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Conserved domains on  [gi|79470004|ref|NP_192928|]
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STAY-GREEN-like protein [Arabidopsis thaliana]

Protein Classification

staygreen family protein( domain architecture ID 10576907)

staygreen family protein similar to senescence-inducible chloroplastic stay-green proteins that regulate chlorophyll degradation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Staygreen pfam12638
Staygreen protein; This family of proteins have been implicated in chlorophyll degradation. ...
52-204 2.96e-86

Staygreen protein; This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.


:

Pssm-ID: 403741  Cd Length: 147  Bit Score: 253.65  E-value: 2.96e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79470004    52 IFEASKLKVLFLGVDEKKHPaKLPRTYTLTHSDITAKLTLAISQSINNSQLQGwankLFRDEVVGEWKKVKGKMSLHVHC 131
Cdd:pfam12638   1 KFDPSKLSVEFRGGVTKTEP-IIPRRYTLTHSDFTAELFLTIGLVFAYDKING----LMRDEVLAEWKKDNGKYSLHVHC 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79470004   132 HISGGHFFLNlIAKLRYYIFCKELPVVLEAFAHGDEYLLNNHPELQESPVWVYFHSNIPEYNKVECWGPLWEA 204
Cdd:pfam12638  76 YVSGGNFLLD-AAKLRYHIFRKELPLALKAIRYGDRVLFAEHPELDDAPIWVYFHSSYPKYNRIECWGPLRDA 147
 
Name Accession Description Interval E-value
Staygreen pfam12638
Staygreen protein; This family of proteins have been implicated in chlorophyll degradation. ...
52-204 2.96e-86

Staygreen protein; This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.


Pssm-ID: 403741  Cd Length: 147  Bit Score: 253.65  E-value: 2.96e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79470004    52 IFEASKLKVLFLGVDEKKHPaKLPRTYTLTHSDITAKLTLAISQSINNSQLQGwankLFRDEVVGEWKKVKGKMSLHVHC 131
Cdd:pfam12638   1 KFDPSKLSVEFRGGVTKTEP-IIPRRYTLTHSDFTAELFLTIGLVFAYDKING----LMRDEVLAEWKKDNGKYSLHVHC 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79470004   132 HISGGHFFLNlIAKLRYYIFCKELPVVLEAFAHGDEYLLNNHPELQESPVWVYFHSNIPEYNKVECWGPLWEA 204
Cdd:pfam12638  76 YVSGGNFLLD-AAKLRYHIFRKELPLALKAIRYGDRVLFAEHPELDDAPIWVYFHSSYPKYNRIECWGPLRDA 147
 
Name Accession Description Interval E-value
Staygreen pfam12638
Staygreen protein; This family of proteins have been implicated in chlorophyll degradation. ...
52-204 2.96e-86

Staygreen protein; This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.


Pssm-ID: 403741  Cd Length: 147  Bit Score: 253.65  E-value: 2.96e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79470004    52 IFEASKLKVLFLGVDEKKHPaKLPRTYTLTHSDITAKLTLAISQSINNSQLQGwankLFRDEVVGEWKKVKGKMSLHVHC 131
Cdd:pfam12638   1 KFDPSKLSVEFRGGVTKTEP-IIPRRYTLTHSDFTAELFLTIGLVFAYDKING----LMRDEVLAEWKKDNGKYSLHVHC 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79470004   132 HISGGHFFLNlIAKLRYYIFCKELPVVLEAFAHGDEYLLNNHPELQESPVWVYFHSNIPEYNKVECWGPLWEA 204
Cdd:pfam12638  76 YVSGGNFLLD-AAKLRYHIFRKELPLALKAIRYGDRVLFAEHPELDDAPIWVYFHSSYPKYNRIECWGPLRDA 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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