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Conserved domains on  [gi|15231798|ref|NP_190904|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 22-749 1.44e-157

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 479.35  E-value: 1.44e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   22 SSVVSTIKTEELMNDHINSLCKSNFYREALEAFdfaqkNSSFKIRL----RTYISLICACSSSRSLAQGRKIHDHILNSN 97
Cdd:PLN03077  42 SVAASSSSSTHDSNSQLRALCSHGQLEQALKLL-----ESMQELRVpvdeDAYVALFRLCEWKRAVEEGSRVCSRALSSH 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   98 CKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKA 177
Cdd:PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  178 CASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHL 257
Cdd:PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  258 KEMLSFGVfHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTA 337
Cdd:PLN03077 277 FTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYT 417
Cdd:PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  418 FCSdlyCCFNLFEDFRN--NADSVSWNTILTA-CLQHeQPVEMLRLFKLMLVSeCEPDHITMGNLLRGCVEISSLKLGSQ 494
Cdd:PLN03077 436 KCK---CIDKALEVFHNipEKDVISWTSIIAGlRLNN-RCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKE 510

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  495 VHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDnRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNH 574
Cdd:PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  575 VTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKT 654
Cdd:PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  655 QGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPE 734
Cdd:PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749

                        730
                 ....*....|....*
gi 15231798  735 RDDIYTVLHNIWSQM 749
Cdd:PLN03077 750 IKEINTVLEGFYEKM 764
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 22-749 1.44e-157

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 479.35  E-value: 1.44e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   22 SSVVSTIKTEELMNDHINSLCKSNFYREALEAFdfaqkNSSFKIRL----RTYISLICACSSSRSLAQGRKIHDHILNSN 97
Cdd:PLN03077  42 SVAASSSSSTHDSNSQLRALCSHGQLEQALKLL-----ESMQELRVpvdeDAYVALFRLCEWKRAVEEGSRVCSRALSSH 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   98 CKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKA 177
Cdd:PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  178 CASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHL 257
Cdd:PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  258 KEMLSFGVfHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTA 337
Cdd:PLN03077 277 FTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYT 417
Cdd:PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  418 FCSdlyCCFNLFEDFRN--NADSVSWNTILTA-CLQHeQPVEMLRLFKLMLVSeCEPDHITMGNLLRGCVEISSLKLGSQ 494
Cdd:PLN03077 436 KCK---CIDKALEVFHNipEKDVISWTSIIAGlRLNN-RCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKE 510

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  495 VHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDnRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNH 574
Cdd:PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  575 VTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKT 654
Cdd:PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  655 QGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPE 734
Cdd:PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749

                        730
                 ....*....|....*
gi 15231798  735 RDDIYTVLHNIWSQM 749
Cdd:PLN03077 750 IKEINTVLEGFYEKM 764
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 657-717 9.95e-13

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 63.72  E-value: 9.95e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15231798   657 NVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIE 717
Cdd:pfam20431   3 NVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 338-371 1.06e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 1.06e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15231798   338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDA 371
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 618-696 4.99e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 4.99e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798 618 DLLARAGRLNEAERFIDE-MKLEPDVVVWKTLL-SACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA 695
Cdd:COG4235  25 RAYLRLGRYDEALAAYEKaLRLDPDNADALLDLaEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEA 104


                .
gi 15231798 696 A 696
Cdd:COG4235 105 I 105
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 22-749 1.44e-157

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 479.35  E-value: 1.44e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   22 SSVVSTIKTEELMNDHINSLCKSNFYREALEAFdfaqkNSSFKIRL----RTYISLICACSSSRSLAQGRKIHDHILNSN 97
Cdd:PLN03077  42 SVAASSSSSTHDSNSQLRALCSHGQLEQALKLL-----ESMQELRVpvdeDAYVALFRLCEWKRAVEEGSRVCSRALSSH 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   98 CKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKA 177
Cdd:PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  178 CASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHL 257
Cdd:PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  258 KEMLSFGVfHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTA 337
Cdd:PLN03077 277 FTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYT 417
Cdd:PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  418 FCSdlyCCFNLFEDFRN--NADSVSWNTILTA-CLQHeQPVEMLRLFKLMLVSeCEPDHITMGNLLRGCVEISSLKLGSQ 494
Cdd:PLN03077 436 KCK---CIDKALEVFHNipEKDVISWTSIIAGlRLNN-RCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKE 510

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  495 VHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDnRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNH 574
Cdd:PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  575 VTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKT 654
Cdd:PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  655 QGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPE 734
Cdd:PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749

                        730
                 ....*....|....*
gi 15231798  735 RDDIYTVLHNIWSQM 749
Cdd:PLN03077 750 IKEINTVLEGFYEKM 764
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 9-765 3.02e-101

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 327.21  E-value: 3.02e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798    9 ARVSVSNSQILATSSVVSTIKTeelMNDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRK 88
Cdd:PLN03081  68 IEVSESKDARLDDTQIRKSGVS---LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKA 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   89 IHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQ 168
Cdd:PLN03081 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  169 FAFGSIIKACASSSDVGLGKQLHAQVIKLessshliaqnaliamyvrfnqmsdasrvfygipmkdliswssiiagfsqlg 248
Cdd:PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKT--------------------------------------------------- 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  249 fefealshlkemlsfgvfhpneyifgsslkacssllrpdygsqihGLCikselaGNAIAGCSLCDMYARCGFLNSARRVF 328
Cdd:PLN03081 254 ---------------------------------------------GVV------GDTFVSCALIDMYSKCGDIEDARCVF 282

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  329 DQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGfipdaislrsllcaqtkpmalsqgmqihsyiikwgfladltv 408
Cdd:PLN03081 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG------------------------------------------ 320

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  409 cnslltmytfcsdlyccfnlfedfrnnadsvswntiltaclqheqpVEMlrlfklmlvsecepDHITMGNLLRGCVEISS 488
Cdd:PLN03081 321 ----------------------------------------------VSI--------------DQFTFSIMIRIFSRLAL 340

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  489 LKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSA 568
Cdd:PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  569 GIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTL 648
Cdd:PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAAL 500

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798  649 LSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAE 728
Cdd:PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580

                        730       740       750       760
                 ....*....|....*....|....*....|....*....|....*....
gi 15231798  729 DIFHPERDDIYTVLHNIWSQ------------MLDECNPQHKKRLQFIH 765
Cdd:PLN03081 581 DRLHPQSREIYQKLDELMKEiseygyvaeeneLLPDVDEDEEKVSGRYH 629
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 657-717 9.95e-13

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 63.72  E-value: 9.95e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15231798   657 NVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIE 717
Cdd:pfam20431   3 NVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 42-415 1.07e-12

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 71.83  E-value: 1.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798    42 CKSNfyREALEAFDFAQ--KNSSfkirLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLR 119
Cdd:PLN03218  416 CKKQ--RAVKEAFRFAKliRNPT----LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   120 DAREVFDFMP----ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQvI 195
Cdd:PLN03218  490 AMFEVFHEMVnagvEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE-M 568

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   196 KLESS----SHlIAQNALIAMYVRFNQMSDASRVF-----YGI---PMKDLISWSSIiagfSQLG-FEFeALSHLKEMLS 262
Cdd:PLN03218  569 KAETHpidpDH-ITVGALMKACANAGQVDRAKEVYqmiheYNIkgtPEVYTIAVNSC----SQKGdWDF-ALSIYDDMKK 642

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   263 FGVfHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLcdMYARCGFLN--SARRVFDQIE----RPDT 336
Cdd:PLN03218  643 KGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL--MGACSNAKNwkKALELYEDIKsiklRPTV 719

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15231798   337 ASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTM 415
Cdd:PLN03218  720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 437-661 6.38e-12

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 69.52  E-value: 6.38e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   437 DSVSWNTILTACLQhEQPVEmlRLFKLMLVSECE-----PDHITMGNLLRGCVEISSLKLGSQV----HCYSLKTglAPE 507
Cdd:PLN03218  541 DRVVFNALISACGQ-SGAVD--RAFDVLAEMKAEthpidPDHITVGALMKACANAGQVDRAKEVyqmiHEYNIKG--TPE 615

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   508 QFikNGLIDMYAKCGSLGQARRIFDSMDNRDV----VSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTA 583
Cdd:PLN03218  616 VY--TIAVNSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   584 CSHVGLVEEGLKLYATMQTEhGISPTKEHCSCVVDLLARAGRLNEAERFIDEMK---LEPDVVVWKTLLSACKTQGNVHL 660
Cdd:PLN03218  694 CSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKrlgLCPNTITYSILLVASERKDDADV 772


                  .
gi 15231798   661 A 661
Cdd:PLN03218  773 G 773
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 538-708 4.99e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 66.44  E-value: 4.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   538 DVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHgISPTKEHCSCVV 617
Cdd:PLN03218  471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALI 549

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   618 DLLARAGRLNEAERFIDEMKLE-----PDVVVWKTLLSACKTQGNVHLAQKAAENILKID----PFNSTAHVLLCSMhas 688
Cdd:PLN03218  550 SACGQSGAVDRAFDVLAEMKAEthpidPDHITVGALMKACANAGQVDRAKEVYQMIHEYNikgtPEVYTIAVNSCSQ--- 626

                         170       180
                  ....*....|....*....|
gi 15231798   689 SGNWENAALLRSSMKKHDVK 708
Cdd:PLN03218  627 KGDWDFALSIYDDMKKKGVK 646
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 537-586 1.27e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.27e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15231798   537 RDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSH 586
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 131-179 1.71e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.21  E-value: 1.71e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15231798   131 RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACA 179
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 334-380 3.56e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.05  E-value: 3.56e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15231798   334 PDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCA 380
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 437-483 4.74e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.97  E-value: 4.74e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15231798   437 DSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGC 483
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 540-570 1.62e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.15  E-value: 1.62e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15231798   540 VSWSTLIVGYAQSGFGEEALILFKEMKSAGI 570
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 338-371 1.06e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 1.06e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15231798   338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDA 371
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 529-584 1.26e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.50  E-value: 1.26e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798   529 RIFDSMDNR----DVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTAC 584
Cdd:pfam13812   1 SILREMVRDgiqlNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 618-696 4.99e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 4.99e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798 618 DLLARAGRLNEAERFIDE-MKLEPDVVVWKTLL-SACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA 695
Cdd:COG4235  25 RAYLRLGRYDEALAAYEKaLRLDPDNADALLDLaEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEA 104


                .
gi 15231798 696 A 696
Cdd:COG4235 105 I 105
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 619-708 7.68e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 7.68e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798 619 LLARAGRLNEAERFIDE-MKLEPD-VVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA- 695
Cdd:COG5010  63 LYNKLGDFEESLALLEQaLQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAk 142

                        90
                ....*....|...
gi 15231798 696 ALLRSSMKKHDVK 708
Cdd:COG5010 143 AALQRALGTSPLK 155
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 338-367 9.38e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.14  E-value: 9.38e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 15231798   338 SWNVIIAGLANNGYADEAVSVFSQMRSSGF 367
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 540-573 2.04e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.98  E-value: 2.04e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15231798   540 VSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPN 573
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 439-472 2.49e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.98  E-value: 2.49e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15231798   439 VSWNTILTACLQHEQPVEMLRLFKLMLVSECEPD 472
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 134-167 2.72e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 2.72e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15231798   134 VSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPD 167
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 619-705 3.85e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 3.85e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798 619 LLARAGRLNEAERFIDE-MKLEPD-VVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA- 695
Cdd:COG4783  13 ALLLAGDYDEAEALLEKaLELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEAl 92

                        90
                ....*....|
gi 15231798 696 ALLRSSMKKH 705
Cdd:COG4783  93 ALLEKALKLD 102
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 618-696 6.15e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 6.15e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798 618 DLLARAGRLNEAERFIDE-MKLEPD-VVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA 695
Cdd:COG4783  46 EILLQLGDLDEAIVLLHEaLELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125


                .
gi 15231798 696 A 696
Cdd:COG4783 126 I 126
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 134-164 7.52e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.44  E-value: 7.52e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15231798   134 VSYTSVITGYSQNGQGAEAIRLYLKMLQEDL 164
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 106-143 7.74e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.73  E-value: 7.74e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15231798   106 NHILSMYGKCGSLRDAREVFDFMPER----NLVSYTSVITGY 143
Cdd:pfam13041   7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGL 48
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 619-704 1.17e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 42.29  E-value: 1.17e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798 619 LLARAGRLNEAERFIDEM-KLEPD-VVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAA 696
Cdd:COG3914 155 ALRRLGRLEEAIAALRRAlELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYD 234


                ....*...
gi 15231798 697 LLRSSMKK 704
Cdd:COG3914 235 RFEELLAA 242
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
619-695 1.49e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 1.49e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15231798 619 LLARAGRLNEAERFIDE-MKLEPDVV-VWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA 695
Cdd:COG0457  51 AYLRLGRYEEALADYEQaLELDPDDAeALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 514-705 1.71e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 1.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798 514 LIDMYAKCGSLGQARRIFDSMDNRD---VVSWSTLIVGYAQSGFGEEALILFKEMksAGIEPNHVT-FVGVLTACSHVGL 589
Cdd:COG2956  48 LGNLYRRRGEYDRAIRIHQKLLERDpdrAEALLELAQDYLKAGLLDRAEELLEKL--LELDPDDAEaLRLLAEIYEQEGD 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231798 590 VEEGLKLYATMQTehgISPTKEHCSC-VVDLLARAGRLNEAERFIDE-MKLEPD-VVVWKTLLSACKTQGNVHLAQKAAE 666
Cdd:COG2956 126 WEKAIEVLERLLK---LGPENAHAYCeLAELYLEQGDYDEAIEALEKaLKLDPDcARALLLLAELYLEQGDYEEAIAALE 202

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 15231798 667 NILKIDPFNSTAHVLLCSMHASSGNWENA-ALLRSSMKKH 705
Cdd:COG2956 203 RALEQDPDYLPALPRLAELYEKLGDPEEAlELLRKALELD 242
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 334-363 3.26e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.78  E-value: 3.26e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 15231798   334 PDTASWNVIIAGLANNGYADEAVSVFSQMR 363
Cdd:pfam12854   5 PDVVTYNTLINGLCRAGRVDEAFELLDEME 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
619-695 4.70e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 4.70e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15231798 619 LLARAGRLNEAERFIDE-MKLEPDVV-VWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENA 695
Cdd:COG0457  85 ALQALGRYEEALEDYDKaLELDPDDAeALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 615-652 6.31e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.42  E-value: 6.31e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15231798   615 CVVDLLARAGRLNEAERFIDEMK---LEPDVVVWKTLLSAC 652
Cdd:pfam13041   8 TLINGYCKKGKVEEAFKLFNEMKkrgVKPNVYTYTILINGL 48
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 561-609 6.84e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.80  E-value: 6.84e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15231798   561 LFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQtEHGISPT 609
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMK-KKGIKPT 49
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 235-265 7.97e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.36  E-value: 7.97e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15231798   235 ISWSSIIAGFSQLGFEFEALSHLKEMLSFGV 265
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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