|
Name |
Accession |
Description |
Interval |
E-value |
| PMD |
pfam10536 |
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of ... |
97-442 |
1.99e-138 |
|
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of transposases.
:
Pssm-ID: 463139 Cd Length: 354 Bit Score: 409.05 E-value: 1.99e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 97 GIFEAIKASTYRIHKNPSLILSLAQNWCPETNTFVFPWGEATITLEDVNVLLGFSISGSSVFASLQSSEMKEAVEKLQK- 175
Cdd:pfam10536 1 GIYEAIMASTYSIRKDNDLILALVERWRPETNTFHFPWGEATITLEDVMVLLGLSVDGDPVFAPLDSTEMRWICEKLLGv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 176 RCQ-------GSMKQESWISSFVDD--EMEHEAFLVLWLSKFVFPDKFCSSISSDVFPLAVRLARGERIAFAPAVLANLY 246
Cdd:pfam10536 81 RPDipksktsGSVTKLSWLKEFMSEvsGLEHRAFLLLWLSRFVFPDTSGNKVSLMYLPLAEDLARGGRLALGPAVLASLY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 247 NDLGHICVlaSIQNVLaSSLFKLVQVWIWERFKSIRPE-------AKVIPRGQPRIAQWSGLKQRFKNVGLIIFHGN--- 316
Cdd:pfam10536 161 RDLGLASM--SLQSTL-CGPLTLLQVWAWERFPILRPAlnqrdfkPSLINKGEPRAARWHDVKRKGNTRKRLKNYRDald 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 317 ------FDWRPYSE-PLENwnpprfyveeakwvrIDEsldgdyddddEFVSFARCVRVSKLVGIGVVENYYPNRVAMQFG 389
Cdd:pfam10536 238 slkpeqFEWRPYTKdPLKN---------------LDD----------ERSSFARCLRVSELVGFDCVEHYLPNRVARQFG 292
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22328697 390 LAQDVP-------VLGTNHRRNFTEEEAWDDYNKPLVGLKLYFP-SRVATASVTTRYRDWW 442
Cdd:pfam10536 293 MDQDIPgpverkdRRGTSADLSTKMESAWKEYNRRIDDINLYIPdSRLFEGDVTSRYMEWW 353
|
|
| DNA_pol_phi super family |
cl47903 |
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
507-566 |
1.91e-04 |
|
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
The actual alignment was detected with superfamily member pfam04931:
Pssm-ID: 461488 Cd Length: 765 Bit Score: 44.54 E-value: 1.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22328697 507 EDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKK-------SDDIENTEGE 566
Cdd:pfam04931 641 EDEEDDDEEEDDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVDEIDELRAKlaealgeHGDDADDDDS 707
|
|
| MDN1 super family |
cl34967 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
488-637 |
5.89e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
The actual alignment was detected with superfamily member COG5271:
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.08 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 488 DDEMKKAKHSTNKRRKRAREDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKKSDDIENTEGER 567
Cdd:COG5271 393 DDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDESTDVTSAEDDIATDEEADSLADEEEEAEAELDTEEDTESA 472
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 568 SRLVADNNVSGLPQKLAYGDETVATTQEETEQKNNENKSSNGVAAEKEEDDERLKQRKLAIKELALKTEA 637
Cdd:COG5271 473 EEDADGDEATDEDDASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTDAAADPEDSDEDALEDETEG 542
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PMD |
pfam10536 |
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of ... |
97-442 |
1.99e-138 |
|
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of transposases.
