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Conserved domains on  [gi|15228625|ref|NP_191748|]
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homeobox 12 [Arabidopsis thaliana]

Protein Classification

homeobox-leucine zipper protein( domain architecture ID 11079011)

homeobox-leucine zipper protein is a transcription factor that may function in plant development and/or in stress adaptation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
33-83 1.43e-14

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 65.98  E-value: 1.43e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15228625    33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 83
Cdd:pfam00046   6 TFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HALZ pfam02183
Homeobox associated leucine zipper;
85-126 4.94e-14

Homeobox associated leucine zipper;


:

Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 64.08  E-value: 4.94e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15228625    85 KQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEM 126
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
33-83 1.43e-14

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 65.98  E-value: 1.43e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15228625    33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 83
Cdd:pfam00046   6 TFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HALZ pfam02183
Homeobox associated leucine zipper;
85-126 4.94e-14

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 64.08  E-value: 4.94e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15228625    85 KQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEM 126
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 33-83 2.41e-13

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 62.65  E-value: 2.41e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 15228625     33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 83
Cdd:smart00389   7 SFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 33-86 2.85e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 59.95  E-value: 2.85e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 15228625  33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQ 86
Cdd:cd00086   6 RFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
33-86 6.17e-06

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 44.73  E-value: 6.17e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 15228625  33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQ 86
Cdd:COG5576  57 RTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
COG4026 COG4026
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ...
 79-134 9.36e-03

Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];


Pssm-ID: 443204 [Multi-domain]  Cd Length: 287  Bit Score: 36.63  E-value: 9.36e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15228625  79 RARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKH 134
Cdd:COG4026 118 RAGLKSLQNIPEYNELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYK 173
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
33-83 1.43e-14

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 65.98  E-value: 1.43e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15228625    33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 83
Cdd:pfam00046   6 TFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HALZ pfam02183
Homeobox associated leucine zipper;
85-126 4.94e-14

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 64.08  E-value: 4.94e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15228625    85 KQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEM 126
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 33-83 2.41e-13

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 62.65  E-value: 2.41e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 15228625     33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 83
Cdd:smart00389   7 SFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 33-86 2.85e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 59.95  E-value: 2.85e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 15228625  33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQ 86
Cdd:cd00086   6 RFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
33-86 6.17e-06

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 44.73  E-value: 6.17e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 15228625  33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQ 86
Cdd:COG5576  57 RTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
COG4026 COG4026
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ...
 79-134 9.36e-03

Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];


Pssm-ID: 443204 [Multi-domain]  Cd Length: 287  Bit Score: 36.63  E-value: 9.36e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15228625  79 RARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKH 134
Cdd:COG4026 118 RAGLKSLQNIPEYNELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYK 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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