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Conserved domains on  [gi|15236999|ref|NP_192004|]
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hypothetical protein (DUF688) [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF688 super family cl04934
Protein of unknown function (DUF688); This family contains several uncharacterized proteins ...
 1-56 1.77e-03

Protein of unknown function (DUF688); This family contains several uncharacterized proteins found in Arabidopsis thaliana.


The actual alignment was detected with superfamily member pfam05097:

Pssm-ID: 368284  Cd Length: 443  Bit Score: 39.75  E-value: 1.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15236999     1 MEAEKETEQEGNLTVMKLPVLPTKPNTHSHSMSSPIHSSisASVPFSWEEEPGKPK 56
Cdd:pfam05097  21 TPDDSEEEEKRKMTTSTREILPSCPVTKSEIDSGPVREP--GSVPFKWEQTPGKPK 74
 
Name Accession Description Interval E-value
DUF688 pfam05097
Protein of unknown function (DUF688); This family contains several uncharacterized proteins ...
 1-56 1.77e-03

Protein of unknown function (DUF688); This family contains several uncharacterized proteins found in Arabidopsis thaliana.


Pssm-ID: 368284  Cd Length: 443  Bit Score: 39.75  E-value: 1.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15236999     1 MEAEKETEQEGNLTVMKLPVLPTKPNTHSHSMSSPIHSSisASVPFSWEEEPGKPK 56
Cdd:pfam05097  21 TPDDSEEEEKRKMTTSTREILPSCPVTKSEIDSGPVREP--GSVPFKWEQTPGKPK 74
 
Name Accession Description Interval E-value
DUF688 pfam05097
Protein of unknown function (DUF688); This family contains several uncharacterized proteins ...
 1-56 1.77e-03

Protein of unknown function (DUF688); This family contains several uncharacterized proteins found in Arabidopsis thaliana.


Pssm-ID: 368284  Cd Length: 443  Bit Score: 39.75  E-value: 1.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15236999     1 MEAEKETEQEGNLTVMKLPVLPTKPNTHSHSMSSPIHSSisASVPFSWEEEPGKPK 56
Cdd:pfam05097  21 TPDDSEEEEKRKMTTSTREILPSCPVTKSEIDSGPVREP--GSVPFKWEQTPGKPK 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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