Pssm-ID: 463139 Cd Length: 354 Bit Score: 409.05 E-value: 1.99e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 97 GIFEAIKASTYRIHKNPSLILSLAQNWCPETNTFVFPWGEATITLEDVNVLLGFSISGSSVFASLQSSEMKEAVEKLQK- 175
Cdd:pfam10536 1 GIYEAIMASTYSIRKDNDLILALVERWRPETNTFHFPWGEATITLEDVMVLLGLSVDGDPVFAPLDSTEMRWICEKLLGv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 176 RCQ-------GSMKQESWISSFVDD--EMEHEAFLVLWLSKFVFPDKFCSSISSDVFPLAVRLARGERIAFAPAVLANLY 246
Cdd:pfam10536 81 RPDipksktsGSVTKLSWLKEFMSEvsGLEHRAFLLLWLSRFVFPDTSGNKVSLMYLPLAEDLARGGRLALGPAVLASLY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 247 NDLGHICVlaSIQNVLaSSLFKLVQVWIWERFKSIRPE-------AKVIPRGQPRIAQWSGLKQRFKNVGLIIFHGN--- 316
Cdd:pfam10536 161 RDLGLASM--SLQSTL-CGPLTLLQVWAWERFPILRPAlnqrdfkPSLINKGEPRAARWHDVKRKGNTRKRLKNYRDald 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 317 ------FDWRPYSE-PLENwnpprfyveeakwvrIDEsldgdyddddEFVSFARCVRVSKLVGIGVVENYYPNRVAMQFG 389
Cdd:pfam10536 238 slkpeqFEWRPYTKdPLKN---------------LDD----------ERSSFARCLRVSELVGFDCVEHYLPNRVARQFG 292
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22328697 390 LAQDVP-------VLGTNHRRNFTEEEAWDDYNKPLVGLKLYFP-SRVATASVTTRYRDWW 442
Cdd:pfam10536 293 MDQDIPgpverkdRRGTSADLSTKMESAWKEYNRRIDDINLYIPdSRLFEGDVTSRYMEWW 353
|
|
| DNA_pol_phi |
pfam04931 |
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
507-566 |
1.91e-04 |
|
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
Pssm-ID: 461488 Cd Length: 765 Bit Score: 44.54 E-value: 1.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22328697 507 EDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKK-------SDDIENTEGE 566
Cdd:pfam04931 641 EDEEDDDEEEDDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVDEIDELRAKlaealgeHGDDADDDDS 707
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
488-637 |
5.89e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.08 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 488 DDEMKKAKHSTNKRRKRAREDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKKSDDIENTEGER 567
Cdd:COG5271 393 DDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDESTDVTSAEDDIATDEEADSLADEEEEAEAELDTEEDTESA 472
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 568 SRLVADNNVSGLPQKLAYGDETVATTQEETEQKNNENKSSNGVAAEKEEDDERLKQRKLAIKELALKTEA 637
Cdd:COG5271 473 EEDADGDEATDEDDASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTDAAADPEDSDEDALEDETEG 542
|
|
| COG5644 |
COG5644 |
U3 small nucleolar RNA-associated protein 14 [Function unknown]; |
477-587 |
7.31e-04 |
|
U3 small nucleolar RNA-associated protein 14 [Function unknown];
Pssm-ID: 227931 [Multi-domain] Cd Length: 869 Bit Score: 42.77 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 477 IVPLSQVY---QKLDDEMKKAKHSTNKRRKrAREDDESAAETEDDES-ADTEDDESADTEDDESAETEDDD--NMTIAQR 550
Cdd:COG5644 124 LVDLDTLLdndQPEKNESGNNDHATDKENL-LESDASSSNDSESEESdSESEIESSDSDHDDENSDSKLDNlrNYIVSLK 202
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 22328697 551 IN-----SRKKSDDIENTEGERSRLVADNNVSGLPQKLAYGD 587
Cdd:COG5644 203 KDeadaeSVLSSDDNDSIEEIKYDPHETNKESGSSETIDITD 244
|
|
| PRK14891 |
PRK14891 |
50S ribosomal protein L24e/unknown domain fusion protein; Provisional |
505-566 |
2.98e-03 |
|
50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Pssm-ID: 184885 [Multi-domain] Cd Length: 131 Bit Score: 38.39 E-value: 2.98e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22328697 505 AREDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKKSDDIENTEGE 566
Cdd:PRK14891 63 AAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEE 124
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PMD |
pfam10536 |
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of ... |
97-442 |
1.99e-138 |
|
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of transposases.
