NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15235257|ref|NP_192124|]
View 

ARM repeat superfamily protein [Arabidopsis thaliana]

Protein Classification

armadillo/beta-catenin-like repeat-containing protein( domain architecture ID 1000979)

armadillo/beta-catenin-like repeat-containing protein similar to Saccharomyces cerevisiae vacuolar protein 8 that functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SRP1 super family cl34886
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
10-529 0e+00

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


The actual alignment was detected with superfamily member COG5064:

Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 571.45  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257  10 EVRRNRY--KVAVDAEEGRRRREDNLVEIRKNKREENLQKKRftssmAFGSATGQTEQDLSSANQ-LKDNLPAMVAGIWS 86
Cdd:COG5064   8 EARRYNFkgKGRFSADELRRRREEQQVELRKQKREELLNKRR-----NLADVSEEAESSFIPMEQqFYSELPQLTQQLFS 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257  87 EDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIF 166
Cdd:COG5064  83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 167 IQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNEN-TKLSMLRNATWTLSNFCRGK-PPPAFEQTQ 244
Cdd:COG5064 163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSaIHISMLRNATWTLSNLCRGKnPPPDWSNIS 242

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 245 PALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQM 324
Cdd:COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 325 VLDQQALPCLLNLLKNNyKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGT 404
Cdd:COG5064 323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 405 H--DQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKnLGHTGEDNLYAQMIDEAEGLEKIENLQSHDN 482
Cdd:COG5064 402 NrpDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR-LRYGKNINIYAVYVEKAGGMDAIHGLQDSVN 480

                       490       500       510       520       530
                ....*....|....*....|....*....|....*....|....*....|
gi 15235257 483 NDIYDKAVKILETFWTEDNEEEGNdenhAPQS---GFQFGSTNVPPGQFN 529
Cdd:COG5064 481 RTIYDKAYSIIEKFFGEEDAVDEL----APETagnTFTFGSNVNQQGNFN 526
 
Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
10-529 0e+00

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 571.45  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257  10 EVRRNRY--KVAVDAEEGRRRREDNLVEIRKNKREENLQKKRftssmAFGSATGQTEQDLSSANQ-LKDNLPAMVAGIWS 86
Cdd:COG5064   8 EARRYNFkgKGRFSADELRRRREEQQVELRKQKREELLNKRR-----NLADVSEEAESSFIPMEQqFYSELPQLTQQLFS 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257  87 EDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIF 166
Cdd:COG5064  83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 167 IQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNEN-TKLSMLRNATWTLSNFCRGK-PPPAFEQTQ 244
Cdd:COG5064 163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSaIHISMLRNATWTLSNLCRGKnPPPDWSNIS 242

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 245 PALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQM 324
Cdd:COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 325 VLDQQALPCLLNLLKNNyKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGT 404
Cdd:COG5064 323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 405 H--DQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKnLGHTGEDNLYAQMIDEAEGLEKIENLQSHDN 482
Cdd:COG5064 402 NrpDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR-LRYGKNINIYAVYVEKAGGMDAIHGLQDSVN 480

                       490       500       510       520       530
                ....*....|....*....|....*....|....*....|....*....|
gi 15235257 483 NDIYDKAVKILETFWTEDNEEEGNdenhAPQS---GFQFGSTNVPPGQFN 529
Cdd:COG5064 481 RTIYDKAYSIIEKFFGEEDAVDEL----APETagnTFTFGSNVNQQGNFN 526
IBB pfam01749
Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), ...
 12-96 2.41e-30

Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain.


