NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|240256003|ref|NP_193602|]
View 

Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 93-361 1.89e-31

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 132.66  E-value: 1.89e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003  93 LSDPNNFTTNWIGS-DVCSYTGVYCApalDNRRI-------RTVAG--------------IDLNHADIAGYLPQELGLLT 150
Cdd:PLN00113  41 INDPLKYLSNWNSSaDVCLWQGITCN---NSSRVvsidlsgKNISGkissaifrlpyiqtINLSNNQLSGPIPDDIFTTS 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 151 -DLALFHINSNRFCGTVPHRFnrLKLLFELDLSNNRFAG-------IF-----------------PTVVLQLPSLKFLDL 205
Cdd:PLN00113 118 sSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGeipndigSFsslkvldlggnvlvgkiPNSLTNLTSLEFLTL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 206 RFNEFEGPVPRELFS-KDLDAIFINHNRFRFELPDNLGD-SPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSC 283
Cdd:PLN00113 196 ASNQLVGQIPRELGQmKSLKWIYLGYNNLSGEIPYEIGGlTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256003 284 LPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLG 361
Cdd:PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353
Extensin_2 super family cl25884
Extensin-like region;
815-856 1.32e-03

Extensin-like region;


The actual alignment was detected with superfamily member pfam04554:

Pssm-ID: 252669 [Multi-domain]  Cd Length: 57  Bit Score: 37.82  E-value: 1.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 240256003  815 VHYSPPPPPVIHHSqpppppiyegPLPPIPGISYASPPPPPF 856
Cdd:pfam04554  10 VKQYSPPPPYYYKS----------PPPPVKSPVYKSPPPPVY 41
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 93-361 1.89e-31

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 132.66  E-value: 1.89e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003  93 LSDPNNFTTNWIGS-DVCSYTGVYCApalDNRRI-------RTVAG--------------IDLNHADIAGYLPQELGLLT 150
Cdd:PLN00113  41 INDPLKYLSNWNSSaDVCLWQGITCN---NSSRVvsidlsgKNISGkissaifrlpyiqtINLSNNQLSGPIPDDIFTTS 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 151 -DLALFHINSNRFCGTVPHRFnrLKLLFELDLSNNRFAG-------IF-----------------PTVVLQLPSLKFLDL 205
Cdd:PLN00113 118 sSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGeipndigSFsslkvldlggnvlvgkiPNSLTNLTSLEFLTL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 206 RFNEFEGPVPRELFS-KDLDAIFINHNRFRFELPDNLGD-SPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSC 283
Cdd:PLN00113 196 ASNQLVGQIPRELGQmKSLKWIYLGYNNLSGEIPYEIGGlTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256003 284 LPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLG 361
Cdd:PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
144-357 1.03e-20

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 95.77  E-value: 1.03e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 144 QELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFagifptvVLQLPSLKFLDLRFNEFEGpVPRELFS-KD 222
Cdd:COG4886   66 LLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQLTD-LPEELANlTN 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 223 LDAIFINHNRFRfELPDNLGDSP-VSVIVVANNHFHGcIPTSLGDMRNLEEIIFMENGFNScLPSQIGRLKNVTVFDFSF 301
Cdd:COG4886  138 LKELDLSNNQLT-DLPEPLGNLTnLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSG 214

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 240256003 302 NELvGSLPASIGGMVSMEQLNVAHNRFSgKIPAtICQLPRLENFTFSYNFFTGEPP 357
Cdd:COG4886  215 NQL-TDLPEPLANLTNLETLDLSNNQLT-DLPE-LGNLTNLEELDLSNNQLTDLPP 267
LRR_8 pfam13855
Leucine rich repeat;
152-210 5.28e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 5.28e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 240256003  152 LALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEF 210
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
Extensin_2 pfam04554
Extensin-like region;
815-856 1.32e-03

Extensin-like region;


Pssm-ID: 252669 [Multi-domain]  Cd Length: 57  Bit Score: 37.82  E-value: 1.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 240256003  815 VHYSPPPPPVIHHSqpppppiyegPLPPIPGISYASPPPPPF 856
Cdd:pfam04554  10 VKQYSPPPPYYYKS----------PPPPVKSPVYKSPPPPVY 41
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 93-361 1.89e-31

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 132.66  E-value: 1.89e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003  93 LSDPNNFTTNWIGS-DVCSYTGVYCApalDNRRI-------RTVAG--------------IDLNHADIAGYLPQELGLLT 150
Cdd:PLN00113  41 INDPLKYLSNWNSSaDVCLWQGITCN---NSSRVvsidlsgKNISGkissaifrlpyiqtINLSNNQLSGPIPDDIFTTS 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 151 -DLALFHINSNRFCGTVPHRFnrLKLLFELDLSNNRFAG-------IF-----------------PTVVLQLPSLKFLDL 205
Cdd:PLN00113 118 sSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGeipndigSFsslkvldlggnvlvgkiPNSLTNLTSLEFLTL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 206 RFNEFEGPVPRELFS-KDLDAIFINHNRFRFELPDNLGD-SPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSC 283
Cdd:PLN00113 196 ASNQLVGQIPRELGQmKSLKWIYLGYNNLSGEIPYEIGGlTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256003 284 LPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLG 361
Cdd:PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 140-335 3.46e-25

