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Conserved domains on  [gi|15235882|ref|NP_193411|]
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homeobox protein 2 [Arabidopsis thaliana]

Protein Classification

homeobox domain-containing protein( domain architecture ID 11151467)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
184-227 1.38e-24

homeobox associated leucin zipper;


:

Pssm-ID: 128634  Cd Length: 44  Bit Score: 92.90  E-value: 1.38e-24
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15235882    184 KQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHM 227
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HD-ZIP_N pfam04618
HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine ...
 8-107 2.45e-17

HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.


:

Pssm-ID: 461370  Cd Length: 99  Bit Score: 75.53  E-value: 2.45e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235882     8 LGLSLGLNFP--KKQINLKSNPSVSVTPSSSSFGLFRRSSWNESFTSSVPNSDssqkeTRTFIRGIDVNRPPSTA--EYG 83
Cdd:pfam04618   1 LGLSLSLSLSqnHHPHSLRLNLMPSSSPSSSSSLFHQKNSWNDLFQSSDRASD-----TRSFLRGIDVNRAPSGAavRDE 75

                          90       100
                  ....*....|....*....|....
gi 15235882    84 DEDAGVSSPNSTVSSSTGKRSERE 107
Cdd:pfam04618  76 EEEAGVSSPNSTISSVSGKRSERE 99
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 128-182 1.11e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 66.89  E-value: 1.11e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15235882    128 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTK 182
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
184-227 1.38e-24

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 92.90  E-value: 1.38e-24
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15235882    184 KQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHM 227
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HD-ZIP_N pfam04618
HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine ...
 8-107 2.45e-17

HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.


Pssm-ID: 461370  Cd Length: 99  Bit Score: 75.53  E-value: 2.45e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235882     8 LGLSLGLNFP--KKQINLKSNPSVSVTPSSSSFGLFRRSSWNESFTSSVPNSDssqkeTRTFIRGIDVNRPPSTA--EYG 83
Cdd:pfam04618   1 LGLSLSLSLSqnHHPHSLRLNLMPSSSPSSSSSLFHQKNSWNDLFQSSDRASD-----TRSFLRGIDVNRAPSGAavRDE 75

                          90       100
                  ....*....|....*....|....
gi 15235882    84 DEDAGVSSPNSTVSSSTGKRSERE 107
Cdd:pfam04618  76 EEEAGVSSPNSTISSVSGKRSERE 99
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 128-182 1.11e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 66.89  E-value: 1.11e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15235882    128 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTK 182
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 128-185 1.84e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 66.50  E-value: 1.84e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15235882 128 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQ 185
Cdd:cd00086   2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
Homeodomain pfam00046
Homeodomain;
128-182 1.86e-14

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 66.37  E-value: 1.86e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15235882   128 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTK 182
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
119-185 2.45e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 57.83  E-value: 2.45e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15235882 119 SDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQ 185
Cdd:COG5576  44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
HALZ pfam02183
Homeobox associated leucine zipper;
184-218 2.04e-08

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 49.44  E-value: 2.04e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15235882   184 KQTEVDCEFLRRCCENLT-------EENRRLQKEVTELRALK 218
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
184-227 1.38e-24

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 92.90  E-value: 1.38e-24
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 15235882    184 KQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHM 227
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HD-ZIP_N pfam04618
HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine ...
 8-107 2.45e-17

HD-ZIP protein N terminus; This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.


Pssm-ID: 461370  Cd Length: 99  Bit Score: 75.53  E-value: 2.45e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235882     8 LGLSLGLNFP--KKQINLKSNPSVSVTPSSSSFGLFRRSSWNESFTSSVPNSDssqkeTRTFIRGIDVNRPPSTA--EYG 83
Cdd:pfam04618   1 LGLSLSLSLSqnHHPHSLRLNLMPSSSPSSSSSLFHQKNSWNDLFQSSDRASD-----TRSFLRGIDVNRAPSGAavRDE 75

                          90       100
                  ....*....|....*....|....
gi 15235882    84 DEDAGVSSPNSTVSSSTGKRSERE 107
Cdd:pfam04618  76 EEEAGVSSPNSTISSVSGKRSERE 99
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 128-182 1.11e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 66.89  E-value: 1.11e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15235882    128 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTK 182
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 128-185 1.84e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 66.50  E-value: 1.84e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15235882 128 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQ 185
Cdd:cd00086   2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
Homeodomain pfam00046
Homeodomain;
128-182 1.86e-14

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 66.37  E-value: 1.86e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15235882   128 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTK 182
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
119-185 2.45e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 57.83  E-value: 2.45e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15235882 119 SDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQ 185
Cdd:COG5576  44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
HALZ pfam02183
Homeobox associated leucine zipper;
184-218 2.04e-08

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 49.44  E-value: 2.04e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15235882   184 KQTEVDCEFLRRCCENLT-------EENRRLQKEVTELRALK 218
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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