Pssm-ID: 463139 Cd Length: 354 Bit Score: 409.05 E-value: 1.99e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 97 GIFEAIKASTYRIHKNPSLILSLAQNWCPETNTFVFPWGEATITLEDVNVLLGFSISGSSVFASLQSSEMKEAVEKLQK- 175
Cdd:pfam10536 1 GIYEAIMASTYSIRKDNDLILALVERWRPETNTFHFPWGEATITLEDVMVLLGLSVDGDPVFAPLDSTEMRWICEKLLGv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 176 RCQ-------GSMKQESWISSFVDD--EMEHEAFLVLWLSKFVFPDKFCSSISSDVFPLAVRLARGERIAFAPAVLANLY 246
Cdd:pfam10536 81 RPDipksktsGSVTKLSWLKEFMSEvsGLEHRAFLLLWLSRFVFPDTSGNKVSLMYLPLAEDLARGGRLALGPAVLASLY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 247 NDLGHICVlaSIQNVLaSSLFKLVQVWIWERFKSIRPE-------AKVIPRGQPRIAQWSGLKQRFKNVGLIIFHGN--- 316
Cdd:pfam10536 161 RDLGLASM--SLQSTL-CGPLTLLQVWAWERFPILRPAlnqrdfkPSLINKGEPRAARWHDVKRKGNTRKRLKNYRDald 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 317 ------FDWRPYSE-PLENwnpprfyveeakwvrIDEsldgdyddddEFVSFARCVRVSKLVGIGVVENYYPNRVAMQFG 389
Cdd:pfam10536 238 slkpeqFEWRPYTKdPLKN---------------LDD----------ERSSFARCLRVSELVGFDCVEHYLPNRVARQFG 292
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22328697 390 LAQDVP-------VLGTNHRRNFTEEEAWDDYNKPLVGLKLYFP-SRVATASVTTRYRDWW 442
Cdd:pfam10536 293 MDQDIPgpverkdRRGTSADLSTKMESAWKEYNRRIDDINLYIPdSRLFEGDVTSRYMEWW 353
|
|
| DNA_pol_phi |
pfam04931 |
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
507-566 |
1.91e-04 |
|
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
Pssm-ID: 461488 Cd Length: 765 Bit Score: 44.54 E-value: 1.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22328697 507 EDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKK-------SDDIENTEGE 566
Cdd:pfam04931 641 EDEEDDDEEEDDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVDEIDELRAKlaealgeHGDDADDDDS 707
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
488-637 |
5.89e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.08 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 488 DDEMKKAKHSTNKRRKRAREDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKKSDDIENTEGER 567
Cdd:COG5271 393 DDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDESTDVTSAEDDIATDEEADSLADEEEEAEAELDTEEDTESA 472
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 568 SRLVADNNVSGLPQKLAYGDETVATTQEETEQKNNENKSSNGVAAEKEEDDERLKQRKLAIKELALKTEA 637
Cdd:COG5271 473 EEDADGDEATDEDDASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTDAAADPEDSDEDALEDETEG 542
|
|
| COG5644 |
COG5644 |
U3 small nucleolar RNA-associated protein 14 [Function unknown]; |
477-587 |
7.31e-04 |
|
U3 small nucleolar RNA-associated protein 14 [Function unknown];
Pssm-ID: 227931 [Multi-domain] Cd Length: 869 Bit Score: 42.77 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 477 IVPLSQVY---QKLDDEMKKAKHSTNKRRKrAREDDESAAETEDDES-ADTEDDESADTEDDESAETEDDD--NMTIAQR 550
Cdd:COG5644 124 LVDLDTLLdndQPEKNESGNNDHATDKENL-LESDASSSNDSESEESdSESEIESSDSDHDDENSDSKLDNlrNYIVSLK 202
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 22328697 551 IN-----SRKKSDDIENTEGERSRLVADNNVSGLPQKLAYGD 587
Cdd:COG5644 203 KDeadaeSVLSSDDNDSIEEIKYDPHETNKESGSSETIDITD 244
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
505-619 |
1.27e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 42.31 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 505 AREDDESAAETEDDESADTEDDESADTEDDESAETE---DDDNMTIAQRINSR-----KKSDDIENTEGERSRLVADNNV 576
Cdd:COG5271 573 AETEDATENADADETEESADESEEAEASEDEAAEEEeadDDEADADADGAADEeeteeEAAEDEAAEPETDASEAADEDA 652
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 22328697 577 SGLPQKLAYGDETVATTQEETEQKNNENKSSN-GVAAEKEEDDE 619
Cdd:COG5271 653 DAETEAEASADESEEEAEDESETSSEDAEEDAdAAAAEASDDEE 696
|
|
| DNA_pol_phi |
pfam04931 |
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
499-666 |
2.47e-03 |
|
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
Pssm-ID: 461488 Cd Length: 765 Bit Score: 41.07 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 499 NKRRKRAREDDESAAETEDDESADTEDDESADTEDDESAETEDDDnmtiaqrinsrkkSDDIENTEgersrlvaDNNVSG 578