Pssm-ID: 460311 [Multi-domain]  Cd Length: 79  Bit Score: 113.02  E-value: 2.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257    12 RRNRYKVAV-DAEEGRRRREDNLVEIRKNKREENLQKKRftssmafgSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSN 90
Cdd:pfam01749   1 RRKSFKNKGkDADELRRRREEVQVELRKQKREEQLLKRR--------NVGAPSSSSSSAESQLLESLPEMVQGVNSDDPE 72


                  ....*.
gi 15235257    91 SQLEAT 96
Cdd:pfam01749  73 LQLEAT 78
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 150-189 3.69e-09

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 52.05  E-value: 3.69e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 15235257    150 TSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVA 189
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 150-378 3.29e-05

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 47.02  E-value: 3.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257   150 TSENTNVIIES--GAVPIFIQLLSSASEDVREQAVWALGNVAGDSpKCRDLVLSYGAMTPLLSQFNENT----------- 216
Cdd:PLN03200   45 TREEARKAIGShsQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLRVKVLLGGCIPPLLSLLKSGSaeaqkaaaeai 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257   217 ---KLSMLRNATWTLSNFCRGKPPPAFEQTQPALPvLERLVqsmdEEVLTDAcwaLSYLSDNSNDKIQAVIEAGVVPRLI 293
Cdd:PLN03200  124 yavSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK-QDKVV----EGLLTGA---LRNLCGSTDGFWSATLEAGGVDILV 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257   294 QLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGI 373
Cdd:PLN03200  196 KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGG 275


                  ....*
gi 15235257   374 IQSLV 378
Cdd:PLN03200  276 IPALI 280
Syo1_like cd13394
Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes ...
 73-442 4.80e-04

Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1).


Pssm-ID: 240521 [Multi-domain]  Cd Length: 597  Bit Score: 42.68  E-value: 4.80e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257  73 LKDNLPAMVAGIWSEDSNSQL--EATNLLRKLlSIEQNPPI-NEVVQSGVVPRVVKFLSR---------DDFPKLQFEAA 140
Cdd:cd13394  75 LKEKLVQILIERLLDDSNTEVvvEAFGALRNL-AIEEGYDVcVHLWRKDILTPLEALLKKissslealeEDPSKAKKESQ 153

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 141 ---WA--------LTNIASGTSENTNVIIESGAVPIFIQLL-----SSASEDVREQAVWALGNVAGDSPKCRDLVLSYGA 204
Cdd:cd13394 154 rllFDfaenvlslLWNLAEGSDEILSAVNKEDLLLFLLAILinfltSKLPTSLFNAALQCLYTLSEDNPEFIDKLSSDPE 233

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 205 MTPLLSQFNENTKLSMLrNATWTLS-----NFCRGKPPPAFEQTQPA---LPVLERLVQSMDEEVLTDAC---------- 266
Cdd:cd13394 234 ILGNLLDIVSSDPSSSN-ILLKVLVcgillNILEVLSWLAGKDAAADailLPILSAILSILALEILANICkeldkkddea 312

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 267 -------------WALSYLSDNSNDKIQAVIEAGVVPRLIQLLGhSSPSVLIPALRTIGNIVTGDDLQTQM-VLDQQALP 332
Cdd:cd13394 313 medeqsdedeeedEDDEASETLVPELSPLEISLDLLTALLELIA-PTPESVEPILPSSTIEELPPPLSKLLlSLHSRALE 391

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 333 CLLNLlknnykksikkeaCWTIS--NITAGNADQIQAVIDAgiIQSLVWV-LQSAEFEVKKEA---AWGISNATSG---- 402
Cdd:cd13394 392 CLNNL-------------LWLFLslELGGDWNNSLQQLWDL--LAQLIFKdVISADLELLEAAtsvLWALLKSLGGeill 456

                       410       420       430       440
                ....*....|....*....|....*....|....*....|..
gi 15235257 403 --GTHDQIKFMVsQGCIkplcdllTCPDLKVVTVCLEALENI 442
Cdd:cd13394 457 qqNTHDFIQSLI-EASK-------TDADLELRVRCVGVLGSL 490
 
Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
10-529 0e+00

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 571.45  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257  10 EVRRNRY--KVAVDAEEGRRRREDNLVEIRKNKREENLQKKRftssmAFGSATGQTEQDLSSANQ-LKDNLPAMVAGIWS 86
Cdd:COG5064   8 EARRYNFkgKGRFSADELRRRREEQQVELRKQKREELLNKRR-----NLADVSEEAESSFIPMEQqFYSELPQLTQQLFS 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257  87 EDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIF 166
Cdd:COG5064  83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 167 IQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNEN-TKLSMLRNATWTLSNFCRGK-PPPAFEQTQ 244
Cdd:COG5064 163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSaIHISMLRNATWTLSNLCRGKnPPPDWSNIS 242

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 245 PALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQM 324
Cdd:COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 325 VLDQQALPCLLNLLKNNyKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGT 404
Cdd:COG5064 323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 405 H--DQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKnLGHTGEDNLYAQMIDEAEGLEKIENLQSHDN 482
Cdd:COG5064 402 NrpDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR-LRYGKNINIYAVYVEKAGGMDAIHGLQDSVN 480

                       490       500       510       520       530
                ....*....|....*....|....*....|....*....|....*....|
gi 15235257 483 NDIYDKAVKILETFWTEDNEEEGNdenhAPQS---GFQFGSTNVPPGQFN 529
Cdd:COG5064 481 RTIYDKAYSIIEKFFGEEDAVDEL----APETagnTFTFGSNVNQQGNFN 526
IBB pfam01749
Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), ...
 12-96 2.41e-30

Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain.


Pssm-ID: 460311 [Multi-domain]  Cd Length: 79  Bit Score: 113.02  E-value: 2.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257    12 RRNRYKVAV-DAEEGRRRREDNLVEIRKNKREENLQKKRftssmafgSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSN 90
Cdd:pfam01749   1 RRKSFKNKGkDADELRRRREEVQVELRKQKREEQLLKRR--------NVGAPSSSSSSAESQLLESLPEMVQGVNSDDPE 72


                  ....*.
gi 15235257    91 SQLEAT 96
Cdd:pfam01749  73 LQLEAT 78
Arm_3 pfam16186
Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic ...
 463-497 2.22e-15

Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic proteins such as importin subunit alpha-2, as the last of the repeating units.


Pssm-ID: 465050 [Multi-domain]  Cd Length: 49  Bit Score: 69.93  E-value: 2.22e-15
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15235257   463 QMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497
Cdd:pfam16186   1 LLIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYF 35
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 150-189 1.77e-10

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 55.92  E-value: 1.77e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 15235257   150 TSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVA 189
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
HEAT COG1413
HEAT repeat [General function prediction only];
139-314 4.45e-10

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 57.72  E-value: 4.45e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 139 AAWALTNIASgtsentnviieSGAVPIFIQLLSSASEDVREQAVWALGNVaGDSPkcrdlvlsygAMTPLLSQFNENTKl 218
Cdd:COG1413   5 AARALGRLGD-----------PAAVPALIAALADEDPDVRAAAARALGRL-GDPR----------AVPALLEALKDPDP- 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 219 SMLRNATWTLSNFcrgkpppafeQTQPALPVLERLVQSMDEEVLTDACWALSYLSDnsndkiqavieAGVVPRLIQLLGH 298
Cdd:COG1413  62 EVRAAAAEALGRI----------GDPEAVPALIAALKDEDPEVRRAAAEALGRLGD-----------PAAVPALLEALKD 120

                       170
                ....*....|....*.
gi 15235257 299 SSPSVLIPALRTIGNI 314
Cdd:COG1413 121 PDWEVRRAAARALGRL 136
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 150-189 3.69e-09

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 52.05  E-value: 3.69e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 15235257    150 TSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVA 189
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 276-316 6.59e-09

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 51.69  E-value: 6.59e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15235257   276 SNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVT 316
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 361-401 2.01e-08

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 50.15  E-value: 2.01e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15235257   361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATS 401
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 133-188 1.09e-07