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 112.63  E-value: 3.46e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 140 GYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELF 219
Cdd:PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 220 SKDLDAIFINHNRFRFELPDNLGD-SPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSCLPSQIGRLKNVTVFD 298
Cdd:PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSlSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 240256003 299 FSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPAT 335
Cdd:PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 131-361 2.25e-21

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 100.31  E-value: 2.25e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 131 IDLNHADIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEF 210
Cdd:PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 211 EGPVPRELFS-KDLDAIFINHNRFRFELPDNL-GDSPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSCLPSQI 288
Cdd:PLN00113 249 TGPIPSSLGNlKNLQYLFLYQNKLSGPIPPSIfSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240256003 289 GRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLG 361
Cdd:PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 131-361 8.29e-21

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 98.38  E-value: 8.29e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 131 IDLNHADI-----AGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDL 205
Cdd:PLN00113 236 TSLNHLDLvynnlTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 206 RFNEFEGPVPRELFS-KDLDAIFINHNRFRFELPDNLGDS-----------------PVSV--------IVVANNHFHGC 259
Cdd:PLN00113 316 FSNNFTGKIPVALTSlPRLQVLQLWSNKFSGEIPKNLGKHnnltvldlstnnltgeiPEGLcssgnlfkLILFSNSLEGE 395

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 260 IPTSLGDMRNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVA--------------- 324
Cdd:PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLArnkffgglpdsfgsk 475

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 325 --------------------------------------------------------HNRFSGKIPATICQLPRLENFTFS 348
Cdd:PLN00113 476 rlenldlsrnqfsgavprklgslselmqlklsenklsgeipdelssckklvsldlsHNQLSGQIPASFSEMPVLSQLDLS 555

                        330
                 ....*....|...
gi 240256003 349 YNFFTGEPPVCLG 361
Cdd:PLN00113 556 QNQLSGEIPKNLG 568
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
144-357 1.03e-20

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 95.77  E-value: 1.03e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 144 QELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFagifptvVLQLPSLKFLDLRFNEFEGpVPRELFS-KD 222
Cdd:COG4886   66 LLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQLTD-LPEELANlTN 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 223 LDAIFINHNRFRfELPDNLGDSP-VSVIVVANNHFHGcIPTSLGDMRNLEEIIFMENGFNScLPSQIGRLKNVTVFDFSF 301
Cdd:COG4886  138 LKELDLSNNQLT-DLPEPLGNLTnLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSG 214

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 240256003 302 NELvGSLPASIGGMVSMEQLNVAHNRFSgKIPAtICQLPRLENFTFSYNFFTGEPP 357
Cdd:COG4886  215 NQL-TDLPEPLANLTNLETLDLSNNQLT-DLPE-LGNLTNLEELDLSNNQLTDLPP 267
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 125-361 1.23e-20

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 98.00  E-value: 1.23e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 125 IRTVAGIDLNHADIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLD 204
Cdd:PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 205 LRFNEFEGpvprelfskdldaifinhnrfrfELPDNLGDS-PVSVIVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSC 283
Cdd:PLN00113 363 LSTNNLTG-----------------------EIPEGLCSSgNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240256003 284 LPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATIcQLPRLENFTFSYNFFTGEPPVCLG 361
Cdd:PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG 496
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
142-354 1.24e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 83.06  E-value: 1.24e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 142 LPQELGLLTDLALFHINSNRFcGTVPHRFNRLKLLFELDLSNNRFAGIfPTVVLQLPSLKFLDLRFNEFEGpvprelfsk 221
Cdd:COG4886  128 LPEELANLTNLKELDLSNNQL-TDLPEPLGNLTNLKSLDLSNNQLTDL-PEELGNLTNLKELDLSNNQITD--------- 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 222 dldaifinhnrfrfelpdnlgdspvsvivvannhfhgcIPTSLGDMRNLEEIIFMENGFNScLPSQIGRLKNVTVFDFSF 301
Cdd:COG4886  197 --------------------------------------LPEPLGNLTNLEELDLSGNQLTD-LPEPLANLTNLETLDLSN 237

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 240256003 302 NELVgSLPaSIGGMVSMEQLNVAHNRFSGkIPaTICQLPRLENFTFSYNFFTG 354
Cdd:COG4886  238 NQLT-DLP-ELGNLTNLEELDLSNNQLTD-LP-PLANLTNLKTLDLSNNQLTD 286
PLN03150 PLN03150
hypothetical protein; Provisional
 253-402 1.77e-12

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 71.00  E-value: 1.77e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 253 NNHFHGCIPTSLGDMRNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKI 332
Cdd:PLN03150 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256003 333 PATICQLPrLENFTFSynfFTGEPPVClGLPGFddrRNCLPARPAQR----SPGQCAAFSSLppVDCGSFGCGR 402
Cdd:PLN03150 507 PAALGGRL-LHRASFN---FTDNAGLC-GIPGL---RACGPHLSVGAkigiAFGVSVAFLFL--VICAMCWWKR 570
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 121-263 3.17e-11

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 67.18  E-value: 3.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 121 DNRRIRTVAGIDLNHADIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSL 200
Cdd:PLN00113 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240256003 201 KFLDLRFNEFEGpvprelfskdldaifinhnrfrfELPDNLGDSPVSVIV-VANNHFHGCIPTS 263
Cdd:PLN00113 550 SQLDLSQNQLSG-----------------------EIPKNLGNVESLVQVnISHNHLHGSLPST 590
PLN03150 PLN03150
hypothetical protein; Provisional
 74-242 5.10e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 59.83  E-value: 5.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003  74 ENPRLRNAYIALQAWKQAiLSDPNNFttNWIGsDVCS-----YTGVYCApaLDNRRIR-TVAGIDLNHADIAGYLPQELG 147
Cdd:PLN03150 366 ESKTLLEEVSALQTLKSS-LGLPLRF--GWNG-DPCVpqqhpWSGADCQ--FDSTKGKwFIDGLGLDNQGLRGFIPNDIS 439

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 148 LLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLdaif 227
Cdd:PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL---- 515

                        170
                 ....*....|....*
gi 240256003 228 inhNRFRFELPDNLG 242
Cdd:PLN03150 516 ---HRASFNFTDNAG 527
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
260-363 3.34e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 56.87  E-value: 3.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 260 IPTSLGDMRNLEEIIFMENgfnsclpSQIGRLKNVTVFDFSFNELVgSLPASIGGMVSMEQLNVAHNRFSgKIPATICQL 339
Cdd:COG4886   88 GLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLT-DLPEPLGNL 158

                         90       100
                 ....*....|....*....|....
gi 240256003 340 PRLENFTFSYNFFTGEPPVCLGLP 363
Cdd:COG4886  159 TNLKSLDLSNNQLTDLPEELGNLT 182
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
131-243 2.06e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 51.09  E-value: 2.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 131 IDLNHADIAgYLPQELGLLTDLALFHINSNRFcGTVPHrFNRLKLLFELDLSNNRFAGIFPTvvLQLPSLKFLDLRFNEF 210
Cdd:COG4886  210 LDLSGNQLT-DLPEPLANLTNLETLDLSNNQL-TDLPE-LGNLTNLEELDLSNNQLTDLPPL--ANLTNLKTLDLSNNQL 284

                         90       100       110
                 ....*....|....*....|....*....|...
gi 240256003 211 EGPVPRELFSKDLDAIFINHNRFRFELPDNLGD 243
Cdd:COG4886  285 TDLKLKELELLLGLNSLLLLLLLLNLLELLILL 317
LRR_8 pfam13855
Leucine rich repeat;
152-210 5.28e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 5.28e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 240256003  152 LALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEF 210
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 84-116 3.97e-04

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 38.81  E-value: 3.97e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 240256003   84 ALQAWKQAiLSDPNNFTTNWI--GSDVCSYTGVYC 116
Cdd:pfam08263   7 ALLAFKSS-LNDPPGALSSWNssSSDPCSWTGVTC 40
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 284-362 4.73e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 44.07  E-value: 4.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240256003 284 LPSQIGRLKNVTVFDFSFNELVGSLPASIGGMV-SMEQLNVAHNRFSGKIPATicQLPRLENFTFSYNFFTGEPPVCLGL 362
Cdd:PLN00113  85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGS 162
Extensin_2 pfam04554
Extensin-like region;
815-856 1.32e-03

Extensin-like region;


Pssm-ID: 252669 [Multi-domain]  Cd Length: 57  Bit Score: 37.82  E-value: 1.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 240256003  815 VHYSPPPPPVIHHSqpppppiyegPLPPIPGISYASPPPPPF 856
Cdd:pfam04554  10 VKQYSPPPPYYYKS----------PPPPVKSPVYKSPPPPVY 41
LRR_8 pfam13855
Leucine rich repeat;
268-328 4.21e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.35  E-value: 4.21e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240256003  268 RNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRF 328
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
Extensin_2 pfam04554
Extensin-like region;
816-854 4.22e-03

Extensin-like region;


Pssm-ID: 252669 [Multi-domain]  Cd Length: 57  Bit Score: 36.28  E-value: 4.22e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 240256003  816 HY-SPPPPPVIHHSQPPPPPIYEGPLPPIPgiSYASPPPP 854
Cdd:pfam04554  20 YYkSPPPPVKSPVYKSPPPPVYKSPPPPKY--VYKSPPPP 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH