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Conserved domains on  [gi|186511289|ref|NP_191706|]
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photosystem I light harvesting complex protein [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 859)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 super family cl02879
fucoxanthin-chlorophyll a/c binding protein; Provisional
 50-255 1.62e-113

fucoxanthin-chlorophyll a/c binding protein; Provisional


The actual alignment was detected with superfamily member PLN00098:

Pssm-ID: 470693  Cd Length: 267  Bit Score: 326.87  E-value: 1.62e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  50 PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 129
Cdd:PLN00098  60 PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAG 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 130 EQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKE 209
Cdd:PLN00098 140 AREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKE 219

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 186511289 210 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255
Cdd:PLN00098 220 IKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265
 
Name Accession Description Interval E-value
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 50-255 1.62e-113

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 326.87  E-value: 1.62e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  50 PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 129
Cdd:PLN00098  60 PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAG 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 130 EQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKE 209
Cdd:PLN00098 140 AREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKE 219

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 186511289 210 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255
Cdd:PLN00098 220 IKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
61-228 2.87e-69

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 210.63  E-value: 2.87e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289   61 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTD--KT 138
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAGAVALHAQsvPT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  139 TLFVVELILIGWAEGRRWADIIKPGSVNtdpvfpnnkltGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
Cdd:pfam00504  81 LLALQILLLMGFLELARWQGGKAPGLGG-----------GGDRGYPGGFGFDPLGLAKKDPETLAELKLKELKNGRLAMI 149

                         170
                  ....*....|
gi 186511289  219 AVMGAWFQHI 228
Cdd:pfam00504 150 AFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 50-255 1.62e-113

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 326.87  E-value: 1.62e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  50 PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 129
Cdd:PLN00098  60 PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAG 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 130 EQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKE 209
Cdd:PLN00098 140 AREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKE 219

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 186511289 210 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255
Cdd:PLN00098 220 IKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 37-251 9.27e-91

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 268.41  E-value: 9.27e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  37 SRPDASVR--AVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFL 114
Cdd:PLN00097  27 SKARASRGpgAVAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 115 TKIGILNTPSWYTAGE-QEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKL-TGTDVGYPGGLwFDPL 192
Cdd:PLN00097 107 TKIGMADLPNWIDAAKwDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGdTNTDVGYPKGL-FDKF 185

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 186511289 193 GWGSgSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 251
Cdd:PLN00097 186 GWAK-DEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 33-255 1.98e-81

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 244.82  E-value: 1.98e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  33 VPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPE 112
Cdd:PLN00101  34 LSFKPMPSSATRSFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPE 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 113 FLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLwFDPL 192
Cdd:PLN00101 114 VFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPL 192

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 186511289 193 GWgsgspAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255
Cdd:PLN00101 193 NF-----APTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 38-255 3.54e-81

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 244.02  E-value: 3.54e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  38 RPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKI 117
Cdd:PLN00147  31 AASSGGINPVVAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVT 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 118 GILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGW 194
Cdd:PLN00147 111 GIRNLPVWYEAGAVKFeFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFfgLEAALEGLEPGYPGGPLFNPLGL 190

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 186511289 195 GSgSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255
Cdd:PLN00147 191 AK-DIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLS 250
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
61-228 2.87e-69

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 210.63  E-value: 2.87e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289   61 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTD--KT 138
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAGAVALHAQsvPT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  139 TLFVVELILIGWAEGRRWADIIKPGSVNtdpvfpnnkltGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
Cdd:pfam00504  81 LLALQILLLMGFLELARWQGGKAPGLGG-----------GGDRGYPGGFGFDPLGLAKKDPETLAELKLKELKNGRLAMI 149

                         170
                  ....*....|
gi 186511289  219 AVMGAWFQHI 228
Cdd:pfam00504 150 AFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 34-254 1.97e-60

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 191.60  E-value: 1.97e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  34 PAVSRPDAS------VRA-----VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSsDPDSL------KWNVQAEIV 96
Cdd:PLN00048  13 SSAARSSSAkkarfvVRAeatppAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLS-DPEGAggfiepQWLAYGEVI 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  97 HCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNT 167
Cdd:PLN00048  92 NGRFAMLGAAGAIAPEILGKAGLIpqeTALPWFQsgvippAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGK 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 168 DPVFPNNKLTGT--DVGYPGGLWFDPLGWGSgSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
Cdd:PLN00048 172 QYFLGLEKGLGGsgNPAYPGGPFFNPLGFGK-DEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADP 250


                 ....*....
gi 186511289 246 GHATIFAAF 254
Cdd:PLN00048 251 VNNNVLTNL 259
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 33-251 1.67e-51

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 168.13  E-value: 1.67e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  33 VPAVSRPDASVRAVAADpDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFipe 112
Cdd:PLN00100  17 SAGVSTTRRPRVRVAAR-ARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGIL--- 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 113 FLTKIGIlntPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPnnkltgtdvgypgglwFDPL 192
Cdd:PLN00100  93 FTDAVGL---PKFWEAGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFP----------------FDPT 153

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 186511289 193 GWGSgspaklKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 251
Cdd:PLN00100 154 GMDS------PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIF 206
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 50-256 1.91e-48

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 160.68  E-value: 1.91e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  50 PDRPIW---FPGSTPpEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGI-LNTPSW 125
Cdd:PLN00025  49 PDRPKYlgpFSGETP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVkFGEAVW 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 126 YTAGEQ-------EYFTDKT--------TLFVVELILIGWAEGRRwadiikpgsVNTDPVFpnnklTGTDVGYPGGLwFD 190
Cdd:PLN00025 128 FKAGAQifsegglDYLGNPSlvhaqsilAIWACQVVLMGAVEGYR---------VNGGPLG-----EGLDPLYPGGS-FD 192

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 186511289 191 PLGWGSgSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA---AFTP 256
Cdd:PLN00025 193 PLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAyatNFVP 260
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 35-257 1.66e-46

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 155.19  E-value: 1.66e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  35 AVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFL 114
Cdd:PLN00099  27 ASSVPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 115 TKIGILNTPSWYTA--GEQEYFTDKT------TLFVVELILIGWAEGRRwadiikpgSVNTDPvfpnnkltgTDVGYPGG 186
Cdd:PLN00099 107 GLGNWVKAQEWAAIpgGQATYLGNPVpwgtlpTILAIEFLAIAFVEHQR--------SMEKDP---------EKKKYPGG 169

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186511289 187 LwFDPLGWgSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
Cdd:PLN00099 170 A-FDPLGY-SKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQsAYPGTGPLENLATHLADPWHNNIGDIIIPR 239
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 34-255 6.83e-45

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 152.25  E-value: 6.83e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  34 PAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDP-------DSLKWNV--------------- 91
Cdd:PLN00187  34 KKKAAKKAKKKSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAeylqfdlDSLDQNLaknlagdvigtrtea 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  92 ---------------------QAEIVHCRWAMLGAAGIFIPEFLTKIgilntpSWYTAGEQE------YFTDK-----TT 139
Cdd:PLN00187 114 seikstpfqpysevfglqrfrECELIHGRWAMLATLGALSVEALTGV------TWQDAGKVElvdgssYLGQPlpfsiTT 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 140 LFVVELILIGWAEGRRWADIIkpgsvntdpvfPNNKLtgtdvgYPGGLWFDPLGWGSgSPAKLKELRTKEIKNGRLAMLA 219
Cdd:PLN00187 188 LIWIEVLVIGYIEFQRNAELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKETLQLAEIKHARLAMVA 249

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 186511289 220 VMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255
Cdd:PLN00187 250 FLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 51-254 1.85e-40

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 141.86  E-value: 1.85e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  51 DRPIWFpGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILN--TPSW 125
Cdd:PLN00171 107 ERPRWL-GPIPydyPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHfaEPVW 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 126 YTAGEQE--------------YFTDKTTLFVV---ELILIGWAEGRRWADIikpgsvntDPVFPNNKLTGTDVGYPGGLW 188
Cdd:PLN00171 186 WRVGYAKlqgdtldylgipglHIAGSQGVIVIaicQALLMVGPEYARYCGI--------EALEPLGIYLPGDINYPGGAL 257

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 186511289 189 FDPLGWgSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
Cdd:PLN00171 258 FDPLGL-SKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 35-226 1.22e-36

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 130.05  E-value: 1.22e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  35 AVSRPDASVRAVAADPDRPiWFPGS------TPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGI 108
Cdd:PLN00170  35 KVGARTLLVVAAAAQPKKS-WIPAVkgggnlVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 109 FIPEFLTKIgilntpSWYTAGEQEYFTDK---TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKL-------TG 178
Cdd:PLN00170 114 FVGQAWSGI------PWFEAGADPGAIAPfsfGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTaenfanaTG 187

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 186511289 179 tDVGYPGGLWFDPLGWGSGSP--------AKLKELRTKEIKNGRLAMLAVMGAWFQ 226
Cdd:PLN00170 188 -LQGYPGGKFFDPLGLAGTVKdgvyipdfEKLERLKLAEIKHARLAMVAMLIFYFE 242
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 34-233 4.14e-11

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 60.85  E-value: 4.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  34 PAVSRPDASVRAVAADPDRPIWFPGSTPpEWLDGSLPGDFGFDPLGLSSD-PDSLKWNVQAEIVHCRWAMLGAAGIFIPE 112
Cdd:PLN00089  19 AQKSRTRPATPTAAAEDDCPGAIGFAAK-EFMFIGKTGSKKFDPLGLAEKvEEFLPWFRESELKHGRAAMLAVAGFIAPD 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289 113 FLTKIG-------ILNTPSWYTAGEQEYFTDKTTLFV--VELIligwaegrrwadIIKPGSVNTdpvfpnNKLTGTdvgy 183
Cdd:PLN00089  98 FVRIPGeaysfaaIPKTIDAHDALLKSGAMIQIFAWIgfVDLA------------VSAPAAAAA------AEFDRT---- 155

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 186511289 184 PGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 233
Cdd:PLN00089 156 PGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
174-256 1.54e-10

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 58.09  E-value: 1.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511289  174 NKLTGTDVGYPGglwFDPLGWGSGsPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDnlFAHLADPGHATIFAA 253
Cdd:pfam00504   3 AYLDGSLPGDYG---FDPLGLSAD-PETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGN--EPVWFEAGAVALHAQ 76


                  ...
gi 186511289  254 FTP 256
Cdd:pfam00504  77 SVP 79
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
56-113 1.35e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 52.69  E-value: 1.35e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 186511289   56 FPGSTPPEWLDGSLPGDFGFDPLGLSS-DPDSLKWNVQAEIVHCRWAMLGAAGIFIPEF 113
Cdd:pfam00504 101 GKAPGLGGGGDRGYPGGFGFDPLGLAKkDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 164-233 3.56e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 43.58  E-value: 3.56e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 186511289 164 SVNTDPVFPNNkltgTDVGYPGGLWfDPLGWGS-GSPAKLKELRTKEIKNGRLAMLAVMGawfqHIYTGTG 233
Cdd:PLN00120  27 SVATNMAFENE----LGAQAPLGFF-DPLGLVDdGDQEKFDRLRYVEIKHGRISMLAVVG----YLVTEAG 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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