pssm-ID: 461341  Cd Length: 171  Bit Score: 148.39  E-value: 3.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186512232   52 VSGGAKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDDDEGS-MVPPHELVAKRLArtQISSFSMCEGIGRTLKGRDL 130
Cdd:pfam04520  79 SGGPRDAQSAPVNVPDWSKILGASSSRRSRHDDDDGDDDEDDGAeMVPPHEYVARRRA--QMASFSVLEGAGRTLKGRDL 156

                          90
                  ....*....|....*
gi 186512232  131 SKTRNAVLTRTGFLE 145
Cdd:pfam04520 157 RRVRNAVLRQTGFLD 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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