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 48.52  E-value: 1.09e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15235257   133 PKLQFEAAWALTNIASGTSENTNVIIESgAVPIFIQLLSSASEDVREQAVWALGNV 188
Cdd:pfam13513   1 WRVREAAALALGSLAEGGPDLLAPAVPE-LLPALLPLLNDDSDLVREAAAWALGRL 55
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 276-315 1.38e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 47.81  E-value: 1.38e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 15235257    276 SNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIV 315
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 318-359 2.33e-07

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 47.06  E-value: 2.33e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15235257   318 DDLQTQMVLDQQALPCLLNLLKNNyKKSIKKEACWTISNITA 359
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSP-DEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 361-401 2.37e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 47.04  E-value: 2.37e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 15235257    361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATS 401
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 108-148 2.77e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 47.04  E-value: 2.77e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 15235257    108 NPPINEVVQSGVVPRVVKFLSRDDfPKLQFEAAWALTNIAS 148
Cdd:smart00185   2 DENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 120-188 4.38e-07

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 47.72  E-value: 4.38e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15235257   120 VPRVVKFLSRDDFPKLQFEAAWALTNIASgtsentnviieSGAVPIFIQLLSSASEDVREQAVWALGNV 188
Cdd:pfam13646   1 LPALLQALLRDPDPEVRAAAIRALGRIGD-----------PEAVPALLELLKDEDPAVRRAAAEALGKI 58
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 108-148 5.41e-07

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 45.91  E-value: 5.41e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15235257   108 NPPINEVVQSGVVPRVVKFLSrDDFPKLQFEAAWALTNIAS 148
Cdd:pfam00514   2 PENKQAVIEAGAVPPLVRLLS-SPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 318-359 1.70e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 44.73  E-value: 1.70e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 15235257    318 DDLQTQMVLDQQALPCLLNLLKNNYKKsIKKEACWTISNITA 359
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 404-442 1.83e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 44.75  E-value: 1.83e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15235257   404 THDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENI 442
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNL 39
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 404-442 1.88e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 44.73  E-value: 1.88e-06
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 15235257    404 THDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENI 442
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
HEAT COG1413
HEAT repeat [General function prediction only];
177-340 3.42e-06

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 46.55  E-value: 3.42e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 177 VREQAVWALGNVAGDspkcrdlvlsygAMTPLLSQFNENTKLSMLRNATWTLSNFcrgkpppafeQTQPALPVLERLVQS 256
Cdd:COG1413   1 VRRAAARALGRLGDP------------AAVPALIAALADEDPDVRAAAARALGRL----------GDPRAVPALLEALKD 58

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 257 MDEEVLTDACWALSYLSDnsndkiqavieAGVVPRLIQLLGHSSPSVLIPALRTIGNIvtgddlqtqmvLDQQALPCLLN 336
Cdd:COG1413  59 PDPEVRAAAAEALGRIGD-----------PEAVPALIAALKDEDPEVRRAAAEALGRL-----------GDPAAVPALLE 116


                ....
gi 15235257 337 LLKN 340
Cdd:COG1413 117 ALKD 120
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 246-274 1.24e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.44  E-value: 1.24e-05
                          10        20
                  ....*....|....*....|....*....
gi 15235257   246 ALPVLERLVQSMDEEVLTDACWALSYLSD 274
Cdd:pfam00514  13 AVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 150-378 3.29e-05

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 47.02  E-value: 3.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257   150 TSENTNVIIES--GAVPIFIQLLSSASEDVREQAVWALGNVAGDSpKCRDLVLSYGAMTPLLSQFNENT----------- 216
Cdd:PLN03200   45 TREEARKAIGShsQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLRVKVLLGGCIPPLLSLLKSGSaeaqkaaaeai 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257   217 ---KLSMLRNATWTLSNFCRGKPPPAFEQTQPALPvLERLVqsmdEEVLTDAcwaLSYLSDNSNDKIQAVIEAGVVPRLI 293
Cdd:PLN03200  124 yavSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK-QDKVV----EGLLTGA---LRNLCGSTDGFWSATLEAGGVDILV 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257   294 QLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGI 373
Cdd:PLN03200  196 KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGG 275


