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Conserved domains on  [gi|30693547|ref|NP_190754|]
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cation exchanger 3 [Arabidopsis thaliana]

Protein Classification

calcium/proton exchanger( domain architecture ID 11489788)

calcium/proton exchanger translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase

Gene Ontology:  GO:0015369|GO:0006816|GO:0008324

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
69-433 4.92e-150

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


:

Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 431.11  E-value: 4.92e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547    69 VILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILA 148
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   149 LANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSM 228
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   229 INkMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETpVIGFWSGFAWLVGMTIVIALLSEYV 308
Cdd:TIGR00846 161 QD-MILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDSEVDDEVHEKPT-VLSPWSAAAWLVGTTIAIILLADYL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   309 VDTIEDASDSWGLSVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISLFVVPLSVIVAWILGIKMDLN 388
Cdd:TIGR00846 239 VDTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLN 318
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 30693547   389 FNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFF 433
Cdd:TIGR00846 319 FGTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
 
Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
69-433 4.92e-150

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 431.11  E-value: 4.92e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547    69 VILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILA 148
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   149 LANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSM 228
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   229 INkMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETpVIGFWSGFAWLVGMTIVIALLSEYV 308
Cdd:TIGR00846 161 QD-MILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDSEVDDEVHEKPT-VLSPWSAAAWLVGTTIAIILLADYL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   309 VDTIEDASDSWGLSVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISLFVVPLSVIVAWILGIKMDLN 388
Cdd:TIGR00846 239 VDTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLN 318
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 30693547   389 FNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFF 433
Cdd:TIGR00846 319 FGTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
ChaA COG0387
Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];
75-434 8.78e-73

Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];


Pssm-ID: 440156 [Multi-domain]  Cd Length: 362  Bit Score: 233.51  E-value: 8.78e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547  75 LTLLFLAIPLAILA----NSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALA 150
Cdd:COG0387   8 LPLLLLFVPIAALAlfllHGGRWGPVLVFILAALAIIPLAFAAVHHAEVLAHRLGEPFGGLLLATFGNAIEVILIISAML 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 151 --NNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIanIRREQRFDRKQADVNFFLLLMGLLCHLLP-LLLKYAATGEVSTS 227
Cdd:COG0387  88 agEELPTLVRDTIFGAIMINLNGVLGLSLLLGGL--RHKEQEFNLQGARAYLSVLIPLAVLALVLpNFTTSTPGPTFSTA 165
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 228 ---MInkmsltlsrtsSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETPVIGFWsgFAWLVGMTIVIALL 304
Cdd:COG0387 166 qliFV-----------AIVLLVLYGLFLLFQTVTHRDYFLPEDEGEEDEDEHEEPPSKWSLLLS--LGLLLVALVAVVLL 232
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 305 SEYVVDTIEDASDSWGLSVSFISIILlPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISLFVVPLSVIVAWILGIK 384
Cdd:COG0387 233 SEILVGSIEEAVEALGLPEAFVGVII-AILVLAPEGLTAVRAARKNRLQLSLNIALGSALASIGLTIPALVLISLLTGQP 311
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|
gi 30693547 385 MDLNFNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFFV 434
Cdd:COG0387 312 LTLGFNPFELVLLALTVLVSNLTFSDGRTNWLEGAVHLALFAIYAFLFFF 361
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
289-434 3.47e-15

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 72.64  E-value: 3.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   289 SGFAWLVGMTIVIALLSEYVVDTIEDASDSWGLSVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISL 368
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30693547   369 FVVPLSVIVAWIL--GIKMDLNFNILETSSLALAIIITAFTLQD-GTSHYMKGLVLLLCYVIIAACFFV 434
Cdd:pfam01699  81 LVLGLSALIGPVKvdSLLLKLDLGVLLLVALLLLLLLLLLLLPLfGRLSRFEGLVLLLLYIVYLVFQIV 149
 
Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
69-433 4.92e-150

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 431.11  E-value: 4.92e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547    69 VILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILA 148
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   149 LANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSM 228
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   229 INkMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETpVIGFWSGFAWLVGMTIVIALLSEYV 308
Cdd:TIGR00846 161 QD-MILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDSEVDDEVHEKPT-VLSPWSAAAWLVGTTIAIILLADYL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   309 VDTIEDASDSWGLSVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISLFVVPLSVIVAWILGIKMDLN 388
Cdd:TIGR00846 239 VDTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLN 318
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 30693547   389 FNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFF 433
Cdd:TIGR00846 319 FGTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
cax TIGR00378
calcium/proton exchanger (cax); [Transport and binding proteins, Cations and iron carrying ...
78-433 1.96e-78

calcium/proton exchanger (cax); [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273043 [Multi-domain]  Cd Length: 349  Bit Score: 247.85  E-value: 1.96e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547    78 LFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVV 157
Cdd:TIGR00378   1 LLVFVPLSVIGSLMHWPSTVLFAVYCLAIIPLAAYMGRATEELAIIAGPRIGGLLNATFGNAVELIISIIALKEGLTGIV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   158 KYSLLGSILSNLLLVLGTSLFFGGIAniRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSMINkmsltLS 237
Cdd:TIGR00378  81 LASLTGSVLGNLLLVAGLSFFVGGLK--YKRQEFNIHAARHNSSLLIFAIVAFLIPAAFEVFSVGMENASKLN-----LS 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   238 RTSSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETPVIGFWSGFAWLVGMTIVIALLSEYVVDTIEDASD 317
Cdd:TIGR00378 154 IGISIVMILVYVLALYFKLGTHRGLYQPNNAEQTEEMEEIEREPEHSWSGKVATIVLLAATIVVAYISENLVGTFHSVAE 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   318 SWGLSVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISLFVVPLSVIVAWILGIKMDLNFNILETSSL 397
Cdd:TIGR00378 234 SFGLSELFIGVIVVPIVGNAAEHATAVIVAMKDKMDLAVEVAVGSSLQIAMFVAPVLVIVGWFIPTPMPLNFTLFELVAM 313
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 30693547   398 ALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFF 433
Cdd:TIGR00378 314 VSAVLLMNAISNDGDSNWLEGATLLAAYVIMAIAFF 349
ChaA COG0387
Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];
75-434 8.78e-73

Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];


Pssm-ID: 440156 [Multi-domain]  Cd Length: 362  Bit Score: 233.51  E-value: 8.78e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547  75 LTLLFLAIPLAILA----NSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALA 150
Cdd:COG0387   8 LPLLLLFVPIAALAlfllHGGRWGPVLVFILAALAIIPLAFAAVHHAEVLAHRLGEPFGGLLLATFGNAIEVILIISAML 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 151 --NNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIanIRREQRFDRKQADVNFFLLLMGLLCHLLP-LLLKYAATGEVSTS 227
Cdd:COG0387  88 agEELPTLVRDTIFGAIMINLNGVLGLSLLLGGL--RHKEQEFNLQGARAYLSVLIPLAVLALVLpNFTTSTPGPTFSTA 165
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 228 ---MInkmsltlsrtsSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETPVIGFWsgFAWLVGMTIVIALL 304
Cdd:COG0387 166 qliFV-----------AIVLLVLYGLFLLFQTVTHRDYFLPEDEGEEDEDEHEEPPSKWSLLLS--LGLLLVALVAVVLL 232
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 305 SEYVVDTIEDASDSWGLSVSFISIILlPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISLFVVPLSVIVAWILGIK 384
Cdd:COG0387 233 SEILVGSIEEAVEALGLPEAFVGVII-AILVLAPEGLTAVRAARKNRLQLSLNIALGSALASIGLTIPALVLISLLTGQP 311
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|
gi 30693547 385 MDLNFNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFFV 434
Cdd:COG0387 312 LTLGFNPFELVLLALTVLVSNLTFSDGRTNWLEGAVHLALFAIYAFLFFF 361
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
110-427 3.64e-16

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 78.64  E-value: 3.64e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 110 AERVSFLTEQLAFYTG--PTVGGLLNATCGNAT-ELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIaNIR 186
Cdd:COG0530   1 ADLLVRGADALARRLGisPLVIGLTIVAFGTSLpELAVSVTAALDGSPDIAVGNVVGSNIANILLILGLAALIRPL-AVD 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 187 ReqrfDRKQADVNFFLLLMGLLCHLLplllkyaatgevstsminkMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQlfeaq 266
Cdd:COG0530  80 R----RVLRRDLPFLLLASLLLLALL-------------------LDGTLSRIDGVILLLLYVLYLYYLIRRARK----- 131
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 267 qdDDDAYDDEVSVEETPVIGFWSGFAWLVGMTIVIALLSEYVVDTIEDASDSWGLSVSFISIILLPIVGNAAEHAGAIIF 346
Cdd:COG0530 132 --EPAWEEVEEELEEKPKMSLWKALLLLVLGLALLVVGARLLVDGAVEIARALGVSELVIGLTIVAIGTSLPELATSIVA 209
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547 347 AFKNKLDISLGVALGSATQISLFVVPLSVIVAWILGIKMDLNFNILetSSLALAIIITAFTLQDGTSHYMKGLVLLLCYV 426
Cdd:COG0530 210 ARKGEDDLAVGNIIGSNIFNILLVLGIGALITPIPVDPAVLSFDLP--VMLAATLLLLGLLRTGGRIGRWEGLLLLALYL 287

                .
gi 30693547 427 I 427
Cdd:COG0530 288 A 288
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
289-434 3.47e-15

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 72.64  E-value: 3.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   289 SGFAWLVGMTIVIALLSEYVVDTIEDASDSWGLSVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISL 368
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30693547   369 FVVPLSVIVAWIL--GIKMDLNFNILETSSLALAIIITAFTLQD-GTSHYMKGLVLLLCYVIIAACFFV 434
Cdd:pfam01699  81 LVLGLSALIGPVKvdSLLLKLDLGVLLLVALLLLLLLLLLLLPLfGRLSRFEGLVLLLLYIVYLVFQIV 149
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
96-257 4.99e-09

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 54.92  E-value: 4.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547    96 PLIFGLSLIGLTPLAERVSFLTEQLAFYTG---PTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLV 172
Cdd:pfam01699   3 LLLFILGLLLISVAADLLVDSAEVLARVLGisgTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNILLV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693547   173 LGTSLFFGGIANIRREQRFdrkqaDVNFFLLLMGLLCHLLPLLLKyaatgevstsminKMSLTLSRTSSIVMLIAYIAYL 252
Cdd:pfam01699  83 LGLSALIGPVKVDSLLLKL-----DLGVLLLVALLLLLLLLLLLL-------------PLFGRLSRFEGLVLLLLYIVYL 144

                  ....*
gi 30693547   253 IFQLW 257
Cdd:pfam01699 145 VFQIV 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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