Cdd:pfam04931 628 NPEGQQELFEDEDEDEEDDDEEEDDDDEDDEDSEEDDDEDDDDED-------------EEDDDDED--------VDEIDE 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 579 LPQKLAygdetvattqeeteqknNENKSSNG-VAAEKEEDDERLkqrklaikelalkTEARMLKVENTLAKI-KQWKLTR 656
Cdd:pfam04931 687 LRAKLA-----------------EALGEHGDdADDDDSDSDEDM-------------DDEQMMALDEQLAEIfKERKKAG 736
|
170
....*....|
gi 22328697 657 LHTKKPLVSS 666
Cdd:pfam04931 737 NDKKKKKKDA 746
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
489-637 |
2.66e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 41.15 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 489 DEMKKAKHSTNKRRKRAREDDESAAETEDDESADTEDDESADTEDDESAETEDDDnmtiaQRINSRKKSDDIENTEGErS 568
Cdd:COG5271 685 DAAAAEASDDEEETEEADEDAETASEEADAEEADTEADGTAEEAEEAAEEAESAD-----EEAASLPDEADAEEEAEE-A 758
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22328697 569 RLVADNNVSGLPQKLA--YGDETVATTQEETEQKNNENKSSNGVAAEKEEDDERLKQRKLAIKELALKTEA 637
Cdd:COG5271 759 EEAEEDDADGLEEALEeeKADAEEAATDEEAEAAAEEKEKVADEDQDTDEDALLDEAEADEEEDLDGEDEE 829
|
|
| PRK14891 |
PRK14891 |
50S ribosomal protein L24e/unknown domain fusion protein; Provisional |
505-566 |
2.98e-03 |
|
50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Pssm-ID: 184885 [Multi-domain] Cd Length: 131 Bit Score: 38.39 E-value: 2.98e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22328697 505 AREDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKKSDDIENTEGE 566
Cdd:PRK14891 63 AAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEE 124
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
488-619 |
3.94e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 40.38 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 488 DDEMKKAKHSTNKRRKRAREDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRI-NSRKKSDDIENTEGE 566
Cdd:COG5271 530 DSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENADADETEESADEsEEAEASEDEAAEEEE 609
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 22328697 567 RSRLVADNNVSGLPQKLAYGDETVA--TTQEETEQKNNENKSSNGVAAEKEEDDE 619
Cdd:COG5271 610 ADDDEADADADGAADEEETEEEAAEdeAAEPETDASEAADEDADAETEAEASADE 664
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
507-560 |
6.18e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 39.59 E-value: 6.18e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 22328697 507 EDDESAAETEDDESADTEDDESADTEDDESAETEDDDNMTIAQRINSRKKSDDI 560
Cdd:PRK05901 159 DDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADP 212
|
|
| FYDLN_acid |
pfam09538 |
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a ... |
500-543 |
6.77e-03 |
|
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Pssm-ID: 430674 [Multi-domain] Cd Length: 108 Bit Score: 36.94 E-value: 6.77e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 22328697 500 KRRKRAREDDESAAETEDDESADtEDDESADTEDDESAETEDDD 543
Cdd:pfam09538 57 KAAAEDDEEDDVVAEDVSDEDAD-EEEDGGDDDDDDVDLGDDDD 99
|
|
| FYDLN_acid |
pfam09538 |
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a ... |
500-544 |
6.91e-03 |
|
Protein of unknown function (FYDLN_acid); Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Pssm-ID: 430674 [Multi-domain] Cd Length: 108 Bit Score: 36.56 E-value: 6.91e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 22328697 500 KRRKRAREDDES----AAETEDDESADTEDDESADTEDDESAETEDDDN 544
Cdd:pfam09538 42 LRSRRARAEAAAaapkAAAEDDEEDDVVAEDVSDEDADEEEDGGDDDDD 90
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
488-622 |
7.27e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 39.61 E-value: 7.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22328697 488 DDEMKKAKHSTNKRRKRAREDDESA-AETEDDESADTEDDESADTEDDESaETEDDDNMTIAQRINSRKKSDDIENTEGE 566
Cdd:COG5271 624 DEEETEEEAAEDEAAEPETDASEAAdEDADAETEAEASADESEEEAEDES-ETSSEDAEEDADAAAAEASDDEEETEEAD 702
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 22328697 567 RSRLVADNNvsglpqklaygdetvATTQEETEQKNNENKSSNGVAAEKEEDDERLK 622
Cdd:COG5271 703 EDAETASEE---------------ADAEEADTEADGTAEEAEEAAEEAESADEEAA 743
|
|
| |