                  ....*
gi 15235257   374 IQSLV 378
Cdd:PLN03200  276 IPALI 280
HEAT COG1413
HEAT repeat [General function prediction only];
119-189 5.87e-05

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 43.08  E-value: 5.87e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15235257 119 VVPRVVKFLsRDDFPKLQFEAAWALTNIASgtsentnviieSGAVPIFIQLLSSASEDVREQAVWALGNVA 189
Cdd:COG1413  79 AVPALIAAL-KDEDPEVRRAAAEALGRLGD-----------PAAVPALLEALKDPDWEVRRAAARALGRLG 137
RPN2 COG5116
26S proteasome regulatory complex component [Posttranslational modification, protein turnover, ...
 123-296 3.01e-04

26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227446 [Multi-domain]  Cd Length: 926  Bit Score: 43.79  E-value: 3.01e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 123 VVKFLSRDDFPKLQFEAAWALTNIASGTSENTNViieSGAVPIFIqllSSASEDVREQAVWALGNVAgdspkCRDLVLSY 202
Cdd:COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGNLGVV---STLLHYAV---SDGNDDVRRAAVIALGFVC-----CDDRDLLV 588

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 203 GAMTPLLSQFNentklSMLRNAT-WTLSNFCRGKpppafeQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQ 281
Cdd:COG5116 589 GTVELLSESHN-----FHVRAGVaVALGIACAGT------GDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657

                       170
                ....*....|....*
gi 15235257 282 AVIeAGVVPRLIQLL 296
Cdd:COG5116 658 PNV-KRIIKKFNRVI 671
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 248-355 3.95e-04

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 39.63  E-value: 3.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257   248 PVLERLVQSMDEEVLTDACWALSYLSDnsndkiqavieAGVVPRLIQLLGHSSPSVLIPALRTIGNIvtGddlqtqmvlD 327
Cdd:pfam13646   3 ALLQALLRDPDPEVRAAAIRALGRIGD-----------PEAVPALLELLKDEDPAVRRAAAEALGKI--G---------D 60

                          90       100
                  ....*....|....*....|....*...
gi 15235257   328 QQALPCLLNLLKNNYKKSIKKEACWTIS 355
Cdd:pfam13646  61 PEALPALLELLRDDDDDVVRAAAAEALA 88
Syo1_like cd13394
Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes ...
 73-442 4.80e-04

Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1).


Pssm-ID: 240521 [Multi-domain]  Cd Length: 597  Bit Score: 42.68  E-value: 4.80e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257  73 LKDNLPAMVAGIWSEDSNSQL--EATNLLRKLlSIEQNPPI-NEVVQSGVVPRVVKFLSR---------DDFPKLQFEAA 140
Cdd:cd13394  75 LKEKLVQILIERLLDDSNTEVvvEAFGALRNL-AIEEGYDVcVHLWRKDILTPLEALLKKissslealeEDPSKAKKESQ 153

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 141 ---WA--------LTNIASGTSENTNVIIESGAVPIFIQLL-----SSASEDVREQAVWALGNVAGDSPKCRDLVLSYGA 204
Cdd:cd13394 154 rllFDfaenvlslLWNLAEGSDEILSAVNKEDLLLFLLAILinfltSKLPTSLFNAALQCLYTLSEDNPEFIDKLSSDPE 233

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 205 MTPLLSQFNENTKLSMLrNATWTLS-----NFCRGKPPPAFEQTQPA---LPVLERLVQSMDEEVLTDAC---------- 266
Cdd:cd13394 234 ILGNLLDIVSSDPSSSN-ILLKVLVcgillNILEVLSWLAGKDAAADailLPILSAILSILALEILANICkeldkkddea 312

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 267 -------------WALSYLSDNSNDKIQAVIEAGVVPRLIQLLGhSSPSVLIPALRTIGNIVTGDDLQTQM-VLDQQALP 332
Cdd:cd13394 313 medeqsdedeeedEDDEASETLVPELSPLEISLDLLTALLELIA-PTPESVEPILPSSTIEELPPPLSKLLlSLHSRALE 391

