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Conserved domains on  [gi|15233112|ref|NP_191048|]
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zinc finger protein [Arabidopsis thaliana]

Protein Classification

DUF4050 domain-containing protein( domain architecture ID 82323)

DUF4050 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4050 super family cl16191
Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. ...
 24-112 3.84e-19

Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 109 and 173 amino acids in length. There are two conserved sequence motifs: IPL and FLVD.


The actual alignment was detected with superfamily member pfam13259:

Pssm-ID: 463820  Cd Length: 124  Bit Score: 76.17  E-value: 3.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233112    24 KDEKSSVKTNSENTLTLVNHGAKMWQENREKWVGDQSRQRK---------NTAKDQI--ISWSTTYEDLLSTHEPFSESI 92
Cdd:pfam13259  25 LDERRRRRRRALEEEMFWNEGLRLWNQRRDAWTGARTVRKVpkrlrespsNPIRASIppASYPAIYEKLVGQNKTPSVPI 104

                          90       100
                  ....*....|....*....|
gi 15233112    93 PLPEMVDFLVDIWYDEGLYD 112
Cdd:pfam13259 105 NLSDMVDALVDGWKQEGEWP 124
 
Name Accession Description Interval E-value
DUF4050 pfam13259
Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. ...
 24-112 3.84e-19

Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 109 and 173 amino acids in length. There are two conserved sequence motifs: IPL and FLVD.


Pssm-ID: 463820  Cd Length: 124  Bit Score: 76.17  E-value: 3.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233112    24 KDEKSSVKTNSENTLTLVNHGAKMWQENREKWVGDQSRQRK---------NTAKDQI--ISWSTTYEDLLSTHEPFSESI 92
Cdd:pfam13259  25 LDERRRRRRRALEEEMFWNEGLRLWNQRRDAWTGARTVRKVpkrlrespsNPIRASIppASYPAIYEKLVGQNKTPSVPI 104

                          90       100
                  ....*....|....*....|
gi 15233112    93 PLPEMVDFLVDIWYDEGLYD 112
Cdd:pfam13259 105 NLSDMVDALVDGWKQEGEWP 124
 
Name Accession Description Interval E-value
DUF4050 pfam13259
Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. ...
 24-112 3.84e-19

Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 109 and 173 amino acids in length. There are two conserved sequence motifs: IPL and FLVD.


Pssm-ID: 463820  Cd Length: 124  Bit Score: 76.17  E-value: 3.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233112    24 KDEKSSVKTNSENTLTLVNHGAKMWQENREKWVGDQSRQRK---------NTAKDQI--ISWSTTYEDLLSTHEPFSESI 92
Cdd:pfam13259  25 LDERRRRRRRALEEEMFWNEGLRLWNQRRDAWTGARTVRKVpkrlrespsNPIRASIppASYPAIYEKLVGQNKTPSVPI 104

                          90       100
                  ....*....|....*....|
gi 15233112    93 PLPEMVDFLVDIWYDEGLYD 112
Cdd:pfam13259 105 NLSDMVDALVDGWKQEGEWP 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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