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Conserved domains on  [gi|15231836|ref|NP_190923|]
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FBD-like domain family protein [Arabidopsis thaliana]

Protein Classification

FBD domain-containing protein( domain architecture ID 10651840)

FBD domain-containing protein may be associated with nuclear processes in plants

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
173-241 3.61e-18

domain in FBox and BRCT domain containing plant proteins;


:

Pssm-ID: 214730  Cd Length: 72  Bit Score: 76.41  E-value: 3.61e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15231836    173 ECLSNHLKIFEWKGYRGRKEEKEIVRYILANSKCLRRIGVSLKST---NNHKTIKELESMSRVSTSSHLLFS 241
Cdd:smart00579   1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSddeEKLEILKELLSLPRASSSCQVQFL 72
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
173-241 3.61e-18

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 76.41  E-value: 3.61e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15231836    173 ECLSNHLKIFEWKGYRGRKEEKEIVRYILANSKCLRRIGVSLKST---NNHKTIKELESMSRVSTSSHLLFS 241
Cdd:smart00579   1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSddeEKLEILKELLSLPRASSSCQVQFL 72
FBD pfam08387
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ...
 168-207 8.28e-18

FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors.


Pssm-ID: 462458  Cd Length: 45  Bit Score: 74.68  E-value: 8.28e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 15231836   168 PSSVPECLSNHLKIFEWKGYRGRKEEKEIVRYILANSKCL 207
Cdd:pfam08387   1 PSSVPECLLSSLETVEWRGYRGEEEEKEFAKYILENARVL 40
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
173-241 3.61e-18

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 76.41  E-value: 3.61e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15231836    173 ECLSNHLKIFEWKGYRGRKEEKEIVRYILANSKCLRRIGVSLKST---NNHKTIKELESMSRVSTSSHLLFS 241
Cdd:smart00579   1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSddeEKLEILKELLSLPRASSSCQVQFL 72
FBD pfam08387
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ...
 168-207 8.28e-18

FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors.


Pssm-ID: 462458  Cd Length: 45  Bit Score: 74.68  E-value: 8.28e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 15231836   168 PSSVPECLSNHLKIFEWKGYRGRKEEKEIVRYILANSKCL 207
Cdd:pfam08387   1 PSSVPECLLSSLETVEWRGYRGEEEEKEFAKYILENARVL 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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