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257 333 CLLNLlknnykksikkeaCWTIS--NITAGNADQIQAVIDAgiIQSLVWV-LQSAEFEVKKEA---AWGISNATSG---- 402
Cdd:cd13394 392 CLNNL-------------LWLFLslELGGDWNNSLQQLWDL--LAQLIFKdVISADLELLEAAtsvLWALLKSLGGeill 456

                       410       420       430       440
                ....*....|....*....|....*....|....*....|..
gi 15235257 403 --GTHDQIKFMVsQGCIkplcdllTCPDLKVVTVCLEALENI 442
Cdd:cd13394 457 qqNTHDFIQSLI-EASK-------TDADLELRVRCVGVLGSL 490
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 301-357 5.07e-04

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 38.12  E-value: 5.07e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15235257   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQqALPCLLNLLKNNyKKSIKKEACWTISNI 357
Cdd:pfam13513   1 WRVREAAALALGSLAEGGPDLLAPAVPE-LLPALLPLLNDD-SDLVREAAAWALGRL 55
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 192-233 5.78e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 37.43  E-value: 5.78e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15235257   192 SPKCRDLVLSYGAMTPLLSQFNeNTKLSMLRNATWTLSNFCR 233
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLS-SPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 246-274 2.20e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 35.87  E-value: 2.20e-03
                           10        20
                   ....*....|....*....|....*....
gi 15235257    246 ALPVLERLVQSMDEEVLTDACWALSYLSD 274
Cdd:smart00185  13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 86-190 2.33e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 40.86  E-value: 2.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257    86 SEDSNSQLEATNLLRKLLSIEQNPpINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPI 165
Cdd:PLN03200  200 SGNSDAQANAASLLARLMMAFESS-ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPA 278

                          90       100       110
                  ....*....|....*....|....*....|....
gi 15235257   166 FIQLLSSASEDV---------REQAVWALGNVAG 190
Cdd:PLN03200  279 LINATVAPSKEFmqgefaqalQENAMGALANICG 312
HEAT pfam02985
HEAT repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see ...
 163-189 3.47e-03

HEAT repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514).


Pssm-ID: 460773  Cd Length: 31  Bit Score: 35.20  E-value: 3.47e-03
                          10        20
                  ....*....|....*....|....*..
gi 15235257   163 VPIFIQLLSSASEDVREQAVWALGNVA 189
Cdd:pfam02985   2 LPLLLKLLNDPSPEVREAAAEALGELA 28
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 177-231 5.61e-03

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 35.04  E-value: 5.61e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15235257   177 VREQAVWALGNVAGDSPkcRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNF 231
Cdd:pfam13513   3 VREAAALALGSLAEGGP--DLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL 55
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 265-314 6.90e-03

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 35.04  E-value: 6.90e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15235257   265 ACWALSYLSDNSNDKIQAVIEAgVVPRLIQLLGHSSPSVLIPALRTIGNI 314
Cdd:pfam13513   7 AALALGSLAEGGPDLLAPAVPE-LLPALLPLLNDDSDLVREAAAWALGRL 55
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 163-270 7.21e-03

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 35.78  E-value: 7.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235257   163 VPIFIQLL-SSASEDVREQAVWALGNVagDSPKCRDLVLSygamtpLLSQFNENTKlsmlRNATWTLSNFcrgkpppafe 241
Cdd:pfam13646   1 LPALLQALlRDPDPEVRAAAIRALGRI--GDPEAVPALLE------LLKDEDPAVR----RAAAEALGKI---------- 58

                          90       100       110
                  ....*....|....*....|....*....|
gi 15235257   242 QTQPALPVLERLVQSM-DEEVLTDACWALS 270
Cdd:pfam13646  59 GDPEALPALLELLRDDdDDVVRAAAAEALA 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH