nucleotidyltransferase [Arabidopsis thaliana]
nucleotidyltransferase domain-containing protein( domain architecture ID 10143992)
nucleotidyltransferase domain-containing protein similar to Trypanosoma brucei terminal uridylyltransferase 7 (TUTase 7) which, during post-transcriptional editing of mitochondrial RNA, catalyzes the addition of uridine (U) to ssRNA with a preference for a 3'-terminal U and adds the number of Us specified by a guide RNA to precleaved dsRNA editing substrates, and to Drosophila melanogaster Monkey king protein (Mkg)
List of domain hits
Name | Accession | Description | Interval | E-value | |||
NT_PAP_TUTase | cd05402 | Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; ... |
62-170 | 4.16e-14 | |||
Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. : Pssm-ID: 143392 [Multi-domain] Cd Length: 114 Bit Score: 69.89 E-value: 4.16e-14
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Name | Accession | Description | Interval | E-value | ||||
NT_PAP_TUTase | cd05402 | Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; ... |
62-170 | 4.16e-14 | ||||
Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Pssm-ID: 143392 [Multi-domain] Cd Length: 114 Bit Score: 69.89 E-value: 4.16e-14
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TRF4 | COG5260 | DNA polymerase sigma [Replication, recombination and repair]; |
48-258 | 8.86e-11 | ||||
DNA polymerase sigma [Replication, recombination and repair]; Pssm-ID: 227585 [Multi-domain] Cd Length: 482 Bit Score: 65.95 E-value: 8.86e-11
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Name | Accession | Description | Interval | E-value | ||||
NT_PAP_TUTase | cd05402 | Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; ... |
62-170 | 4.16e-14 | ||||
Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Pssm-ID: 143392 [Multi-domain] Cd Length: 114 Bit Score: 69.89 E-value: 4.16e-14
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TRF4 | COG5260 | DNA polymerase sigma [Replication, recombination and repair]; |
48-258 | 8.86e-11 | ||||
DNA polymerase sigma [Replication, recombination and repair]; Pssm-ID: 227585 [Multi-domain] Cd Length: 482 Bit Score: 65.95 E-value: 8.86e-11
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Blast search parameters | ||||
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