NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15234271|ref|NP_192907|]
View 

hypothetical protein (DUF626) [Arabidopsis thaliana]

Protein Classification

protein_MS5 domain-containing protein( domain architecture ID 10521465)

protein_MS5 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
protein_MS5 pfam04776
Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential ...
 48-162 3.09e-44

Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.


:

Pssm-ID: 428116  Cd Length: 118  Bit Score: 142.38  E-value: 3.09e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234271    48 LP--LEEDPFNDDTGRFYVLDKSQIEDNAWILLYLELVVATSFRNHITHGLTS-LKILKVAMEISRSPGVSVNMGLDAYD 124
Cdd:pfam04776   1 MPdwPSDDAFANDSKRFYVVKESELQENDWIRLYLELALYTKWRSISDTDLSKlLEIKKVVVETKEEDEPPSERKLKAKN 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 15234271   125 ATFYISYKDFCKARVGKEVDRIALVRRILDPQLEILRL 162
Cdd:pfam04776  81 AIFYITFKGLAKARVGEHVDRKAIVRRTMDGKPGHLSL 118
 
Name Accession Description Interval E-value
protein_MS5 pfam04776
Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential ...
 48-162 3.09e-44

Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.


Pssm-ID: 428116  Cd Length: 118  Bit Score: 142.38  E-value: 3.09e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234271    48 LP--LEEDPFNDDTGRFYVLDKSQIEDNAWILLYLELVVATSFRNHITHGLTS-LKILKVAMEISRSPGVSVNMGLDAYD 124
Cdd:pfam04776   1 MPdwPSDDAFANDSKRFYVVKESELQENDWIRLYLELALYTKWRSISDTDLSKlLEIKKVVVETKEEDEPPSERKLKAKN 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 15234271   125 ATFYISYKDFCKARVGKEVDRIALVRRILDPQLEILRL 162
Cdd:pfam04776  81 AIFYITFKGLAKARVGEHVDRKAIVRRTMDGKPGHLSL 118
A_thl_para_3677 TIGR01572
Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of ...
 52-164 5.27e-23

Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.


Pssm-ID: 273698 [Multi-domain]  Cd Length: 265  Bit Score: 92.21  E-value: 5.27e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234271    52 EDPFNDDTGRFYVLDKSQIEDNAWILLYLELVVATSFRNHIT-HGLTSLKILKVAMEiSRSPGVSVNMGLDAYDATFYIS 130
Cdd:TIGR01572 151 DDALMSDQKRFYRVKESELRENDWISLYLELALVSHDRGDMRlKSLSQLQIVKVVIE-TREDFKPNKEKLNAKTAIVYIT 229

                          90       100       110
                  ....*....|....*....|....*....|....
gi 15234271   131 YKDFCKARVGKEVDRIALVRRILDPQLEILRLGG 164
Cdd:TIGR01572 230 FKGLNKPRIGEPVDRKAIVRRIIDEITGHLCLEG 263
 
Name Accession Description Interval E-value
protein_MS5 pfam04776
Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential ...
 48-162 3.09e-44

Protein MS5; Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.


Pssm-ID: 428116  Cd Length: 118  Bit Score: 142.38  E-value: 3.09e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234271    48 LP--LEEDPFNDDTGRFYVLDKSQIEDNAWILLYLELVVATSFRNHITHGLTS-LKILKVAMEISRSPGVSVNMGLDAYD 124
Cdd:pfam04776   1 MPdwPSDDAFANDSKRFYVVKESELQENDWIRLYLELALYTKWRSISDTDLSKlLEIKKVVVETKEEDEPPSERKLKAKN 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 15234271   125 ATFYISYKDFCKARVGKEVDRIALVRRILDPQLEILRL 162
Cdd:pfam04776  81 AIFYITFKGLAKARVGEHVDRKAIVRRTMDGKPGHLSL 118
A_thl_para_3677 TIGR01572
Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of ...
 52-164 5.27e-23

Arabidopsis paralogous family TIGR01572; This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.


Pssm-ID: 273698 [Multi-domain]  Cd Length: 265  Bit Score: 92.21  E-value: 5.27e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234271    52 EDPFNDDTGRFYVLDKSQIEDNAWILLYLELVVATSFRNHIT-HGLTSLKILKVAMEiSRSPGVSVNMGLDAYDATFYIS 130
Cdd:TIGR01572 151 DDALMSDQKRFYRVKESELRENDWISLYLELALVSHDRGDMRlKSLSQLQIVKVVIE-TREDFKPNKEKLNAKTAIVYIT 229

                          90       100       110
                  ....*....|....*....|....*....|....
gi 15234271   131 YKDFCKARVGKEVDRIALVRRILDPQLEILRLGG 164
Cdd:TIGR01572 230 FKGLNKPRIGEPVDRKAIVRRIIDEITGHLCLEG 263
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH