|
Name |
Accession |
Description |
Interval |
E-value |
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
588-809 |
8.86e-100 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 310.21 E-value: 8.86e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYqgrdGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVC 667
Cdd:cd03263 5 NLTKTY----KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 668 PQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMD 747
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD--KANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 748 EPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 809
Cdd:cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
584-812 |
4.15e-84 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 269.63 E-value: 4.15e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS 663
Cdd:COG1131 1 IEVRGLTKRYGD------KTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKV 743
Cdd:COG1131 75 IGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGL--TDAADRKVGTLSGGMKQRLGLALALLHDPEL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRY 812
Cdd:COG1131 153 LILDEPTSGLDPEARRELWELLRElAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
603-899 |
5.33e-75 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 247.69 E-value: 5.33e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 603 LAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCPQHDLLWETLTGKEH 682
Cdd:TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLFYGRLKNLKGHDLNQAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLW 762
Cdd:TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEA--ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 763 TVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSyvlTITTSPEHEKDVETLVQEVSSN- 840
Cdd:TIGR01188 165 DYIRALKEEGvTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKD---TLESRPRDIQSLKVEVSMLIAEl 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 841 ------ARKIYHIAGTQKFEFPKEEVRISEVFQAVenAKRNFTVFAWGFADTTLEDVFIKVakTG 899
Cdd:TIGR01188 242 getglgLLAVTVDSDRIKILVPDGDETVPEIVEAA--IRNGIRIRSISTERPSLDDVFLKL--TG 302
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
584-809 |
3.08e-73 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 239.58 E-value: 3.08e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgrDGNppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS 663
Cdd:cd03265 1 IEVENLVKKY---GDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKV 743
Cdd:cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGL--LEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKRAKKHAA--IILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 809
Cdd:cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGmtILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
315-897 |
6.08e-61 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 226.43 E-value: 6.08e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 315 PIFFTWVILLLFPVILTSLVYEKQQRLRIIMKMHGLGDAPYWMISYAYFLAISTLYIVCLMIFgsAIGLKFFRFNDYTIQ 394
Cdd:TIGR01257 656 PIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIF--IMHGRILHYSDPFIL 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 395 FMFYFLYINLQISIAFLVSSAFSKAVTASVVayiyvfgSGLLgaFLFQFLIESLSFPRRWIFVMELYPGFSLYRGL-YEF 473
Cdd:TIGR01257 734 FLFLLAFSTATIMQCFLLSTFFSKASLAAAC-------SGVI--YFTLYLPHILCFAWQDRMTADLKTAVSLLSPVaFGF 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 474 SQYAFQRNLNGRDGMKWKDFRGSAM--DEVFTIIIVEWVVALVATY-----YIDRVSSSSKDT----FAFLKNPFKLSPt 542
Cdd:TIGR01257 805 GTEYLVRFEEQGLGLQWSNIGNSPLegDEFSFLLSMKMMLLDAALYgllawYLDQVFPGDYGTplpwYFLLQESYWLGG- 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 543 pQMLSFQKERSDVSVE--MEKLDVIQEKETVKQLIFERSKNH---GIVCDNLKKVYQGRdGNPpklAVCGLSLAVPSGEC 617
Cdd:TIGR01257 884 -EGCSTREERALEKTEplTEEMEDPEHPEGINDSFFERELPGlvpGVCVKNLVKIFEPS-GRP---AVDRLNITFYENQI 958
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 618 FGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDL 697
Cdd:TIGR01257 959 TAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA 1038
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 698 NQAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILT 777
Cdd:TIGR01257 1039 QLEMEAMLEDTGLHHK--RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMS 1116
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 778 THSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLTI--------------------------TTSPEHEKDV- 830
Cdd:TIGR01257 1117 THHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLvrkmkniqsqrggcegtcsctskgfsTRCPARVDEIt 1196
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 831 --ETLVQEVSSNARKIYHIAGTQK----------FEFPKEEVR---ISEVFQAVENAKRNFTVFAWGFADTTLEDVFIKV 895
Cdd:TIGR01257 1197 peQVLDGDVNELMDLVYHHVPEAKlvecigqeliFLLPNKNFKqraYASLFRELEETLADLGLSSFGISDTPLEEIFLKV 1276
|
..
gi 22331655 896 AK 897
Cdd:TIGR01257 1277 TE 1278
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
584-799 |
6.86e-61 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 204.17 E-value: 6.86e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS 663
Cdd:cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLlfygrlknlkghdlnqaveeslksvnlfhggvadipagKYSGGMKRRLSVAISLIGSPKV 743
Cdd:cd03230 75 IGYLPEEPSLYENLTVRENL--------------------------------------KLSGGMKQRLALAQALLHDPEL 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:cd03230 117 LILDEPTSGLDPESRREFWELLRElKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
560-897 |
2.45e-59 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 221.81 E-value: 2.45e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 560 EKLDVIQEKEtvkQLIFERSKNHGIVCDNLKKVYQGrDGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLV 639
Cdd:TIGR01257 1917 EDDDVAEERQ---RIISGGNKTDILRLNELTKVYSG-TSSP---AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT 1989
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 640 KPSSGSAFVQGLDICKDMDKVYISMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIP 719
Cdd:TIGR01257 1990 TVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL--SLYADRL 2067
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 720 AGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLW-TVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:TIGR01257 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWnTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGA 2147
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 799 LQCIGNPKELKGRYGGSYVLTITT-SPEHE--KDVETLVQEVSSN-----ARKIYHiaGTQKFEFPKEEvrISEVFQAVE 870
Cdd:TIGR01257 2148 FQCLGTIQHLKSKFGDGYIVTMKIkSPKDDllPDLNPVEQFFQGNfpgsvQRERHY--NMLQFQVSSSS--LARIFQLLI 2223
|
330 340
....*....|....*....|....*..
gi 22331655 871 NAKRNFTVFAWGFADTTLEDVFIKVAK 897
Cdd:TIGR01257 2224 SHKDSLLIEEYSVTQTTLDQVFVNFAK 2250
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
584-815 |
1.28e-54 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 189.30 E-value: 1.28e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS 663
Cdd:COG4555 2 IEVENLSKKYGK------VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKV 743
Cdd:COG4555 76 IGVLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGL--EEFLDRRVGELSTGMKKKVALARALVHDPKV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGS 815
Cdd:COG4555 154 LLLDEPTNGLDVMARRLLREILRALKKEgKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEE 226
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
584-800 |
1.32e-50 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 177.00 E-value: 1.32e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgrdgnPPKLAVCGLSLAVPSGeCFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS 663
Cdd:cd03264 1 LQLENLTKRY------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKV 743
Cdd:cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL--GDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQ 800
Cdd:cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
584-799 |
4.06e-50 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 176.02 E-value: 4.06e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS 663
Cdd:cd03266 2 ITADALTKRF--RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKV 743
Cdd:cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE--LLDRRVGGFSTGMRQKVAIARALVHDPPV 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGkCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
588-862 |
1.94e-47 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 172.71 E-value: 1.94e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVC 667
Cdd:PRK13536 46 GVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 668 PQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMD 747
Cdd:PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL--ESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 748 EPSTGLDPASRINLW----TVIKRAKkhaAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLTITTS 823
Cdd:PRK13536 198 EPTTGLDPHARHLIWerlrSLLARGK---TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGG 274
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 22331655 824 PEHEkdvetLVQEVSSNARKIyHIAGTQKFEFPK--EEVRI 862
Cdd:PRK13536 275 DPHE-----LSSLVKPYARRI-EVSGETLFCYAPdpEQVRV 309
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
602-808 |
3.48e-46 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 168.06 E-value: 3.48e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCPQHDLLWETLTGKE 681
Cdd:PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 682 HLLFYGRLKNLKGHDLNQAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:PRK13537 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 22331655 762 W----TVIKRAKkhaAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13537 178 WerlrSLLARGK---TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
584-779 |
4.87e-43 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 155.33 E-value: 4.87e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS 663
Cdd:COG4133 3 LEAENLSCRRGER------LLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDlnQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKV 743
Cdd:COG4133 77 LAYLGHADGLKPELTVRENLRFWAALYGLRADR--EAIDEALEAVGL--AGLADLPVRQLSAGQKRRVALARLLLSPAPL 152
|
170 180 190
....*....|....*....|....*....|....*..
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTH 779
Cdd:COG4133 153 WLLDEPFTALDAAGVALLAELIAAHLARgGAVLLTTH 189
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
587-897 |
7.25e-43 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 157.96 E-value: 7.25e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYqgrdGNppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-KDMDKV----- 660
Cdd:COG4152 5 KGLTKRF----GD--KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDpEDRRRIgylpe 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 661 ----YISMGVcpqhdllwetltgKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAIS 736
Cdd:COG4152 79 erglYPKMKV-------------GEQLVYLARLKGLSKAEAKRRADEWLERLGL--GDRANKKVEELSKGNQQKVQLIAA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 737 LIGSPKVVYMDEPSTGLDPasrIN---LWTVIK-RAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRY 812
Cdd:COG4152 144 LLHDPELLILDEPFSGLDP---VNvelLKDVIReLAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQF 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 813 GG-SYVLTITTSPEHEKDVETlVQEVSSNARKIyhiagtqKFEFPKEEVrISEVFQAvenAKRNFTVFAWGFADTTLEDV 891
Cdd:COG4152 221 GRnTLRLEADGDAGWLRALPG-VTVVEEDGDGA-------ELKLEDGAD-AQELLRA---LLARGPVREFEEVRPSLNEI 288
|
....*.
gi 22331655 892 FIKVAK 897
Cdd:COG4152 289 FIEVVG 294
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
588-799 |
1.15e-38 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 143.13 E-value: 1.15e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYISMGVC 667
Cdd:cd03268 5 DLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-QKNIEALRRIGAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 668 PQHDLLWETLTGKEHLLFYGRLKNLKghdlNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMD 747
Cdd:cd03268 78 IEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGL--KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 22331655 748 EPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:cd03268 152 EPTNGLDPDGIKELRELILSlRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
584-808 |
1.18e-38 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 143.63 E-value: 1.18e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-KDMDKVYI 662
Cdd:COG1122 1 IELENLSFSYPGG-----TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITkKNLRELRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMGVCPQHdllwetltgKEHLLF---------YGrLKNLK--GHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRL 731
Cdd:COG1122 76 KVGLVFQN---------PDDQLFaptveedvaFG-PENLGlpREEIRERVEEALELVGLEH--LADRPPHELSGGQKQRV 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 732 SVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG1122 144 AIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
588-798 |
3.61e-37 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 138.57 E-value: 3.61e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQgrdgnpPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMD-KVYISMGV 666
Cdd:cd03269 5 NVTKRFG------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG----KPLDiAARNRIGY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 667 CPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYM 746
Cdd:cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL--SEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 747 DEPSTGLDPASRINLWTVI---KRAKKhaAIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:cd03269 153 DEPFSGLDPVNVELLKDVIrelARAGK--TVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
588-799 |
4.95e-36 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 135.99 E-value: 4.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQGRDgnppklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-KDMDKVyismGV 666
Cdd:TIGR03740 5 NLSKRFGKQT------AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTrKDLHKI----GS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 667 CPQHDLLWETLTGKEhllfygrlkNLKGHDLNQAVEES-----LKSVNLFHGGVAdiPAGKYSGGMKRRLSVAISLIGSP 741
Cdd:TIGR03740 75 LIESPPLYENLTARE---------NLKVHTTLLGLPDSridevLNIVDLTNTGKK--KAKQFSLGMKQRLGIAIALLNHP 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 742 KVVYMDEPSTGLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGiTVILSSHILSEVQQLADHIGIISEGVL 202
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
607-809 |
8.16e-36 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 135.88 E-value: 8.16e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDKVYISMGVCPQHDLLWETLTGKEH 682
Cdd:COG1127 23 GVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITglseKELYELRRRIGMLFQGGALFDSLTVFEN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLFYGR-LKNLKGHDLNQAVEESLKSVNLfhGGVADipagKY----SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPAS 757
Cdd:COG1127 103 VAFPLReHTDLSEAEIRELVLEKLELVGL--PGAAD----KMpselSGGMRKRVALARALALDPEILLYDEPTAGLDPIT 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 22331655 758 RINLWTVIKRAKK--HAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 809
Cdd:COG1127 177 SAVIDELIRELRDelGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELL 230
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
607-798 |
2.49e-34 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 128.52 E-value: 2.49e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS-MGVCPQhdllwetltgkehllf 685
Cdd:cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRrIGYVPQ---------------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 686 ygrlknlkghdlnqaveeslksvnlfhggvadipagkYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVI 765
Cdd:cd00267 81 -------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123
|
170 180 190
....*....|....*....|....*....|....
gi 22331655 766 KR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:cd00267 124 RElAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
584-815 |
3.82e-34 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 131.36 E-value: 3.82e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKV-YI 662
Cdd:COG1121 7 IELENLTVSYGGR------PVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRRIgYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 smgvcPQH-DLLWET-LTGKE--------HLlfyGRLKNLKGHDlNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLS 732
Cdd:COG1121 81 -----PQRaEVDWDFpITVRDvvlmgrygRR---GLFRRPSRAD-REAVDEALERVGL--EDLADRPIGELSGGQQQRVL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 733 VAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLgIFVDGRLQCIGNPKE---- 807
Cdd:COG1121 150 LARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREgKTILVVTHDLGAVREYFDRV-LLLNRGLVAHGPPEEvltp 228
|
250
....*....|
gi 22331655 808 --LKGRYGGS 815
Cdd:COG1121 229 enLSRAYGGP 238
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
584-808 |
1.38e-33 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 129.20 E-value: 1.38e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKD-MDK-VY 661
Cdd:cd03218 1 LRAENLSKRYGKR------KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLpMHKrAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 ISMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSP 741
Cdd:cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH--LRKSKASSLSGGERRRVEIARALATNP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 742 KVVYMDEPSTGLDPASRINLWTVIKRAK-KHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKdRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
607-809 |
1.66e-33 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 129.16 E-value: 1.66e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDKVYISMGVCPQHDLLWETLTGKEH 682
Cdd:cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISglseAELYRLRRRMGMLFQSGALFDSLTVFEN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLFYGRLK-NLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:cd03261 98 VAFPLREHtRLSEEEIREIVLEKLEAVGL--RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 22331655 762 WTVIKRAKKH--AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 809
Cdd:cd03261 176 DDLIRSLKKElgLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
584-794 |
2.97e-33 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 127.97 E-value: 2.97e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVYIS 663
Cdd:cd03293 1 LEVRNVSKTY--GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADipagKY----SGGMKRRLSVAISLIG 739
Cdd:cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL--SGFEN----AYphqlSGGMRQRVALARALAV 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 740 SPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIF 794
Cdd:cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
587-803 |
3.48e-33 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 127.25 E-value: 3.48e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDM-DKVYISMg 665
Cdd:cd03259 4 KGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPpERRNIGM- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 666 vCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVY 745
Cdd:cd03259 77 -VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG--LLNRYPHELSGGQQQRVALARALAREPSLLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 746 MDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 803
Cdd:cd03259 154 LDEPLSALDAKLREELREELKElqRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
585-798 |
6.64e-33 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 126.43 E-value: 6.64e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 585 VCDNLKKVYQGRDgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYIS 663
Cdd:cd03225 1 ELKNLSFSYPDGA----RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKlSLKELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVC---PQHDLLWETLTgkEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGS 740
Cdd:cd03225 77 VGLVfqnPDDQFFGPTVE--EEVAFGLENLGLPEEEIEERVEEALELVGL--EGLRDRSPFTLSGGQKQRVAIAGVLAMD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 741 PKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKlKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
584-808 |
8.00e-33 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 127.39 E-value: 8.00e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDK-VY 661
Cdd:TIGR04406 2 LVAENLIKSYKKR------KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHlPMHErAR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 ISMGVCPQHDLLWETLTGKEHLL-FYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGS 740
Cdd:TIGR04406 76 LGIGYLPQEASIFRKLTVEENIMaVLEIRKDLDRAEREERLEALLEEFQISH--LRDNKAMSLSGGERRRVEIARALATN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 741 PKVVYMDEPSTGLDPASRINLWTVIKRAK-KHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:TIGR04406 154 PKFILLDEPFAGVDPIAVGDIKKIIKHLKeRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEI 222
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
604-807 |
1.28e-32 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 126.40 E-value: 1.28e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-KDMDKVyISMGVCP--QHDLLWETLT-- 678
Cdd:cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITgLPPHEI-ARLGIGRtfQIPRLFPELTvl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 679 ----------GKEHLLFYGRLKNLKghDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDE 748
Cdd:cd03219 94 envmvaaqarTGSGLLLARARREER--EARERAEELLERVGL--ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 749 PSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:cd03219 170 PAAGLNPEETEELAELIRElRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
584-795 |
1.58e-32 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 127.13 E-value: 1.58e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGnpPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVyis 663
Cdd:COG1116 8 LELRGVSKRFPTGGG--GVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDR--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 mGVCPQHDLL--WetLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADipagKY----SGGMKRRLSVAISL 737
Cdd:COG1116 83 -GVVFQEPALlpW--LTVLDNVALGLELRGVPKAERRERARELLELVGL--AGFED----AYphqlSGGMRQRVAIARAL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 738 IGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRlgIFV 795
Cdd:COG1116 154 ANDPEVLLMDEPFGALDALTRERLQDELLRlwQETGKTVLFVTHDVDEAVFLADR--VVV 211
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
584-891 |
3.25e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 127.90 E-value: 3.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGNPP---------------KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFV 648
Cdd:COG4586 2 IEVENLSKTYRVYEKEPGlkgalkglfrreyreVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 649 QGLDICKD-MDKVY-IS--MGvcpQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEEsLksVNLFH-GGVADIPAGKY 723
Cdd:COG4586 82 LGYVPFKRrKEFARrIGvvFG---QRSQLWWDLPAIDSFRLLKAIYRIPDAEYKKRLDE-L--VELLDlGELLDTPVRQL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 724 SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLgIFVD-GRLQ 800
Cdd:COG4586 156 SLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEynRERGTTILLTSHDMDDIEALCDRV-IVIDhGRII 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 801 CIGNPKELKGRYGGSYVLTITTS-PEHEKDVETLVQEVSSNARKIyhiagtqKFEFPKEEvRISEVFQAV--ENAKRNFT 877
Cdd:COG4586 235 YDGSLEELKERFGPYKTIVLELAePVPPLELPRGGEVIEREGNRV-------RLEVDPRE-SLAEVLARLlaRYPVRDLT 306
|
330
....*....|....
gi 22331655 878 VfawgfADTTLEDV 891
Cdd:COG4586 307 I-----EEPPIEEV 315
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
584-800 |
7.06e-32 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 124.37 E-value: 7.06e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGNP---------------PKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFV 648
Cdd:cd03267 1 IEVSNLSKSYRVYSKEPgligslkslfkrkyrEVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 649 QGLDICKDMDKVYISMG-VCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGM 727
Cdd:cd03267 81 AGLVPWKRRKKFLRRIGvVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDL--EELLDTPVRQLSLGQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 728 KRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQ 800
Cdd:cd03267 159 RMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEynRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
581-808 |
2.05e-31 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 123.22 E-value: 2.05e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 581 NHGIVCDNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGK-TSFiNMMTGLVKPSSGSAFVQGLDICKD-MD 658
Cdd:COG1137 1 MMTLEAENLVKSYGKR------TVVKDVSLEVNQGEIVGLLGPNGAGKtTTF-YMIVGLVKPDSGRIFLDGEDITHLpMH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 659 K-VYISMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISL 737
Cdd:COG1137 74 KrARLGIGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITH--LRKSKAYSLSGGERRRVEIARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 738 IGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG1137 152 ATNPKFILLDEPFAGVDPIAVADIQKIIRHLKERgIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
607-751 |
3.39e-31 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 119.29 E-value: 3.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVY-ISMGVCPQHDLLWETLTGKEHLLF 685
Cdd:pfam00005 3 NVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLrKEIGYVFQDPQLFPRLTVRENLRL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 686 YGRLKNLKGHDLNQAVEESLKSVNLFHGG--VADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPST 751
Cdd:pfam00005 83 GLLLKGLSKREKDARAEEALEKLGLGDLAdrPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
586-790 |
4.08e-30 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 118.40 E-value: 4.08e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 586 CDNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVyismG 665
Cdd:cd03235 2 VEDLTVSYGGH------PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI----G 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 666 VCPQH-DLLWE-TLTGKEHLL--FYGRLKNLK--GHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIG 739
Cdd:cd03235 72 YVPQRrSIDRDfPISVRDVVLmgLYGHKGLFRrlSKADKAKVDEALERVGLSE--LADRQIGELSGGQQQRVLLARALVQ 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 22331655 740 SPKVVYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDR 790
Cdd:cd03235 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREgMTILVVTHDLGLVLEYFDR 201
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
584-808 |
5.26e-30 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 118.88 E-value: 5.26e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVYI- 662
Cdd:cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG----KDITNLPPh 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 --SMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGS 740
Cdd:cd03300 71 krPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL--EGYANRKPSQLSGGQQQRVAIARALVNE 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 741 PKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGItfVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
584-808 |
5.68e-30 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 118.94 E-value: 5.68e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYI- 662
Cdd:cd03295 1 IEFENVTKRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI-REQDPVELr 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 -SMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHGGVADIPAGKYSGGMKRRLSVAISLIGSP 741
Cdd:cd03295 75 rKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 742 KVVYMDEPSTGLDPASRINLWTVIKRAKK--HAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQelGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
584-799 |
6.17e-30 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 118.36 E-value: 6.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI--CKDMDKVY 661
Cdd:cd03255 1 IELKNLSKTYGG--GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIskLSEKELAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 I---SMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLI 738
Cdd:cd03255 79 FrrrHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL--GDRLNHYPSELSGGQQQRVAIARALA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFlCDRLGIFVDGRL 799
Cdd:cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRElnKEAGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
587-799 |
1.28e-29 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 117.61 E-value: 1.28e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRDGNPPklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKV------ 660
Cdd:cd03257 5 KNLSVSFPTGGGSVK--ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLrkirrk 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 661 YISM-------GVCPQH---DLLWETltgkehLLFYGRLKNLKghDLNQAVEESLKSVNLfhggVADIpAGKY----SGG 726
Cdd:cd03257 83 EIQMvfqdpmsSLNPRMtigEQIAEP------LRIHGKLSKKE--ARKEAVLLLLVGVGL----PEEV-LNRYphelSGG 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 727 MKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH--AAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElgLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
584-808 |
1.60e-29 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 118.22 E-value: 1.60e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDgnppklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYIS 663
Cdd:COG1120 2 LEAENLSVGYGGRP------VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDL-ASLSRRELA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 --MGVCPQHDLLWETLTGKEhLLFYGR------LKNLKGHDLnQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAI 735
Cdd:COG1120 75 rrIAYVPQEPPAPFGLTVRE-LVALGRyphlglFGRPSAEDR-EAVEEALERTGLEH--LADRPVDELSGGERQRVLIAR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 736 SLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG1120 151 ALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRlaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV 225
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
584-808 |
2.30e-29 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 118.32 E-value: 2.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQgrDGNP-PKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDmDKVYI 662
Cdd:TIGR04521 1 IKLKNVSYIYQ--PGTPfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAK-KKKKL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 S-----MGVC---PQHDLLWETLtGKEhlLFYGrLKNLK--GHDLNQAVEESLKSVNLfHGGVADIPAGKYSGGMKRRls 732
Cdd:TIGR04521 78 KdlrkkVGLVfqfPEHQLFEETV-YKD--IAFG-PKNLGlsEEEAEERVKEALELVGL-DEEYLERSPFELSGGQMRR-- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 733 VAIS--LIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:TIGR04521 151 VAIAgvLAMEPEVLILDEPTAGLDPKGRKEILDLFKRlhKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREV 230
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
604-807 |
2.44e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 117.83 E-value: 2.44e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI-CKDMDKVYiSMGVCP--QHDLLWETLTGK 680
Cdd:COG0411 19 AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDItGLPPHRIA-RLGIARtfQNPRLFPELTVL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 681 EHLL----------FYGRLKNLKG-----HDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVY 745
Cdd:COG0411 98 ENVLvaaharlgrgLLAALLRLPRarreeREARERAEELLERVGL--ADRADEPAGNLSYGQQRRLEIARALATEPKLLL 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22331655 746 MDEPSTGLDPASRINLWTVIKRAKKHA--AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:COG0411 176 LDEPAAGLNPEETEELAELIRRLRDERgiTILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAE 239
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
584-808 |
3.32e-29 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 119.82 E-value: 3.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVYIS 663
Cdd:COG3842 6 LELENVSKRYGD------VTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDG----RDVTGLPPE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 ---MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRlsVAI--SLI 738
Cdd:COG3842 76 krnVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGL--EGLADRYPHQLSGGQQQR--VALarALA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG3842 152 PEPRVLLLDEPLSALDAKLREEMREELRRLQRELGItfIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
503-808 |
3.40e-29 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 123.09 E-value: 3.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 503 TIIIVEWVVALVATYyIDRVSSSSK-------DTFAFLKNPFKLSPTPQMLSFQKERSDVSVEMEKLdviqeketvkqli 575
Cdd:COG1123 195 TVLLITHDLGVVAEI-ADRVVVMDDgrivedgPPEEILAAPQALAAVPRLGAARGRAAPAAAAAEPL------------- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 576 fersknhgIVCDNLKKVYQGRDGNPPKlAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC- 654
Cdd:COG1123 261 --------LEVRNLSKRYPVRGKGGVR-AVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTk 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 655 ---KDMDKVYISMGVCPQH------------DLLWETLTgkehllfygRLKNLKGHDLNQAVEESLKSVNLfHGGVADIP 719
Cdd:COG1123 332 lsrRSLRELRRRVQMVFQDpysslnprmtvgDIIAEPLR---------LHGLLSRAERRERVAELLERVGL-PPDLADRY 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 720 AGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR---INLwtvIK--RAKKHAAIILTTHSMEEAEFLCDRLGIF 794
Cdd:COG1123 402 PHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQaqiLNL---LRdlQRELGLTYLFISHDLAVVRYIADRVAVM 478
|
330
....*....|....
gi 22331655 795 VDGRLQCIGNPKEL 808
Cdd:COG1123 479 YDGRIVEDGPTEEV 492
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
604-838 |
8.96e-29 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 118.68 E-value: 8.96e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFInMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVC-PQHDLLWETLTGKEH 682
Cdd:NF000106 28 AVDGVDLDVREGTVLGVLGP*GAA**RGA-LPAHV*GPDAGRRPWRF*TWCANRRALRRTIG*HrPVR*GRRESFSGREN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLFYGRLKNLKGHDLNQAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLW 762
Cdd:NF000106 107 LYMIGR*LDLSRKDARARADELLERFSLTEA--AGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVW 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 763 TVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSyvlTITTSPEHEKDVETLVQEVS 838
Cdd:NF000106 185 DEVRSmVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVGGR---TLQIRPAHAAELDRMVGAIA 258
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
587-798 |
4.47e-28 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 111.51 E-value: 4.47e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYI---S 663
Cdd:cd03229 4 KNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPlrrR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFygRLknlkghdlnqaveeslksvnlfhggvadipagkySGGMKRRLSVAISLIGSPKV 743
Cdd:cd03229 78 IGMVFQDFALFPHLTVLENIAL--GL----------------------------------SGGQQQRVALARALAMDPDV 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIK--RAKKHAAIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:cd03229 122 LLLDEPTSALDPITRREVRALLKslQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
607-808 |
5.57e-28 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 113.04 E-value: 5.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSF---INMMTGLVK--PSSGSAFVQGLDICKDMDKVYI---SMGVCPQH-DLLWETL 677
Cdd:cd03260 18 DISLDIPKGEITALIGPSGCGKSTLlrlLNRLNDLIPgaPDEGEVLLDGKDIYDLDVDVLElrrRVGMVFQKpNPFPGSI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 678 tgKEHLLFYGRLKNLKGHD-LNQAVEESLKSVNLFhGGVAD-IPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP 755
Cdd:cd03260 98 --YDNVAYGLRLHGIKLKEeLDERVEEALRKAALW-DEVKDrLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 22331655 756 ASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:cd03260 175 ISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
584-799 |
2.43e-27 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 110.90 E-value: 2.43e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDK 659
Cdd:COG1136 5 LELRNLTKSY--GTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISslseRELAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 V---YISMgVCPQHDLLwETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAIS 736
Cdd:COG1136 83 LrrrHIGF-VFQFFNLL-PELTALENVALPLLLAGVSRKERRERARELLERVGL--GDRLDHRPSQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 737 LIGSPKVVYMDEPsTG-LDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFlCDRLGIFVDGRL 799
Cdd:COG1136 159 LVNRPKLILADEP-TGnLDSKTGEEVLELLRElnRELGTTIVMVTHDPELAAR-ADRVIRLRDGRI 222
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
584-807 |
3.31e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 112.45 E-value: 3.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQgrDGNP-PKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK---DMDK 659
Cdd:PRK13637 3 IKIENLTHIYM--EGTPfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDkkvKLSD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VYISMGVC---PQHDLLWETLtgKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHGGVADIPAGKYSGGMKRRLSVAIS 736
Cdd:PRK13637 81 IRKKVGLVfqyPEYQLFEETI--EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 737 LIGSPKVVYMDEPSTGLDPASRINLWTVIK--RAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKelHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
584-809 |
3.64e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 111.05 E-value: 3.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGNPPklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVY-- 661
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVP--VLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFrr 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 -ISM-------GVCPQH---DLLWETLtgkehllfygRLKNLKGHDlnQAVEESLKSVNLfHGGVADipagKY----SGG 726
Cdd:COG1124 80 rVQMvfqdpyaSLHPRHtvdRILAEPL----------RIHGLPDRE--ERIAELLEQVGL-PPSFLD----RYphqlSGG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 727 MKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK--RAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGN 804
Cdd:COG1124 143 QRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKdlREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELT 222
|
....*
gi 22331655 805 PKELK 809
Cdd:COG1124 223 VADLL 227
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
608-799 |
4.11e-27 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 109.91 E-value: 4.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMD------KV-YismgvCPQHDLLWETlTGK 680
Cdd:COG4619 19 VSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPL-SAMPppewrrQVaY-----VPQEPALWGG-TVR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 681 EHLLFYGRLKNLKGHDlnQAVEESLKSVNLfHGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRIN 760
Cdd:COG4619 92 DNLPFPFQLRERKFDR--ERALELLERLGL-PPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENTRR 168
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 761 LWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:COG4619 169 VEELLREylAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
587-799 |
5.13e-27 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 110.36 E-value: 5.13e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRDGNPPklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDKVYI 662
Cdd:cd03258 5 KNVSKVFGDTGGKVT--ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgKELRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGSPK 742
Cdd:cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 743 VVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDinRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
607-807 |
6.40e-27 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 110.12 E-value: 6.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYISMGVCPQHDLLWETLTGKEHLLFY 686
Cdd:cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQNYALFPHMTVYKNIAYG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK 766
Cdd:cd03299 96 LKKRKVDKKEIERKVLEIAEMLGIDH--LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 22331655 767 RAKKHAA--IILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:cd03299 174 KIRKEFGvtVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
584-808 |
1.92e-26 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 109.66 E-value: 1.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGNPPKL------------------AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGS 645
Cdd:cd03294 1 IKIKGLYKIFGKNPQKAFKLlakgkskeeilkktgqtvGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 646 AFVQGLDIC------------KDMDKVYISMGVCPQHDLLWETLTGKEhllfygrlknLKGHDLN---QAVEESLKSVNL 710
Cdd:cd03294 81 VLIDGQDIAamsrkelrelrrKKISMVFQSFALLPHRTVLENVAFGLE----------VQGVPRAereERAAEALELVGL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 711 fhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLC 788
Cdd:cd03294 151 --EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRlqAELQKTIVFITHDLDEALRLG 228
|
250 260
....*....|....*....|
gi 22331655 789 DRLGIFVDGRLQCIGNPKEL 808
Cdd:cd03294 229 DRIAIMKDGRLVQVGTPEEI 248
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
614-803 |
3.64e-26 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 107.38 E-value: 3.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 614 SGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQG---LDICKDMD------KVyismGVCPQHDLLWETLTGKEHLL 684
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlFDSRKKINlppqqrKI----GLVFQQYALFPHLNVRENLA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 685 FygRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTV 764
Cdd:cd03297 98 F--GLKRKRNREDRISVDELLDLLGLDH--LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 765 IKRAKKHAAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIG 803
Cdd:cd03297 174 LKQIKKNLNIpvIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
587-799 |
1.42e-25 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 104.94 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPS--SGSAFVQGLDIckDMDKVYISM 664
Cdd:cd03213 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLgvSGEVLINGRPL--DKRSFRKII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 665 GVCPQHDLLWETLTGKEHLLFYGRLKNLkghdlnqaveeslksvnlfhggvadipagkySGGMKRRLSVAISLIGSPKVV 744
Cdd:cd03213 85 GYVPQDDILHPTLTVRETLMFAAKLRGL-------------------------------SGGERKRVSIALELVSNPSLL 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 745 YMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHS-MEEAEFLCDRLGIFVDGRL 799
Cdd:cd03213 134 FLDEPTSGLDSSSALQVMSLLRRlADTGRTIICSIHQpSSEIFELFDKLLLLSQGRV 190
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
545-818 |
2.57e-25 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 112.23 E-value: 2.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 545 MLSFQkersDVSVEMEKLDVI----QEKETVKQLIFERSKNHGIVCDNLKKVYQGRDgnppKLAVCGLSLAVPSGECFGM 620
Cdd:COG2274 435 LQRFQ----DAKIALERLDDIldlpPEREEGRSKLSLPRLKGDIELENVSFRYPGDS----PPVLDNISLTIKPGERVAI 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 621 LGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYI--SMGVCPQHDLLwetltgkehllFYGRLK-NLKGHDL 697
Cdd:COG2274 507 VGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDL-RQIDPASLrrQIGVVLQDVFL-----------FSGTIReNITLGDP 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 698 N---QAVEESLKSVNLfHGGVADIPAGkY-----------SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWT 763
Cdd:COG2274 575 DatdEEIIEAARLAGL-HDFIEALPMG-YdtvvgeggsnlSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILE 652
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 764 VIKRAKKHAAIILTTHSMEEAEfLCDRlgIFV--DGRLQCIGNPKELKGRYGGSYVL 818
Cdd:COG2274 653 NLRRLLKGRTVIIIAHRLSTIR-LADR--IIVldKGRIVEDGTHEELLARKGLYAEL 706
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
584-808 |
3.19e-25 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 108.24 E-value: 3.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDgnppklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVY-- 661
Cdd:COG3839 4 LELENVSKSYGGVE------ALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGG----RDVTDLPpk 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 ---ISMgVcPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRlsVAI--S 736
Cdd:COG3839 74 drnIAM-V-FQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGL--EDLLDRKPKQLSGGQRQR--VALgrA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22331655 737 LIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG3839 148 LVREPKVFLLDEPLSNLDAKLRVEMRAEIKRlhRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEEL 221
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
602-851 |
4.70e-25 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 108.02 E-value: 4.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICkDMDKVYIS------MGVCPQHDLLWE 675
Cdd:TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM-KQSPVELRevrrkkIGMVFQQFALFP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 676 TLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP 755
Cdd:TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGL--EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 756 ASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKElkgryggsyvltITTSPEHEKdVETL 833
Cdd:TIGR01186 163 LIRDSMQDELKKlqATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDE------------ILRNPANEY-VEEF 229
|
250 260
....*....|....*....|..
gi 22331655 834 VQEV----SSNARKIYHIAGTQ 851
Cdd:TIGR01186 230 IGKVdlsqVFDAERIAQRMNTG 251
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
587-791 |
1.13e-24 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 104.17 E-value: 1.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGrdGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKvyismG 665
Cdd:COG4525 7 RHVSVRYPG--GGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGpGADR-----G 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 666 VCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVY 745
Cdd:COG4525 80 VVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGL--ADFARRRIWQLSGGMRQRVGIARALAADPRFLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 22331655 746 MDEPSTGLDPASR-------INLWtvikrAKKHAAIILTTHSMEEAEFLCDRL 791
Cdd:COG4525 158 MDEPFGALDALTReqmqellLDVW-----QRTGKGVFLITHSVEEALFLATRL 205
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
584-853 |
1.18e-24 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 108.84 E-value: 1.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPS---SGSAFVQGLDICKDMDKV 660
Cdd:COG1123 5 LEVRDLSVRYPGGD----VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 661 ---YISMgVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISL 737
Cdd:COG1123 81 rgrRIGM-VFQDPMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLER--RLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 738 IGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH--AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGG- 814
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRELQRErgTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQAl 237
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 22331655 815 ----SYVLTITTSPEHEKDVETLVqEVsSNARKIYHIAGTQKF 853
Cdd:COG1123 238 aavpRLGAARGRAAPAAAAAEPLL-EV-RNLSKRYPVRGKGGV 278
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
584-798 |
2.18e-24 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 100.54 E-value: 2.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnpPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYI 662
Cdd:cd03228 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMGVCPQHDLLwetltgkehllFYGRLKNlkghdlnqaveeslksvNLFhggvadipagkySGGMKRRLSVAISLIGSPK 742
Cdd:cd03228 77 NIAYVPQDPFL-----------FSGTIRE-----------------NIL------------SGGQRQRIAIARALLRDPP 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 743 VVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEfLCDRlgIFV--DGR 798
Cdd:cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADR--IIVldDGR 171
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
604-815 |
2.25e-24 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 109.83 E-value: 2.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSA--FVQGLDiCKDMD---KV-YISmgvcpQHDLLWETL 677
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAwlFGQPVD-AGDIAtrrRVgYMS-----QAFSLYGEL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 678 TGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPAS 757
Cdd:NF033858 355 TVRQNLELHARLFHLPAAEIAARVAEMLERFDL--ADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVA 432
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 758 RINLW-TVIKRAKK-HAAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKELKGRYGGS 815
Cdd:NF033858 433 RDMFWrLLIELSREdGVTIFISTHFMNEAE-RCDRISLMHAGRVLASDTPAALVAARGAA 491
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
584-808 |
2.99e-24 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 102.66 E-value: 2.99e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDgnppklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC--KDMDKVY 661
Cdd:PRK10895 4 LTAKNLAKAYKGRR------VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 ISMGVCPQHDLLWETLTGKEHLLFYGRL-KNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGS 740
Cdd:PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEH--LRDSMGQSLSGGERRRVEIARALAAN 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 741 PKVVYMDEPSTGLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGlGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
584-803 |
4.40e-24 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 101.18 E-value: 4.40e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgrdgnPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVY-- 661
Cdd:cd03301 1 VELENVTKRF------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG----RDVTDLPpk 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 ---ISMGVcpQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLI 738
Cdd:cd03301 71 drdIAMVF--QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH--LLDRKPKQLSGGQRQRVALGRAIV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH--AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 803
Cdd:cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRlgTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
584-808 |
8.25e-24 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 101.11 E-value: 8.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnpPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS 663
Cdd:cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 ----MGVCPQHDLLWETLTGKEHLLFyGRL----------KNLKGHDLNQAVEeSLKSVNLFHggVADIPAGKYSGGMKR 729
Cdd:cd03256 76 lrrqIGMIFQQFNLIERLSVLENVLS-GRLgrrstwrslfGLFPKEEKQRALA-ALERVGLLD--KAYQRADQLSGGQQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 730 RLSVAISLIGSPKVVYMDEPSTGLDPA-SRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:cd03256 152 RVAIARALMQQPKLILADEPVASLDPAsSRQVMDLLKRINREEGiTVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231
|
.
gi 22331655 808 L 808
Cdd:cd03256 232 L 232
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
584-812 |
9.66e-24 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 100.93 E-value: 9.66e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGNPPKL----------------AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAF 647
Cdd:COG1134 5 IEVENVSKSYRLYHEPSRSLkelllrrrrtrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 648 VQG-----LDickdmdkvyISMGVCPQhdllwetLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGK 722
Cdd:COG1134 85 VNGrvsalLE---------LGAGFHPE-------LTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAEL--GDFIDQPVKT 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 723 YSGGMKRRLSVAISLIGSPKVVYMDEP-STGlDPA------SRINlwtviKRAKKHAAIILTTHSMEEAEFLCDRLGIFV 795
Cdd:COG1134 147 YSSGMRARLAFAVATAVDPDILLVDEVlAVG-DAAfqkkclARIR-----ELRESGRTVIFVSHSMGAVRRLCDRAIWLE 220
|
250
....*....|....*..
gi 22331655 796 DGRLQCIGNPKELKGRY 812
Cdd:COG1134 221 KGRLVMDGDPEEVIAAY 237
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
607-779 |
1.48e-23 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 100.04 E-value: 1.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLV---KPSSGSAFVQGLDICKDMDKVYISMGvcPQHDLLWETLTGKEHL 683
Cdd:cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVeggGTTSGQILFNGQPRKPDQFQKCVAYV--RQDDILLPGLTVRETL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 LFYG--RLKNLKGHDLNQAVEESLKSVNLFHGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:cd03234 103 TYTAilRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182
|
170
....*....|....*....
gi 22331655 762 WTVIKR-AKKHAAIILTTH 779
Cdd:cd03234 183 VSTLSQlARRNRIVILTIH 201
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
584-808 |
1.85e-23 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 100.45 E-value: 1.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgrdgNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDK 659
Cdd:TIGR02315 2 LEVENLSKVY-----PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITklrgKKLRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VYISMGVCPQHDLLWETLTGKEHLL--FYGRLKNLKG-------HDLNQAVEeSLKSVNLFHggVADIPAGKYSGGMKRR 730
Cdd:TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLhgRLGYKPTWRSllgrfseEDKERALS-ALERVGLAD--KAYQRADQLSGGQQQR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 731 LSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGItvIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
603-813 |
3.95e-23 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 105.98 E-value: 3.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 603 LAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICkdmDKVYISMgVCPQ-----HDL---LW 674
Cdd:NF033858 15 VALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMA---DARHRRA-VCPRiaympQGLgknLY 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNL--FhggvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTG 752
Cdd:NF033858 91 PTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLapF----ADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTG 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 753 LDPASRINLWTVIKRAKKHAA---IILTTHSMEEAE-FlcDRLGIFVDGRLQCIGNPKELKGRYG 813
Cdd:NF033858 167 VDPLSRRQFWELIDRIRAERPgmsVLVATAYMEEAErF--DWLVAMDAGRVLATGTPAELLARTG 229
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
580-808 |
5.34e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 99.78 E-value: 5.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 580 KNHGIVCDNLKKVYQGRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC--KDM 657
Cdd:PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSdeENL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 658 DKVYISMGVCPQH--DLLWETLT------GKEHLlfygrlkNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKR 729
Cdd:PRK13633 81 WDIRNKAGMVFQNpdNQIVATIVeedvafGPENL-------GIPPEEIRERVDESLKKVGMYE--YRRHAPHLLSGGQKQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 730 RLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKK--HAAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKkyGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKE 230
|
.
gi 22331655 808 L 808
Cdd:PRK13633 231 I 231
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
598-803 |
8.37e-23 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 96.35 E-value: 8.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 598 GNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYIS--MGVCPQhdllwe 675
Cdd:cd03214 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-ASLSPKELArkIAYVPQ------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 676 tltgkehllfygrlknlkghdlnqaveeSLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP 755
Cdd:cd03214 81 ----------------------------ALELLGLAH--LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 22331655 756 ASRINLWTVIKRAKKHA--AIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 803
Cdd:cd03214 131 AHQIELLELLRRLARERgkTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
607-791 |
8.80e-23 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 97.33 E-value: 8.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDM--DKVYISMGVcPQHDLLWETLtgKEHLL 684
Cdd:cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKErrKSIGYVMQD-VDYQLFTDSV--REELL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 685 FygRLKNLkgHDLNQAVEESLKSVNLFhgGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTV 764
Cdd:cd03226 95 L--GLKEL--DAGNEQAETVLKDLDLY--ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
|
170 180
....*....|....*....|....*...
gi 22331655 765 IKR-AKKHAAIILTTHSMEEAEFLCDRL 791
Cdd:cd03226 169 IRElAAQGKAVIVITHDYEFLAKVCDRV 196
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
584-782 |
1.03e-22 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 97.09 E-value: 1.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgrdgnPPK-LAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKV-- 660
Cdd:cd03292 1 IEFINVTKTY------PNGtAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAip 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 661 YI--SMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHgGVADIPAGkYSGGMKRRLSVAISLI 738
Cdd:cd03292 75 YLrrKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-KHRALPAE-LSGGEQQRVAIARAIV 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAA-IILTTHSME 782
Cdd:cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTtVVVATHAKE 197
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
584-803 |
1.51e-22 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 97.22 E-value: 1.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVY----------------QGRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGsaf 647
Cdd:cd03220 1 IELENVSKSYptykggssslkklgilGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 648 vqgldickdmdKVYISMGVCPQHDL---LWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYS 724
Cdd:cd03220 78 -----------TVTVRGRVSSLLGLgggFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL--GDFIDLPVKTYS 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 725 GGMKRRLSVAISLIGSPKVVYMDEP-STGlDPASRINLWTVIKRAKKHAAI-ILTTHSMEEAEFLCDRLGIFVDGRLQCI 802
Cdd:cd03220 145 SGMKARLAFAIATALEPDILLIDEVlAVG-DAAFQEKCQRRLRELLKQGKTvILVSHDPSSIKRLCDRALVLEKGKIRFD 223
|
.
gi 22331655 803 G 803
Cdd:cd03220 224 G 224
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
607-812 |
2.52e-22 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 102.15 E-value: 2.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYISMGVCPQHdllwetltgkeHLLF 685
Cdd:COG4987 353 GLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDlDEDDLRRRIAVVPQR-----------PHLF 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 686 YGRLK-NLKghdL------NQAVEESLKSVNLfHGGVADIPAG----------KYSGGMKRRLSVAISLIGSPKVVYMDE 748
Cdd:COG4987 422 DTTLReNLR---LarpdatDEELWAALERVGL-GDWLAALPDGldtwlgeggrRLSGGERRRLALARALLRDAPILLLDE 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 749 PSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKEL---KGRY 812
Cdd:COG4987 498 PTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGTHEELlaqNGRY 563
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
607-809 |
4.43e-22 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 95.58 E-value: 4.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI----CKDMdkvyISMGV--CPQHDLLWETLTGK 680
Cdd:cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDItglpPHER----ARAGIgyVPEGRRIFPELTVE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 681 EHLL--FYGRLKNLKGHDLNQAVE------ESLKSvnlfhggvadiPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTG 752
Cdd:cd03224 94 ENLLlgAYARRRAKRKARLERVYElfprlkERRKQ-----------LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 753 LDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 809
Cdd:cd03224 163 LAPKIVEEIFEAIRELRDEgVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
583-808 |
4.58e-22 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 96.25 E-value: 4.58e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 583 GIVCDNLKKVYqgrdGNPPklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYI 662
Cdd:cd03296 2 SIEVRNVSKRF----GDFV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA-TDVPVQER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGH----DLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLI 738
Cdd:cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERppeaEIRAKVHELLKLVQL--DWLADRYPAQLSGGQRQRVALARALA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKRA--KKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLhdELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
584-808 |
5.39e-22 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 96.73 E-value: 5.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVY-- 661
Cdd:TIGR04520 1 IEVENVSFSYPESE----KPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDT-LDEENLWei 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 ---ISM----------GVCPQHDLLWetltGKEHLlfygrlkNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMK 728
Cdd:TIGR04520 76 rkkVGMvfqnpdnqfvGATVEDDVAF----GLENL-------GVPREEMRKRVDEALKLVGMED--FRDREPHLLSGGQK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 729 RRlsVAIS--LIGSPKVVYMDEPSTGLDPASRINLWTVIK--RAKKHAAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGN 804
Cdd:TIGR04520 143 QR--VAIAgvLAMRPDIIILDEATSMLDPKGRKEVLETIRklNKEEGITVISITHDMEEAV-LADRVIVMNKGKIVAEGT 219
|
....
gi 22331655 805 PKEL 808
Cdd:TIGR04520 220 PREI 223
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
607-803 |
8.98e-22 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 94.84 E-value: 8.98e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKvyisMGVCPQHDLL-WETLTGKEHLL 684
Cdd:TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEpGPDR----MVVFQNYSLLpWLTVRENIALA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 685 FYGRLKNLKGHDLNQAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTV 764
Cdd:TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEA--ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 765 IKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 803
Cdd:TIGR01184 157 LMQiwEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
584-799 |
1.29e-21 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 95.12 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDK 659
Cdd:COG3638 3 LELRNLSKRYPGG-----TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTalrgRALRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VYISMGVCPQ-HDL-------------------LWETLTGkehlLFYGRLKnlkghdlnQAVEESLKSVNLfhGGVADIP 719
Cdd:COG3638 78 LRRRIGMIFQqFNLvprlsvltnvlagrlgrtsTWRSLLG----LFPPEDR--------ERALEALERVGL--ADKAYQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 720 AGKYSGGMKRRlsVAIS--LIGSPKVVYMDEPSTGLDPAS---------RINlwtvikrAKKHAAIILTTHSMEEAEFLC 788
Cdd:COG3638 144 ADQLSGGQQQR--VAIAraLVQEPKLILADEPVASLDPKTarqvmdllrRIA-------REDGITVVVNLHQVDLARRYA 214
|
250
....*....|..
gi 22331655 789 DR-LGIfVDGRL 799
Cdd:COG3638 215 DRiIGL-RDGRV 225
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
596-779 |
1.39e-21 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 93.58 E-value: 1.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 596 RDGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKvyismgvcPQHDLLW- 674
Cdd:TIGR01189 10 RGERM---LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDE--------PHENILYl 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 -------ETLTGKEHLLFYGRLknLKGHDLNqaVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMD 747
Cdd:TIGR01189 79 ghlpglkPELSALENLHFWAAI--HGGAQRT--IEDALAAVGL--TGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILD 152
|
170 180 190
....*....|....*....|....*....|....
gi 22331655 748 EPSTGLDPASrINLWTVIKRAKKHA--AIILTTH 779
Cdd:TIGR01189 153 EPTTALDKAG-VALLAGLLRAHLARggIVLLTTH 185
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
607-779 |
2.73e-21 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 92.94 E-value: 2.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCPQHDLLWETLTGKEHLLFY 686
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFW 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLknlkgHDlNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTvik 766
Cdd:cd03231 98 HAD-----HS-DEQVEEALARVGL--NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE--- 166
|
170
....*....|....*..
gi 22331655 767 RAKKHAA----IILTTH 779
Cdd:cd03231 167 AMAGHCArggmVVLTTH 183
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
584-799 |
2.85e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 91.89 E-value: 2.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdGNPPKLAvcGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYI 662
Cdd:cd03246 1 LEVENVSFRYPG--AEPPVLR--NVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMGVCPQHDllwetltgkehllfygrlknlkghdlnqaveeslksvNLFHGGVADIpagKYSGGMKRRLSVAISLIGSPK 742
Cdd:cd03246 77 HVGYLPQDD-------------------------------------ELFSGSIAEN---ILSGGQRQRLGLARALYGNPR 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 743 VVYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEfLCDRLGIFVDGRL 799
Cdd:cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAgATRIVIAHRPETLA-SADRILVLEDGRV 173
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
584-813 |
4.91e-21 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 98.29 E-value: 4.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYIS 663
Cdd:COG4988 337 IELEDVSFSYPGG-----RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDL-SDLDPASWR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 --MGVCPQHDLLwetltgkehllFYGRLK-NLKGHDLN---QAVEESLKSVNLfHGGVADIPAG----------KYSGGM 727
Cdd:COG4988 411 rqIAWVPQNPYL-----------FAGTIReNLRLGRPDasdEELEAALEAAGL-DEFVAALPDGldtplgeggrGLSGGQ 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 728 KRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFlCDRlgIFV--DGRLQCIGNP 805
Cdd:COG4988 479 AQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLAQ-ADR--ILVldDGRIVEQGTH 555
|
....*...
gi 22331655 806 KELKGRYG 813
Cdd:COG4988 556 EELLAKNG 563
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
604-808 |
5.35e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 93.99 E-value: 5.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI---CKDMDKVYISMGVCPQH--DLLWETlT 678
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIkydKKSLLEVRKTVGIVFQNpdDQLFAP-T 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 679 GKEHLLFyGRLK-NLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP-- 755
Cdd:PRK13639 96 VEEDVAF-GPLNlGLSKEEVEKRVKEALKAVGM--EGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPmg 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 22331655 756 ASRInLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13639 173 ASQI-MKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
599-799 |
5.42e-21 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 92.27 E-value: 5.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 599 NPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYIS--MGVCPQhdllwet 676
Cdd:cd03245 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI-RQLDPADLRrnIGYVPQ------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 677 ltgkEHLLFYGRLK-NLKGHDLNQAVEESLKSVNLfhGGVADI----PAG----------KYSGGMKRRLSVAISLIGSP 741
Cdd:cd03245 86 ----DVTLFYGTLRdNITLGAPLADDERILRAAEL--AGVTDFvnkhPNGldlqigergrGLSGGQRQAVALARALLNDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 742 KVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTH--SMEEaefLCDRLGIFVDGRL 799
Cdd:cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHrpSLLD---LVDRIIVMDSGRI 216
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
607-798 |
9.44e-21 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 92.45 E-value: 9.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSG-SAFVQGldicKDMDKVYI-----SMGV--------CPQHDL 672
Cdd:COG1119 21 DISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFG----ERRGGEDVwelrkRIGLvspalqlrFPRDET 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 673 LWET-LTGkehllFY---GRLKNLKGHDLNQAvEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDE 748
Cdd:COG1119 97 VLDVvLSG-----FFdsiGLYREPTDEQRERA-RELLELLGLAH--LADRPFGTLSQGEQRRVLIARALVKDPELLILDE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 22331655 749 PSTGLDPASRINLWTVIKR-AKKHA-AIILTTHSMEE--AEFlcDRLGIFVDGR 798
Cdd:COG1119 169 PTAGLDLGARELLLALLDKlAAEGApTLVLVTHHVEEipPGI--THVLLLKDGR 220
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
603-809 |
1.13e-20 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 92.36 E-value: 1.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 603 LAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCP--QHDLLWETLTGK 680
Cdd:PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRtfQHVRLFREMTVI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 681 EHLLF--YGRLKN------LKGHDLNQAVEES-------LKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVY 745
Cdd:PRK11300 99 ENLLVaqHQQLKTglfsglLKTPAFRRAESEAldraatwLERVGL--LEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 746 MDEPSTGLDPASRINLWTVIKRAKKH--AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 809
Cdd:PRK11300 177 LDEPAAGLNPKETKELDELIAELRNEhnVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
584-799 |
1.17e-20 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 89.80 E-value: 1.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgrdgnPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldickdmdkvyis 663
Cdd:cd03216 1 LELRGITKRF------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 mgvcpqhdllwetltgkehllfygrlKNLKGHDLNQAVEEslksvnlfhgGVADIPagKYSGGMKRRLSVAISLIGSPKV 743
Cdd:cd03216 62 --------------------------KEVSFASPRDARRA----------GIAMVY--QLSVGERQMVEIARALARNARL 103
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:cd03216 104 LILDEPTAALTPAEVERLFKVIRRlRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
583-808 |
2.32e-20 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 93.67 E-value: 2.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 583 GIVCDNLKKVYQGRDgnppklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDickdmdkVYI 662
Cdd:COG1118 2 SIEVRNISKRFGSFT------LLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRD-------LFT 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 S-------MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADipagKY----SGGMKRRL 731
Cdd:COG1118 69 NlpprerrVGFVFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQL--EGLAD----RYpsqlSGGQRQRV 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 732 SVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG1118 143 ALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRlhDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEV 221
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
607-784 |
3.32e-20 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 89.40 E-value: 3.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC---KDMDKVYISMGVCPQH--DLLWETLTGkE 681
Cdd:TIGR01166 10 GLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDysrKGLLERRQRVGLVFQDpdDQLFAADVD-Q 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 682 HLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:TIGR01166 89 DVAFGPLNLGLSEAEVERRVREALTAVGASG--LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
|
170 180
....*....|....*....|....
gi 22331655 762 WTVIKRAKKHA-AIILTTHSMEEA 784
Cdd:TIGR01166 167 LAILRRLRAEGmTVVISTHDVDLA 190
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
587-793 |
4.14e-20 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 92.42 E-value: 4.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRDGNPPklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP---SSGSAFVQGLDIC----KDMDK 659
Cdd:COG0444 5 RNLKVYFPTRRGVVK--AVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLklseKELRK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VY---ISMgVcPQH------------DLLWETLtgKEHllfygrlKNLKGHDLNQAVEESLKSVNLfhggvaDIP---AG 721
Cdd:COG0444 83 IRgreIQM-I-FQDpmtslnpvmtvgDQIAEPL--RIH-------GGLSKAEARERAIELLERVGL------PDPerrLD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 722 KY----SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR---INLwtvIK--RAKKHAAIILTTHSMEEAEFLCDRLG 792
Cdd:COG0444 146 RYphelSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQaqiLNL---LKdlQRELGLAILFITHDLGVVAEIADRVA 222
|
.
gi 22331655 793 I 793
Cdd:COG0444 223 V 223
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
603-819 |
4.98e-20 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 93.56 E-value: 4.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 603 LAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDK------------VYISMGVCPQH 670
Cdd:PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAelrevrrkkiamVFQSFALMPHM 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 671 DLLWETLTGKEhllfygrLKNLKGHDLNQAVEESLKSVNL--FHGGVADipagKYSGGMKRRLSVAISLIGSPKVVYMDE 748
Cdd:PRK10070 122 TVLDNTAFGME-------LAGINAEERREKALDALRQVGLenYAHSYPD----ELSGGMRQRVGLARALAINPDILLMDE 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 749 PSTGLDPASRINLWT--VIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLT 819
Cdd:PRK10070 191 AFSALDPLIRTEMQDelVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRT 263
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
588-799 |
9.35e-20 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 91.79 E-value: 9.35e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQGrdGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDKVYIS 663
Cdd:PRK11153 6 NISKVFPQ--GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTalseKELRKARRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVnlfhgGVADiPAGKY----SGGMKRRLSVAISLIG 739
Cdd:PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELV-----GLSD-KADRYpaqlSGGQKQRVAIARALAS 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 740 SPKVVYMDEPSTGLDPA---SRINLWTVIKRaKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK11153 158 NPKVLLCDEATSALDPAttrSILELLKDINR-ELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
584-797 |
1.01e-19 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 88.36 E-value: 1.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC---KDMDKV 660
Cdd:cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTddkKNINEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 661 YISMGVCPQHDLLWETLTGKEHLLFygRLKNLKGHDLNQAVE---ESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISL 737
Cdd:cd03262 75 RQKVGMVFQQFNLFPHLTVLENITL--APIKVKGMSKAEAEEralELLEKVGLAD--KADAYPAQLSGGQQQRVAIARAL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22331655 738 IGSPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLgIFVDG 797
Cdd:cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDlAEEGMTMVVVTHEMGFAREVADRV-IFMDD 210
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
607-779 |
2.20e-19 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 87.17 E-value: 2.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYismgvcpqHDLLW--------ETLT 678
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH--------QDLLYlghqpgikTELT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 679 GKEHLLFYGRLKNLKGHDlnqAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR 758
Cdd:PRK13538 91 ALENLRFYQRLHGPGDDE---ALWEALAQVGL--AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165
|
170 180
....*....|....*....|....*
gi 22331655 759 INLWTVIKRakkHAA----IILTTH 779
Cdd:PRK13538 166 ARLEALLAQ---HAEqggmVILTTH 187
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
555-808 |
2.57e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 92.56 E-value: 2.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 555 VSVEMEKLDVIQEKETVKQlifersKNHGIVCDNLKKVYQGRDGNPPKlAVCGLSLAVPSGECFGMLGPNGAGKTSFINM 634
Cdd:TIGR03269 257 VAVFMEGVSEVEKECEVEV------GEPIIKVRNVSKRYISVDRGVVK-AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 635 MTGLVKPSSGSAFVQGLDICKDMDKV----------YISM-----GVCPQHDLLwETLTGKEHLLFYGRLKNLKG-HDLN 698
Cdd:TIGR03269 330 IAGVLEPTSGEVNVRVGDEWVDMTKPgpdgrgrakrYIGIlhqeyDLYPHRTVL-DNLTEAIGLELPDELARMKAvITLK 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 699 QAVEESLKSVNlfhggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKK--HAAIIL 776
Cdd:TIGR03269 409 MVGFDEEKAEE-----ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREemEQTFII 483
|
250 260 270
....*....|....*....|....*....|..
gi 22331655 777 TTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:TIGR03269 484 VSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
607-795 |
3.74e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 86.85 E-value: 3.74e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIckDMDKVYISMGVCPQHDLLWETLTGKEHLLFY 686
Cdd:PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--DDPDVAEACHYLGHRNAMKPALTVAENLEFW 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLKNlkGHDLnqAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAiSLIGSPKVVYM-DEPSTGLDPASRINLWTVI 765
Cdd:PRK13539 98 AAFLG--GEEL--DIAAALEAVGL--APLAHLPFGYLSAGQKRRVALA-RLLVSNRPIWIlDEPTAALDAAAVALFAELI 170
|
170 180 190
....*....|....*....|....*....|....
gi 22331655 766 K-RAKKHAAIILTTHS---MEEAEFLcdRLGIFV 795
Cdd:PRK13539 171 RaHLAQGGIVIAATHIplgLPGAREL--DLGPFA 202
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
584-807 |
3.87e-19 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 88.15 E-value: 3.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYI- 662
Cdd:PRK11231 3 LRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAr 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMGVCPQHDLLWETLTGKE--------HLLFYGRlknLKGHDlNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVA 734
Cdd:PRK11231 77 RLALLPQHHLTPEGITVRElvaygrspWLSLWGR---LSAED-NARVNQAMEQTRINH--LADRRLTDLSGGQRQRAFLA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22331655 735 ISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTT-HSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVlHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
608-811 |
6.24e-19 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 89.40 E-value: 6.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS-----MGVCPQHDLLWETLTGKEH 682
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPpekrrIGYVFQEARLFPHLSVRGN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLfYGRlKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLW 762
Cdd:TIGR02142 96 LR-YGM-KRARPSERRISFERVIELLGIGH--LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 22331655 763 TVIKRAKKHAAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGR 811
Cdd:TIGR02142 172 PYLERLHAEFGIpiLYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
584-782 |
7.25e-19 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 86.26 E-value: 7.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppKLAVCGLSLAVPSGE-CFgMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYI 662
Cdd:COG2884 2 IRFENVSKRYPGG-----REALSDVSLEIEKGEfVF-LTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDL-SRLKRREI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 -----SMGVCPQ-HDLLwETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAIS 736
Cdd:COG2884 75 pylrrRIGVVFQdFRLL-PDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGL--SDKAKALPHELSGGEQQRVAIARA 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 22331655 737 LIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSME 782
Cdd:COG2884 152 LVNRPELLLADEPTGNLDPETSWEIMELLEEINRRgTTVLIATHDLE 198
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
608-808 |
7.96e-19 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 89.01 E-value: 7.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK------DMDKVYISMGVCPqHDLLWETLTgke 681
Cdd:PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHrsiqqrDICMVFQSYALFP-HMSLGENVG--- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 682 hllfYG-RLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRIN 760
Cdd:PRK11432 101 ----YGlKMLGVPKEERKQRVKEALELVDL--AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 22331655 761 LWTVIKRAKKHAAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK11432 175 MREKIRELQQQFNItsLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
581-808 |
9.93e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 87.10 E-value: 9.93e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 581 NHGIVCDNLKKVYqgRDGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKV 660
Cdd:PRK13647 2 DNIIEVEDLHFRY--KDGTK---ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 661 YISM-GVCPQ--HDLLWETlTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISL 737
Cdd:PRK13647 77 VRSKvGLVFQdpDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD--FRDKPPYHLSYGQKKRVAIAGVL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 738 IGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGkTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
584-799 |
1.36e-18 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 88.21 E-value: 1.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGnpPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDK 659
Cdd:COG1135 2 IELENLSKTFPTKGG--PVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalseRELRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VYISMGVCPQHD-LLWE-TLtgkehllfYG------RLKNLKGHDLNQAVEESLKSVNLfhggvADIpAGKY----SGGM 727
Cdd:COG1135 80 ARRKIGMIFQHFnLLSSrTV--------AEnvalplEIAGVPKAEIRKRVAELLELVGL-----SDK-ADAYpsqlSGGQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 728 KRRLSVAISLIGSPKVVYMDEPSTGLDPAS---------RINlwtvikrAKKHAAIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:COG1135 146 KQRVGIARALANNPKVLLCDEATSALDPETtrsildllkDIN-------RELGLTIVLITHEMDVVRRICDRVAVLENGR 218
|
.
gi 22331655 799 L 799
Cdd:COG1135 219 I 219
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
604-808 |
3.41e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 86.05 E-value: 3.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDkvYISMGVCPQHDLLWETLTGKEHL 683
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG----KPID--YSRKGLMKLRESVGMVFQDPDNQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 LF---------YGRLK-NLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGL 753
Cdd:PRK13636 95 LFsasvyqdvsFGAVNlKLPEDEVRKRVDNALKRTGIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 754 DPASRINLWTVIKRAKKHA--AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13636 173 DPMGVSEIMKLLVEMQKELglTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
589-807 |
3.81e-18 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 87.31 E-value: 3.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 589 LKKVYQGRDGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC------KDMDKVYi 662
Cdd:PRK09452 17 LRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIThvpaenRHVNTVF- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 smgvcpQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPK 742
Cdd:PRK09452 93 ------QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE--FAQRKPHQLSGGQQQRVAIARAVVNKPK 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 743 VVYMDEPSTGLDPASRINLWTVIKRAKKHAAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGItfVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
602-808 |
5.15e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 85.04 E-value: 5.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKD-MDKVYISMGVCPQH-DLLWETLTG 679
Cdd:PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEnLKEIRKKIGIIFQNpDNQFIGATV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 680 KEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRI 759
Cdd:PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGM--EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 22331655 760 NLWTVIK--RAKKHAAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13632 180 EIKKIMVdlRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEI 229
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
607-808 |
8.50e-18 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 83.49 E-value: 8.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVyISMGV--CPQHDLLWETLTGKEHL 683
Cdd:COG0410 21 GVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGlPPHRI-ARLGIgyVPEGRRIFPSLTVEENL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 L--FYGRlknlkghDLNQAVEESLKSV-NLFhggvadiP---------AGKYSGGMKRRLSVAISLIGSPKVVYMDEPST 751
Cdd:COG0410 100 LlgAYAR-------RDRAEVRADLERVyELF-------PrlkerrrqrAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 752 GLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG0410 166 GLAPLIVEEIFEIIRRLNREgVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAEL 223
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
607-827 |
1.02e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 83.81 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVK--PS---SGSAFVQGLDICKdMDKVYISMGV-------CPQHDL-L 673
Cdd:PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEarvSGEVYLDGQDIFK-MDVIELRRRVqmvfqipNPIPNLsI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 674 WETLTGKEHLlfyGRLKNLKgHDLNQAVEESLKSVNLFH--GGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPST 751
Cdd:PRK14247 100 FENVALGLKL---NRLVKSK-KELQERVRWALEKAQLWDevKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 752 GLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKElkgryggsyvltITTSPEHE 827
Cdd:PRK14247 176 NLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE------------VFTNPRHE 239
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
588-808 |
1.08e-17 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 86.04 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYISMGVC 667
Cdd:PRK11607 24 NLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-SHVPPYQRPINMM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 668 PQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMD 747
Cdd:PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE--FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 748 EPSTGLDPA--SRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK11607 175 EPMGALDKKlrDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
602-808 |
1.57e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 83.29 E-value: 1.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSF---INMMTGLVkPS---SGSAFVQGLDI-CKDMDKV----YISMgVCPQH 670
Cdd:PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLlrsINRMNDLN-PEvtiTGSIVYNGHNIySPRTDTVdlrkEIGM-VFQQP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 671 DLLweTLTGKEHLLFYGRLKNLKG-HDLNQAVEESLKSVNLFHGgVADI---PAGKYSGGMKRRLSVAISLIGSPKVVYM 746
Cdd:PRK14239 96 NPF--PMSIYENVVYGLRLKGIKDkQVLDEAVEKSLKGASIWDE-VKDRlhdSALGLSGGQQQRVCIARVLATSPKIILL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 747 DEPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK14239 173 DEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
608-838 |
6.25e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 81.63 E-value: 6.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQG--LDICKDMDKVYiSMGVCPQHDLLWETLTGKEHLLF 685
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGkvLYFGKDIFQID-AIKLRKEVGMVFQQPNPFPHLSI 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 686 YGRLK-NLKGH------DLNQAVEESLKSVNLFHGgVAD---IPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP 755
Cdd:PRK14246 108 YDNIAyPLKSHgikekrEIKKIVEECLRKVGLWKE-VYDrlnSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 756 ASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKElkgryggsyvltITTSPEHEKDVETLVQ 835
Cdd:PRK14246 187 VNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE------------IFTSPKNELTEKYVIG 254
|
...
gi 22331655 836 EVS 838
Cdd:PRK14246 255 RIS 257
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
608-799 |
7.00e-17 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 80.23 E-value: 7.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-KDMDKVYISMGVcpQHDLLWETLTGKEHLLFy 686
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTaAPPADRPVSMLF--QENNLFAHLTVEQNVGL- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLKNLKghdLN----QAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLW 762
Cdd:cd03298 94 GLSPGLK---LTaedrQAIEVALARVGL--AGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 22331655 763 TVIK--RAKKHAAIILTTHSMEEAEFLCDRLgIFVD-GRL 799
Cdd:cd03298 169 DLVLdlHAETKMTVLMVTHQPEDAKRLAQRV-VFLDnGRI 207
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
602-813 |
9.31e-17 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 80.85 E-value: 9.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSF---INMMTGLVkPS---SGSAFVQGLDI-CKDMDKV----YISMgvcpqh 670
Cdd:COG1117 24 KQALKDINLDIPENKVTALIGPSGCGKSTLlrcLNRMNDLI-PGarvEGEILLDGEDIyDPDVDVVelrrRVGM------ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 671 dllwetltgkehlLF---------------YG-RLKNLKG-HDLNQAVEESLKSVNLFHGgVADI---PAGKYSGGMKRR 730
Cdd:COG1117 97 -------------VFqkpnpfpksiydnvaYGlRLHGIKSkSELDEIVEESLRKAALWDE-VKDRlkkSALGLSGGQQQR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 731 LSVAISLIGSPKVVYMDEPSTGLDPAS--RI-NLwtvIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL-------Q 800
Cdd:COG1117 163 LCIARALAVEPEVLLMDEPTSALDPIStaKIeEL---ILELKKDYTIVIVTHNMQQAARVSDYTAFFYLGELvefgpteQ 239
|
250
....*....|....*....
gi 22331655 801 CIGNPKE------LKGRYG 813
Cdd:COG1117 240 IFTNPKDkrtedyITGRFG 258
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
584-791 |
9.58e-17 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 84.26 E-value: 9.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGnppklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYI 662
Cdd:TIGR02857 322 LEFSGVSVAYPGRRP-----ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDADSWRD 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMGVCPQHDLLWETlTGKEHLLFYgrlknLKGHDlNQAVEESLKSVNLfHGGVADIPAG----------KYSGGMKRRLS 732
Cdd:TIGR02857 397 QIAWVPQHPFLFAG-TIAENIRLA-----RPDAS-DAEIREALERAGL-DEFVAALPQGldtpigeggaGLSGGQAQRLA 468
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 733 VAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEfLCDRL 791
Cdd:TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAA-LADRI 526
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
609-808 |
1.20e-16 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 82.46 E-value: 1.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 609 SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYI-----SMGVCPQHDLLWETLTGKEHL 683
Cdd:COG4148 19 DFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFLpphrrRIGYVFQEARLFPHLSVRGNL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 LfYGRLKNLKGH---DLNQAVEeslksvnLFhgGVADI---PAGKYSGGMKRRlsVAI--SLIGSPKVVYMDEPSTGLDP 755
Cdd:COG4148 99 L-YGRKRAPRAErriSFDEVVE-------LL--GIGHLldrRPATLSGGERQR--VAIgrALLSSPRLLLMDEPLAALDL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 756 ASRINLWTVIKRAKKHAAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG4148 167 ARKAEILPYLERLRDELDIpiLYVSHSLDEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
587-808 |
1.79e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 80.98 E-value: 1.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQgrDGNP-PKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-KDMDK----V 660
Cdd:PRK13646 6 DNVSYTYQ--KGTPyEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThKTKDKyirpV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 661 YISMGVC---PQHDLLWETLtgkEHLLFYGRlKNLkGHDLNQAVEESLKS-VNL-FHGGVADIPAGKYSGGMKRRLSVAI 735
Cdd:PRK13646 84 RKRIGMVfqfPESQLFEDTV---EREIIFGP-KNF-KMNLDEVKNYAHRLlMDLgFSRDVMSQSPFQMSGGQMRKIAIVS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 736 SLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSlqTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
584-808 |
2.08e-16 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 79.41 E-value: 2.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppkLAVCgLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVY-- 661
Cdd:COG3840 2 LRLDDLTYRYGD-------FPLR-FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNG----QDLTALPpa 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 ---ISMgVCPQHDLLWetltgkeHLLFY-----GRLKNLKghdLN----QAVEESLKSVNLfhGGVADIPAGKYSGGMKR 729
Cdd:COG3840 70 erpVSM-LFQENNLFP-------HLTVAqniglGLRPGLK---LTaeqrAQVEQALERVGL--AGLLDRLPGQLSGGQRQ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 730 RLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK--RAKKHAAIILTTHSMEEAEFLCDRLgIFV-DGRLQCIGNPK 806
Cdd:COG3840 137 RVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDelCRERGLTVLMVTHDPEDAARIADRV-LLVaDGRIAADGPTA 215
|
..
gi 22331655 807 EL 808
Cdd:COG3840 216 AL 217
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
587-791 |
4.51e-16 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 78.97 E-value: 4.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRdgnpPKLAvcGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVYISMGV 666
Cdd:PRK11248 5 SHLYADYGGK----PALE--DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG----KPVEGPGAERGV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 667 CPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYM 746
Cdd:PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL--EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 22331655 747 DEPSTGLDPASRINLWTVIKRAKKHAA--IILTTHSMEEAEFLCDRL 791
Cdd:PRK11248 153 DEPFGALDAFTREQMQTLLLKLWQETGkqVLLITHDIEEAVFMATEL 199
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
609-808 |
4.73e-16 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 81.99 E-value: 4.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 609 SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldickdmdKVY------------ISMgVcPQHDLLWET 676
Cdd:COG1129 24 SLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDG--------EPVrfrsprdaqaagIAI-I-HQELNLVPN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 677 LTGKEHLlFYGRLKNLKG----HDLNQAVEESLKSVNLfhggvaDI----PAGKYSGGmKRRLsVAI--SLIGSPKVVYM 746
Cdd:COG1129 94 LSVAENI-FLGREPRRGGlidwRAMRRRARELLARLGL------DIdpdtPVGDLSVA-QQQL-VEIarALSRDARVLIL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 747 DEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG1129 165 DEPTASLTEREVERLFRIIRRLKAQgVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
580-808 |
7.30e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 78.64 E-value: 7.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 580 KNHGIVCDNLKKVYQGRDGnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-KDMD 658
Cdd:PRK13648 4 KNSIIVFKNVSFQYQSDAS----FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITdDNFE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 659 KVYISMGVC---PQHDLLWETLtgkEHLLFYGRLKNLKGHD-LNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVA 734
Cdd:PRK13648 80 KLRKHIGIVfqnPDNQFVGSIV---KYDVAFGLENHAVPYDeMHRRVSEALKQVDMLE--RADYEPNALSGGQKQRVAIA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 735 ISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAK--KHAAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKseHNITIISITHDLSEA-MEADHVIVMNKGTVYKEGTPTEI 229
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
614-808 |
1.45e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 80.86 E-value: 1.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 614 SGECFGMLGPNGAGKTSFINM-----MTGLVKpsSGSAFVQGLDICKDMDKVyISMGVcPQHDLLWETLTGKEHLLFYGR 688
Cdd:TIGR00955 50 PGELLAVMGSSGAGKTTLMNAlafrsPKGVKG--SGSVLLNGMPIDAKEMRA-ISAYV-QQDDLFIPTLTVREHLMFQAH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 689 LK---NLKGHDLNQAVEESLKSVNLFHG-----GVADIPAGkYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRIN 760
Cdd:TIGR00955 126 LRmprRVTKKEKRERVDEVLQALGLRKCantriGVPGRVKG-LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 22331655 761 LWTVIKR-AKKHAAIILTTHS-MEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:TIGR00955 205 VVQVLKGlAQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQA 254
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
589-780 |
2.65e-15 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 79.71 E-value: 2.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 589 LKKVYQGRDGNPPKLAvcGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYISMGVC 667
Cdd:TIGR02868 337 LRDLSAGYPGAPPVLD--GVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSlDQDEVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 668 PQHDLLWETlTGKEHLLFyGRlknlkGHDLNQAVEESLKSVNLfHGGVADIPAG----------KYSGGMKRRLSVAISL 737
Cdd:TIGR02868 415 AQDAHLFDT-TVRENLRL-AR-----PDATDEELWAALERVGL-ADWLRALPDGldtvlgeggaRLSGGERQRLALARAL 486
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 22331655 738 IGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHS 780
Cdd:TIGR02868 487 LADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
607-808 |
2.92e-15 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 76.28 E-value: 2.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI---CKDMDKVYISMGVCPQHDLLWETLTGKEHL 683
Cdd:PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVndpKVDERLIRQEAGMVFQQFYLFPHLTALENV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 LFyG--RLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:PRK09493 99 MF-GplRVRGASKEEAEKQARELLAKVGL--AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEV 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 22331655 762 WTVIKR-AKKHAAIILTTHSMEEAEFLCDRLgIFVD-GRLQCIGNPKEL 808
Cdd:PRK09493 176 LKVMQDlAEEGMTMVIVTHEIGFAEKVASRL-IFIDkGRIAEDGDPQVL 223
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
605-824 |
3.56e-15 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 78.73 E-value: 3.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 605 VCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYISMGVC--PQHDLLWETLTGKE- 681
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV-EALSARAASRRVAsvPQDTSLSFEFDVRQv 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 682 -------HLlfyGRLKNLKGHDlNQAVEESLK--SVNLFhggvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTG 752
Cdd:PRK09536 98 vemgrtpHR---SRFDTWTETD-RAAVERAMErtGVAQF----ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 753 LDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE------LKGRYGGSYVLT---ITT 822
Cdd:PRK09536 170 LDINHQVRTLELVRRlVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADvltadtLRAAFDARTAVGtdpATG 249
|
..
gi 22331655 823 SP 824
Cdd:PRK09536 250 AP 251
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
608-808 |
3.61e-15 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 78.20 E-value: 3.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVYI---SMGVCPQHDLLWETLTGKEHLL 684
Cdd:PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG----TDVSRLHArdrKVGFVFQHYALFRHMTVFDNIA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 685 F----YGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRIN 760
Cdd:PRK10851 97 FgltvLPRRERPNAAAIKAKVTQLLEMVQLAH--LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 22331655 761 LWTVIKraKKHAAIILT----THSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK10851 175 LRRWLR--QLHEELKFTsvfvTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
588-799 |
3.84e-15 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 76.41 E-value: 3.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQGRDGnppklavC-GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFV-----QGLDICK--DMDK 659
Cdd:TIGR02323 8 GLSKSYGGGKG-------CrDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYimrsgAELELYQlsEAER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VYISM---GVCPQHDL------------LWETL--TGKEHllfYGRLKnlkghdlnQAVEESLKSVNLFHGGVADIPAgK 722
Cdd:TIGR02323 81 RRLMRtewGFVHQNPRdglrmrvsaganIGERLmaIGARH---YGNIR--------ATAQDWLEEVEIDPTRIDDLPR-A 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 723 YSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKK--HAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRdlGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
607-810 |
5.53e-15 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 75.78 E-value: 5.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI--CKDMD---KVY---------ISMGVCPQHDL 672
Cdd:PRK10619 23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInlVRDKDgqlKVAdknqlrllrTRLTMVFQHFN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 673 LWETLTGKEHLLFYG-RLKNLKGHDLNQAVEESLKSVnlfhgGVADIPAGKY----SGGMKRRLSVAISLIGSPKVVYMD 747
Cdd:PRK10619 103 LWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKV-----GIDERAQGKYpvhlSGGQQQRVSIARALAMEPEVLLFD 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22331655 748 EPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKG 810
Cdd:PRK10619 178 EPTSALDPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
606-805 |
8.13e-15 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 75.14 E-value: 8.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 606 CGLSLAVPSG-----ECFGMLGPNGAGKTSFINMMTGLVKPSSGsafvqglDICKDMDKV-----YIS----MGVcpqHD 671
Cdd:cd03237 11 GEFTLEVEGGsisesEVIGILGPNGIGKTTFIKMLAGVLKPDEG-------DIEIELDTVsykpqYIKadyeGTV---RD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 672 LLWETLTGKEHLLFYgrlknlkghdlNQAVEESLKSVNLFHGGVADIpagkySGGMKRRLSVAISLiGSPKVVYM-DEPS 750
Cdd:cd03237 81 LLSSITKDFYTHPYF-----------KTEIAKPLQIEQILDREVPEL-----SGGELQRVAIAACL-SKDADIYLlDEPS 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22331655 751 TGLDPASRINLWTVIKR----AKKHAAIIltTHSMEEAEFLCDRLGIFvDGR--LQCIGNP 805
Cdd:cd03237 144 AYLDVEQRLMASKVIRRfaenNEKTAFVV--EHDIIMIDYLADRLIVF-EGEpsVNGVANP 201
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
605-785 |
9.54e-15 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 74.06 E-value: 9.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 605 VCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP---SSGSAFVQGldicKDMDKVYI---SMGVCPQHDLLWETLT 678
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNG----RRLTALPAeqrRIGILFQDDLLFPHLS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 679 GKEHLLFyGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR 758
Cdd:COG4136 93 VGENLAF-ALPPTIGRAQRRARVEQALEEAGL--AGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALR 169
|
170 180 190
....*....|....*....|....*....|
gi 22331655 759 INL--WtVIKRAKKHAAI-ILTTHSMEEAE 785
Cdd:COG4136 170 AQFreF-VFEQIRQRGIPaLLVTHDEEDAP 198
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
595-784 |
1.20e-14 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 73.04 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 595 GRDGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDickdmdkvyiSMGVCPQHDLLW 674
Cdd:NF040873 1 GYGGRP---VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGA----------RVAYVPQRSEVP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ETL--TGKE--------HLLFYGRLknlkGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVV 744
Cdd:NF040873 68 DSLplTVRDlvamgrwaRRGLWRRL----TRDDRAAVDDALERVGL--ADLAGRQLGELSGGQRQRALLAQGLAQEADLL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 745 YMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEA 784
Cdd:NF040873 142 LLDEPTTGLDAESRERIIALLAEeHARGATVVVVTHDLELV 182
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
580-812 |
1.65e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 74.49 E-value: 1.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 580 KNHGIVCDNLKkVYQGRDgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPS-----SGSAFVQGLDI- 653
Cdd:PRK14267 1 MKFAIETVNLR-VYYGSN-----HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIy 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 654 CKDMDKVYI--SMGVCPQHDLLWETLTGKEHLLFYGRLKNL-KGHD-LNQAVEESLKSVNLF---HGGVADIPaGKYSGG 726
Cdd:PRK14267 75 SPDVDPIEVrrEVGMVFQYPNPFPHLTIYDNVAIGVKLNGLvKSKKeLDERVEWALKKAALWdevKDRLNDYP-SNLSGG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 727 MKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG--- 803
Cdd:PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGptr 233
|
250
....*....|....
gi 22331655 804 ----NPK-ELKGRY 812
Cdd:PRK14267 234 kvfeNPEhELTEKY 247
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
589-808 |
1.88e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 74.64 E-value: 1.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 589 LKKV-YQGRDGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC--KDMDKVYISMG 665
Cdd:PRK13644 4 LENVsYSYPDGTP---ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGdfSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 666 VC---PQHDLLWETLtgKEHLLFYGRLKNLKGHDLNQAVEESLksvnlfhggvADIPAGKY--------SGGMKRRLSVA 734
Cdd:PRK13644 81 IVfqnPETQFVGRTV--EEDLAFGPENLCLPPIEIRKRVDRAL----------AEIGLEKYrhrspktlSGGQGQCVALA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 735 ISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRA-KKHAAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLhEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENV 222
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
582-808 |
2.09e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 74.45 E-value: 2.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 582 HGIVCDNLKKVYQGRdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKV 660
Cdd:PRK13652 2 HLIETRDLCYSYSGS-----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKeNIREV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 661 YISMGVCPQH--DLLWETlTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLI 738
Cdd:PRK13652 77 RKFVGLVFQNpdDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE--LRDRVPHHLSGGEKKRVAIAGVIA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH--AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETygMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
601-799 |
2.82e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 76.63 E-value: 2.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 601 PKLAVCGL--------SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKD-----MDK--VY---- 661
Cdd:PRK15439 267 PVLTVEDLtgegfrniSLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALstaqrLARglVYlped 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 -----------ISMGVC--PQHDLLWETLTGKEHLLF--YGRLKNLKGHDLNQaveeslksvnlfhggvadiPAGKYSGG 726
Cdd:PRK15439 347 rqssglyldapLAWNVCalTHNRRGFWIKPARENAVLerYRRALNIKFNHAEQ-------------------AARTLSGG 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22331655 727 MKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSiAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
607-811 |
3.51e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 73.89 E-value: 3.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDkvYISMGVCPQHDLLWETLTGKEHLLFY 686
Cdd:PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG----KPLD--YSKRGLLALRQQVATVFQDPEQQIFY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 G--------RLKNL--KGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPA 756
Cdd:PRK13638 93 TdidsdiafSLRNLgvPEAEITRRVDEALTLVDAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 757 SRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGR 811
Cdd:PRK13638 171 GRTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
603-794 |
3.59e-14 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 73.66 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 603 LAVCGLSLAVPSGECFGMLGPNGAGKTSFI---NMMTGLVkPS---SGSAFVQGLDI-CKDMDKVYIS--MGVCPQHDLL 673
Cdd:PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILrcfNRLNDLI-PGfrvEGKVTFHGKNLyAPDVDPVEVRrrIGMVFQKPNP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 674 WETlTGKEHLLFYGRLKNLKGhDLNQAVEESLKSVNLFHGgVAD---IPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPS 750
Cdd:PRK14243 103 FPK-SIYDNIAYGARINGYKG-DMDELVERSLRQAALWDE-VKDklkQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPC 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 22331655 751 TGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIF 794
Cdd:PRK14243 180 SALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFF 223
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
600-808 |
5.55e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 75.59 E-value: 5.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 600 PPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVY--ISMGVCPQHDLLWETL 677
Cdd:PRK09700 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAaqLGIGIIYQELSVIDEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 678 TGKEHlLFYGRLKNLKGHDLN--------QAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEP 749
Cdd:PRK09700 96 TVLEN-LYIGRHLTKKVCGVNiidwremrVRAAMMLLRVGLKVD--LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 750 STGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK09700 173 TSSLTNKEVDYLFLIMNQLRKEgTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
588-811 |
5.74e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 73.23 E-value: 5.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYqgrDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDmdKVY-----I 662
Cdd:PRK13650 9 NLTFKY---KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE--NVWdirhkI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMgVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVnlfhgGVADI----PAgKYSGGMKRRLSVAISLI 738
Cdd:PRK13650 84 GM-VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV-----GMQDFkerePA-RLSGGQKQRVAIAGAVA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKRAKK--HAAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKELKGR 811
Cdd:PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDdyQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
584-808 |
8.65e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 72.75 E-value: 8.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgNPP--KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-----KD 656
Cdd:PRK13634 3 ITFQKVEHRYQY---KTPfeRRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknKK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 657 MDKVYISMGVC---PQHDLLWETLtgkEHLLFYGRLK-NLKGHDLNQAVEESLKSVNLFHGGVADIPAgKYSGGMKRRLS 732
Cdd:PRK13634 80 LKPLRKKVGIVfqfPEHQLFEETV---EKDICFGPMNfGVSEEDAKQKAREMIELVGLPEELLARSPF-ELSGGQMRRVA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 733 VAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKlhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
604-808 |
1.09e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 72.46 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-----KDMDKVYISMGVC---PQHDLLWE 675
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSstskqKEIKPVRKKVGVVfqfPESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 676 TLTgkEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHGGVADIPAgKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP 755
Cdd:PRK13643 101 TVL--KDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF-ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 22331655 756 ASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13643 178 KARIEMMQLFESIHQSGqTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
607-807 |
1.37e-13 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 74.40 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICkdmdkvyismgvcpqhdlLWEtltgKEHL--- 683
Cdd:COG4618 350 GVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLS------------------QWD----REELgrh 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 ---------LFYG-------RLKNLKGhdlnQAVEESLKSVNLfHGGVADIPAGkY-----------SGGMKRRLSVAIS 736
Cdd:COG4618 408 igylpqdveLFDGtiaeniaRFGDADP----EKVVAAAKLAGV-HEMILRLPDG-YdtrigeggarlSGGQRQRIGLARA 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 737 LIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMeEAEFLCDRLGIFVDGRLQCIGnPKE 807
Cdd:COG4618 482 LYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARgATVVVITHRP-SLLAAVDKLLVLRDGRVQAFG-PRD 551
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
583-808 |
1.41e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 72.08 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 583 GIVCDNLKKVYQGrdGNP-PKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-----KD 656
Cdd:PRK13649 2 GINLQNVSYTYQA--GTPfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknKD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 657 MDKVYISMGVC---PQHDLLWETLTgkEHLLFYGRLKNLKGHDLNQAVEESLKSV----NLFHGGVADIpagkySGGMKR 729
Cdd:PRK13649 80 IKQIRKKVGLVfqfPESQLFEETVL--KDVAFGPQNFGVSQEEAEALAREKLALVgiseSLFEKNPFEL-----SGGQMR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 730 RLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGmTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
559-800 |
1.92e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 73.95 E-value: 1.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 559 MEKLDVIQEKETVKQLIF-----ERSKNHGIVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFIN 633
Cdd:COG0488 286 LEKLEREEPPRRDKTVEIrfpppERLGKKVLELEGLSKSYGD------KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 634 MMTGLVKPSSGSaFVQGldickdmDKVyiSMGVCPQH-DLLWETLTGKEHLlfygrlknlkGHDLNQAVEESLKSV---N 709
Cdd:COG0488 360 LLAGELEPDSGT-VKLG-------ETV--KIGYFDQHqEELDPDKTVLDEL----------RDGAPGGTEQEVRGYlgrF 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 710 LFHGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRinlwTVIKRAKKH--AAIILTTHSMeeaEFL 787
Cdd:COG0488 420 LFSGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETL----EALEEALDDfpGTVLLVSHDR---YFL 492
|
250
....*....|....*.
gi 22331655 788 ---CDRLGIFVDGRLQ 800
Cdd:COG0488 493 drvATRILEFEDGGVR 508
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
607-754 |
4.63e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 72.79 E-value: 4.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldickdmdkvYISMGVCPQHDLLWETLT-------- 678
Cdd:COG0488 16 DVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK----------GLRIGYLPQEPPLDDDLTvldtvldg 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 679 ------------------------GKEHLLFYGRLKNLKGHDLNQAVEESLKSVNlFHGGVADIPAGKYSGGMKRRLSVA 734
Cdd:COG0488 86 daelraleaeleeleaklaepdedLERLAELQEEFEALGGWEAEARAEEILSGLG-FPEEDLDRPVSELSGGWRRRVALA 164
|
170 180
....*....|....*....|
gi 22331655 735 ISLIGSPKVVYMDEPSTGLD 754
Cdd:COG0488 165 RALLSEPDLLLLDEPTNHLD 184
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
584-808 |
5.28e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 70.42 E-value: 5.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgNPPKL-AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFV------QGLDICKD 656
Cdd:PRK13645 7 IILDNVSYTYAKK--TPFEFkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVgdyaipANLKKIKE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 657 MDKVYISMGVC---PQHDLLWETLtgkEHLLFYGRLkNLkGHDLNQA---VEESLKSVNLFHGGVADIPAgKYSGGMKRR 730
Cdd:PRK13645 85 VKRLRKEIGLVfqfPEYQLFQETI---EKDIAFGPV-NL-GENKQEAykkVPELLKLVQLPEDYVKRSPF-ELSGGQKRR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 731 LSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAA--IILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKkrIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
607-813 |
1.52e-12 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 71.29 E-value: 1.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYISMGVcpqhdllweTLTGKEHLLFY 686
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL-VQYDHHYLHRQV---------ALVGQEPVLFS 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLKNLKGHDLNQAVEESLKSVNLF---HGGVADIPAGKY----------SGGMKRRLSVAISLIGSPKVVYMDEPSTGL 753
Cdd:TIGR00958 569 GSVRENIAYGLTDTPDEEIMAAAKAanaHDFIMEFPNGYDtevgekgsqlSGGQKQRIAIARALVRKPRVLILDEATSAL 648
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 754 DPASRINLWTVIKRAKKhaAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKELKGRYG 813
Cdd:TIGR00958 649 DAECEQLLQESRSRASR--TVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMEDQG 705
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
608-806 |
1.52e-12 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 68.60 E-value: 1.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSafvqgldiCKDMDKVYIsmGVCPQHDLLWETLTgkehlLFYG 687
Cdd:PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV--------IKRNGKLRI--GYVPQKLYLDTTLP-----LTVN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 688 RLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK- 766
Cdd:PRK09544 88 RFLRLRPGTKKEDILPALKRVQAGH--LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDq 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 22331655 767 -RAKKHAAIILTTHSM-----EEAEFLCdrlgifVDGRLQCIGNPK 806
Cdd:PRK09544 166 lRRELDCAVLMVSHDLhlvmaKTDEVLC------LNHHICCSGTPE 205
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
607-807 |
1.60e-12 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 68.64 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDKvyiSMGVCPQHdllwetltgkEH 682
Cdd:PRK13548 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdwspAELAR---RRAVLPQH----------SS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLF---------YGRLKN-LKGHDLNQAVEESLKSVNLFHGGVADIPAgkYSGGMKRRLSVAISLI------GSPKVVYM 746
Cdd:PRK13548 87 LSFpftveevvaMGRAPHgLSRAEDDALVAAALAQVDLAHLAGRDYPQ--LSGGEQQRVQLARVLAqlwepdGPPRWLLL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 747 DEPSTGLDPASRINLWTVIKR-AKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:PRK13548 165 DEPTSALDLAHQHHVLRLARQlAHERgLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
584-808 |
1.76e-12 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 68.24 E-value: 1.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDgnppklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQglDICKDMDKvyiS 663
Cdd:PRK11264 4 IEVKNLVKKFHGQT------VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG--DITIDTAR---S 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 MGvcPQHDLLWETltgKEHL--------LFYGR--LKNL-------KGHDLNQAVE---ESLKSVNLfhGGVADIPAGKY 723
Cdd:PRK11264 73 LS--QQKGLIRQL---RQHVgfvfqnfnLFPHRtvLENIiegpvivKGEPKEEATArarELLAKVGL--AGKETSYPRRL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 724 SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRlGIFVD-GRLQC 801
Cdd:PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQlAQEKRTMVIVTHEMSFARDVADR-AIFMDqGRIVE 224
|
....*..
gi 22331655 802 IGNPKEL 808
Cdd:PRK11264 225 QGPAKAL 231
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
607-808 |
2.04e-12 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 67.71 E-value: 2.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC---KDMDKVYISMGVCPQHDLLWETLTGKEHL 683
Cdd:COG1126 19 GISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTdskKDINKLRRKVGMVFQQFNLFPHLTVLENV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 LfYGRLKnLKGHDLNQAVE---ESLKSVnlfhgGVADiPAGKY----SGGMKRRlsVAI--SLIGSPKVVYMDEPSTGLD 754
Cdd:COG1126 99 T-LAPIK-VKKMSKAEAEEramELLERV-----GLAD-KADAYpaqlSGGQQQR--VAIarALAMEPKVMLFDEPTSALD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 755 PAsRIN--LwTVIKR-AKKHAAIILTTHSMEEAEFLCDRLgIFVD-GRLQCIGNPKEL 808
Cdd:COG1126 169 PE-LVGevL-DVMRDlAKEGMTMVVVTHEMGFAREVADRV-VFMDgGRIVEEGPPEEF 223
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
608-779 |
2.18e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 66.90 E-value: 2.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCPQHDLLWETLTGKEHLLFyg 687
Cdd:PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLY-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 688 rlkNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK- 766
Cdd:PRK13540 98 ---DIHFSPGAVGITELCRLFSLEH--LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQe 172
|
170
....*....|...
gi 22331655 767 RAKKHAAIILTTH 779
Cdd:PRK13540 173 HRAKGGAVLLTSH 185
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
587-798 |
2.63e-12 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 68.03 E-value: 2.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRDGnppklavC-GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDicKDMDKVYiSM- 664
Cdd:PRK11701 10 RGLTKLYGPRKG-------CrDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD--GQLRDLY-ALs 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 665 ------------GVCPQH--DLL----------WETL--TGKEHllfYGRLKNLKGHDLnQAVEESLKSVNlfhggvaDI 718
Cdd:PRK11701 80 eaerrrllrtewGFVHQHprDGLrmqvsaggniGERLmaVGARH---YGDIRATAGDWL-ERVEIDAARID-------DL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 719 PAgKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVD 796
Cdd:PRK11701 149 PT-TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlvRELGLAVVIVTHDLAVARLLAHRLLVMKQ 227
|
..
gi 22331655 797 GR 798
Cdd:PRK11701 228 GR 229
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
602-799 |
2.73e-12 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 66.30 E-value: 2.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCpqhdllweTLTG-- 679
Cdd:cd03215 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA--------YVPEdr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 680 KEHLLFygrlknlkghdLNQAVEEslksvNLFhggvadIPAGkYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRI 759
Cdd:cd03215 85 KREGLV-----------LDLSVAE-----NIA------LSSL-LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 760 NLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:cd03215 142 EIYRLIRELADAgKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
602-812 |
3.54e-12 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 70.19 E-value: 3.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYI--SMGVCPQhdllwetltg 679
Cdd:COG1132 353 RPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDI-RDLTLESLrrQIGVVPQ---------- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 680 kEHLLFYGRLK-NLKGHDLN---QAVEESLKSVNLfHGGVADIPAG----------KYSGGMKRRLSVAISLIGSPKVVY 745
Cdd:COG1132 422 -DTFLFSGTIReNIRYGRPDatdEEVEEAAKAAQA-HEFIEALPDGydtvvgergvNLSGGQRQRIAIARALLKDPPILI 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 746 MDEPSTGLDPASRINLWTVIKRAKKHAAIILTTH---SMEEAeflcDRlgIFV--DGRLQCIGNPKEL---KGRY 812
Cdd:COG1132 500 LDEATSALDTETEALIQEALERLMKGRTTIVIAHrlsTIRNA----DR--ILVldDGRIVEQGTHEELlarGGLY 568
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
584-805 |
3.69e-12 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 66.75 E-value: 3.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgRDGNPPKLavCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYI 662
Cdd:cd03244 3 IEFKNVSLRY--RPNLPPVL--KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMGVCPQhdllwetltgkEHLLFYGRL-KNLKGHD------LNQAVEE-SLKSV--NLFHGGVADIPAGK--YSGGMKRR 730
Cdd:cd03244 79 RISIIPQ-----------DPVLFSGTIrSNLDPFGeysdeeLWQALERvGLKEFveSLPGGLDTVVEEGGenLSVGQRQL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 731 LSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHS----MEeaeflCDRLGIFVDGRLQCIGNP 805
Cdd:cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRldtiID-----SDRILVLDKGRVVEFDSP 221
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
602-799 |
4.16e-12 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 65.41 E-value: 4.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCPQhdllwetltgKE 681
Cdd:cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQ----------RP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 682 HLlFYGRLKNlkghdlnqaveeslksvNLfhggvadipAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:cd03247 85 YL-FDTTLRN-----------------NL---------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL 137
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 762 WTVIKRAKKHAAIILTTH---SMEEAeflcDRLGIFVDGRL 799
Cdd:cd03247 138 LSLIFEVLKDKTLIWITHhltGIEHM----DKILFLENGKI 174
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
609-821 |
5.50e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 66.53 E-value: 5.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 609 SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLD-ICKDMDKVYISMGVcpQHDLLWETLTGKEHLLFyG 687
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDhTTTPPSRRPVSMLF--QENNLFSHLTVAQNIGL-G 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 688 RLKNLK-GHDLNQAVEESLKSVNLfHGGVADIPaGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK 766
Cdd:PRK10771 96 LNPGLKlNAAQREKLHAIARQMGI-EDLLARLP-GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 767 R--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL-KGRYGGSYVLTIT 821
Cdd:PRK10771 174 QvcQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELlSGKASASALLGIK 231
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
607-808 |
8.30e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 66.66 E-value: 8.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI-CKDMDKVYISMGVCPQH-DLLWETLTGKEHLL 684
Cdd:PRK13642 25 GVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLtAENVWNLRRKIGMVFQNpDNQFVGATVEDDVA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 685 FYGRLKNLKGHDLNQAVEESLKSVNLFHGGVADiPAgKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTV 764
Cdd:PRK13642 105 FGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-PA-RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRV 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 22331655 765 IK--RAKKHAAIILTTHSMEEAEFlCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13642 183 IHeiKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
584-808 |
9.63e-12 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 67.82 E-value: 9.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYqgrdGNPPK----------------------LAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP 641
Cdd:COG4175 4 IEVRNLYKIF----GKRPEralklldqgkskdeilektgqtVGVNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 642 SSGSAFVQGLDICKdMDKV--------YISMgVCPQHDLL-WETL---TGkehllfYG-RLKNLKGHDLNQAVEESLKSV 708
Cdd:COG4175 80 TAGEVLIDGEDITK-LSKKelrelrrkKMSM-VFQHFALLpHRTVlenVA------FGlEIQGVPKAERRERAREALELV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 709 NLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPasrinlwtVIKR----------AKKHAAIILTT 778
Cdd:COG4175 152 GL--AGWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDP--------LIRRemqdellelqAKLKKTIVFIT 221
|
250 260 270
....*....|....*....|....*....|
gi 22331655 779 HSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG4175 222 HDLDEALRLGDRIAIMKDGRIVQIGTPEEI 251
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
576-824 |
1.09e-11 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 68.75 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 576 FERSKNHGivcDNLKKVYqgrdGNPPKLA-----------VCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSS- 643
Cdd:PLN03211 51 FENMKNKG---SNIKRIL----GHKPKISdetrqiqertiLNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNf 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 644 -GSAFVQGLDICKDMDKvyiSMGVCPQHDLLWETLTGKEHLLFYG--RLKNLKGHDLNQAVEESLKSV------------ 708
Cdd:PLN03211 124 tGTILANNRKPTKQILK---RTGFVTQDDILYPHLTVRETLVFCSllRLPKSLTKQEKILVAESVISElgltkcentiig 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 709 NLFHGGVadipagkySGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL-WTVIKRAKKHAAIILTTHSMEEAEF- 786
Cdd:PLN03211 201 NSFIRGI--------SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLvLTLGSLAQKGKTIVTSMHQPSSRVYq 272
|
250 260 270
....*....|....*....|....*....|....*...
gi 22331655 787 LCDRLGIFVDGRLQCIGnpkelKGRYGGSYVLTITTSP 824
Cdd:PLN03211 273 MFDSVLVLSEGRCLFFG-----KGSDAMAYFESVGFSP 305
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
602-808 |
1.11e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 66.58 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGL--------DICKDMDKVYISmgvcPQHDLL 673
Cdd:PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlseetvwDVRRQVGMVFQN----PDNQFV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 674 WETLtgkEHLLFYGrLKN--LKGHDLNQAVEESLKSVNL--FhggvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEP 749
Cdd:PRK13635 96 GATV---QDDVAFG-LENigVPREEMVERVDQALRQVGMedF----LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22331655 750 STGLDPASRINLWTVIKRAKKHAAI--ILTTHSMEEAEFlCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13635 168 TSMLDPRGRREVLETVRQLKEQKGItvLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI 227
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
595-798 |
1.32e-11 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 64.80 E-value: 1.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 595 GRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldickdmdkvyiSMGVCPQHD-LL 673
Cdd:cd03250 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEPwIQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 674 WETLtgKEHLLF--------YGR----------LKNLKGHDLNQAVEeslKSVNLfhggvadipagkySGGMKRRLSVAI 735
Cdd:cd03250 79 NGTI--RENILFgkpfdeerYEKvikacalepdLEILPDGDLTEIGE---KGINL-------------SGGQKQRISLAR 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 736 SLIGSPKVVYMDEPSTGLDPASRINLWT--VIKRAKKHAAIILTTHSMeeaEFL--CDRLGIFVDGR 798
Cdd:cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNKTRILVTHQL---QLLphADQIVVLDNGR 204
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
609-799 |
1.70e-11 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 67.74 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 609 SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldickdmDKVYIS---------MGVCPQHDLLWETLTG 679
Cdd:COG3845 25 SLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDG-------KPVRIRsprdaialgIGMVHQHFMLVPNLTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 680 KEHLLfYGrLKNLKGHDLN-QAVEESLK--------SVNLfHGGVADIPAgkysgGMKRRlsVAI--SLIGSPKVVYMDE 748
Cdd:COG3845 98 AENIV-LG-LEPTKGGRLDrKAARARIRelseryglDVDP-DAKVEDLSV-----GEQQR--VEIlkALYRGARILILDE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 22331655 749 PSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:COG3845 168 PTAVLTPQEADELFEILRRlAAEGKSIIFITHKLREVMAIADRVTVLRRGKV 219
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
588-798 |
1.86e-11 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 66.29 E-value: 1.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQGRDGNppKLAVCGLSLAVPSGECFGMLGPNGAGK--TSFINMmtGLVKPS---SGSAFVQGLDIC----KDMD 658
Cdd:PRK09473 17 DLRVTFSTPDGD--VTAVNDLNFSLRAGETLGIVGESGSGKsqTAFALM--GLLAANgriGGSATFNGREILnlpeKELN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 659 KV---YISMGVC-PQHDL-----LWETLTgkEHLLFYgrlknlKGHDLNQAVEESLKSVNlfhggVADIPAGK------- 722
Cdd:PRK09473 93 KLraeQISMIFQdPMTSLnpymrVGEQLM--EVLMLH------KGMSKAEAFEESVRMLD-----AVKMPEARkrmkmyp 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 723 --YSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKK--HAAIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:PRK09473 160 heFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRefNTAIIMITHDLGVVAGICDKVLVMYAGR 239
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
608-808 |
2.27e-11 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 65.39 E-value: 2.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDK-VYISMGVCPQHDLLWETLTGKEhLLFY 686
Cdd:PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKeVARRIGLLAQNATTPGDITVQE-LVAR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GR------LKNLKGHDlNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRIN 760
Cdd:PRK10253 105 GRyphqplFTRWRKED-EEAVTKAMQATGITH--LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQID 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 22331655 761 LWTVIKRAKKHAAIILTT--HSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK10253 182 LLELLSELNREKGYTLAAvlHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
587-799 |
3.24e-11 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 64.71 E-value: 3.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQ--GRDGNPPKLAVC-GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-------- 655
Cdd:PRK10419 7 SGLSHHYAhgGLSGKHQHQTVLnNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnraqrka 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 656 ---DMDKVY---ISmGVCPQHDLLWETLTGKEHLLfygrlkNLKGHDLNQAVEESLKSVNLfHGGVADIPAGKYSGGMKR 729
Cdd:PRK10419 87 frrDIQMVFqdsIS-AVNPRKTVREIIREPLRHLL------SLDKAERLARASEMLRAVDL-DDSVLDKRPPQLSGGQLQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 730 RLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK--RAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKklQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
607-799 |
3.51e-11 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 64.70 E-value: 3.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSafvqgldickdmdkvyISMGVCPQHDLLWETltgkeHLLFY 686
Cdd:PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE----------------LLAGTAPLAEAREDT-----RLMFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 -GRL-------KN----LKGHDLNQAvEESLKSVNLfHGGVADIPAGkYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLD 754
Cdd:PRK11247 89 dARLlpwkkviDNvglgLKGQWRDAA-LQALAAVGL-ADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGALD 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 22331655 755 PASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK11247 166 ALTRIEMQDLIESlwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
608-808 |
3.88e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 64.85 E-value: 3.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC-----KDMDKVYISMGVC---PQHDLLWETLtg 679
Cdd:PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnKNLKKLRKKVSLVfqfPEAQLFENTV-- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 680 kehllfygrLKNLKGHDLNQAVEES---------LKSVNLfHGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPS 750
Cdd:PRK13641 104 ---------LKDVEFGPKNFGFSEDeakekalkwLKKVGL-SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 751 TGLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQKAGhTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
584-799 |
4.60e-11 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 63.61 E-value: 4.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRDGnppKLAVC-GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVY 661
Cdd:COG4181 9 IELRGLTKTVGTGAG---ELTILkGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFAlDEDARA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 I----SMGVCPQHDLLWETLTGkehllfygrLKN------LKGH-DLNQAVEESLKSVNLFHggvadiPAGKY----SGG 726
Cdd:COG4181 86 RlrarHVGFVFQSFQLLPTLTA---------LENvmlpleLAGRrDARARARALLERVGLGH------RLDHYpaqlSGG 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 727 MKRRLSVAISLIGSPKVVYMDEPSTGLDPASRInlwTVIK-----RAKKHAAIILTTHSMEEAEfLCDRLGIFVDGRL 799
Cdd:COG4181 151 EQQRVALARAFATEPAILFADEPTGNLDAATGE---QIIDllfelNRERGTTLVLVTHDPALAA-RCDRVLRLRAGRL 224
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
295-477 |
4.70e-11 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 65.49 E-value: 4.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 295 VKEMPKQETRlrMDMASLIGPIFFTWVILLLFPVILTSLVYEKQQRLRIIMKMHGLGDAPYWMISY-AYFLAISTLYIVC 373
Cdd:pfam12698 147 VESTPLFNPQ--SGYAYYLVGLILMIIILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKIlGDFLVGLLQLLII 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 374 L-MIFGSAIGlkffrFNDYTIQFMFYFLYINLQISIAFLVSSAFSKAVTASVVayIYVFGSGLLGAFLFQFLIESLSFPR 452
Cdd:pfam12698 225 LlLLFGIGIP-----FGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSI--IGIVILLLSGFFGGLFPLEDPPSFL 297
|
170 180
....*....|....*....|....*
gi 22331655 453 RWIFVMelYPGFSLYRGLYEFSQYA 477
Cdd:pfam12698 298 QWIFSI--IPFFSPIDGLLRLIYGD 320
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
587-813 |
5.67e-11 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 66.07 E-value: 5.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSafvqgLDICKDMDKVYISMGV 666
Cdd:PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT-----VDIKGSAALIAISSGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 667 CPQhdllwetLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYM 746
Cdd:PRK13545 97 NGQ-------LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADI--GKFIYQPVKTYSSGMKSRLGFAISVHINPDILVI 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 747 DEP-STGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYG 813
Cdd:PRK13545 168 DEAlSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
583-789 |
6.05e-11 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 64.13 E-value: 6.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 583 GIVCDNLKKVYqgRDGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYI 662
Cdd:PRK15056 6 GIVVNDVTVTW--RNGHT---ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 SMgvCPQHDLL-WETLTGKEHLLFYGR------LKNLKGHDlNQAVEESLKSVNLFHGGVADIpaGKYSGGMKRRLSVAI 735
Cdd:PRK15056 81 AY--VPQSEEVdWSFPVLVEDVVMMGRyghmgwLRRAKKRD-RQIVTAALARVDMVEFRHRQI--GELSGGQKKRVFLAR 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 736 SLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIIL-TTHSMEEAEFLCD 789
Cdd:PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLvSTHNLGSVTEFCD 210
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
607-818 |
7.28e-11 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 63.33 E-value: 7.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYISMGVCPQHDLLWETlTGKEHLLf 685
Cdd:cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEPVLFDG-TIAENIR- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 686 YGRlknlkgHDLNQA-VEESLKSVNLfHGGVADIPAG----------KYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLD 754
Cdd:cd03249 99 YGK------PDATDEeVEEAAKKANI-HDFIMSLPDGydtlvgergsQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 755 PASRINLWTVIKRAKKHAAIILTTH---SMEEAeflcDRLGIFVDGRLQCIGNPKELKGRYGGSYVL 818
Cdd:cd03249 172 AESEKLVQEALDRAMKGRTTIVIAHrlsTIRNA----DLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
608-799 |
7.62e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 63.96 E-value: 7.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFI---NMMTGLVK--PSSGSAFVQGLDICKDMDKVYISMGVcpqhDLLWETLTGKEH 682
Cdd:PRK14271 40 VSMGFPARAVTSLMGPTGSGKTTFLrtlNRMNDKVSgyRYSGDVLLGGRSIFNYRDVLEFRRRV----GMLFQRPNPFPM 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLFYGRLKNLKGHDL------NQAVEESLKSVNLFHG---GVADIPAgKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGL 753
Cdd:PRK14271 116 SIMDNVLAGVRAHKLvprkefRGVAQARLTEVGLWDAvkdRLSDSPF-RLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 22331655 754 DPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK14271 195 DPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
588-808 |
9.55e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 64.10 E-value: 9.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 588 NLKKVYQGRDGNPPKlAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVC 667
Cdd:PRK13631 26 NLYCVFDEKQENELV-ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 668 PQHDLLWETLTGKEHLLF----YGRLKNLKGHD-------LNQAVEESLKSVNLFHGGVA------DIPAGKYSGGMKRR 730
Cdd:PRK13631 105 SKKIKNFKELRRRVSMVFqfpeYQLFKDTIEKDimfgpvaLGVKKSEAKKLAKFYLNKMGlddsylERSPFGLSGGQKRR 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 731 LSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK13631 185 VAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNkTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
610-808 |
1.18e-10 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 64.28 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 610 LAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDKVYIS---MGVCPQHDLLWETLTGKEHLLFY 686
Cdd:PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE----KRMNDVPPAergVGMVFQSYALYPHLSVAENMSFG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK 766
Cdd:PRK11000 100 LKLAGAKKEEINQRVNQVAEVLQLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 22331655 767 RAKKH--AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK11000 178 RLHKRlgRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
587-799 |
1.18e-10 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 64.93 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYqgrdgnPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGV 666
Cdd:PRK11288 8 DGIGKTF------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 667 CPQHD---LLWEtLTGKEHLLFyGRLKNLKG----HDLNQAVEESLKsvnlfHGGV---ADIPAGKYSGGMKRRLSVAIS 736
Cdd:PRK11288 82 AIIYQelhLVPE-MTVAENLYL-GQLPHKGGivnrRLLNYEAREQLE-----HLGVdidPDTPLKYLSIGQRQMVEIAKA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22331655 737 LIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEgRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
584-808 |
1.30e-10 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 62.79 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI--CKDMD--K 659
Cdd:COG4604 2 IEIKNVSKRYGG------KVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVatTPSRElaK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VyisMGVCPQHDLLWETLTGKEhLLFYGRLKNLKGHdLN----QAVEESLKSVNLfhggvADIpAGKY----SGGMKRRL 731
Cdd:COG4604 76 R---LAILRQENHINSRLTVRE-LVAFGRFPYSKGR-LTaedrEIIDEAIAYLDL-----EDL-ADRYldelSGGQRQRA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 732 SVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRA--KKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLadELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEI 223
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
608-809 |
1.68e-10 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 62.86 E-value: 1.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYIS---MGVCPQHDLLWETLTGKEHL 683
Cdd:PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAmSRSRLYTVrkrMSMLFQSGALFTDMNVFDNV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 LFYGR-LKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPasrINLW 762
Cdd:PRK11831 106 AYPLReHTQLPAPLLHSTVMMKLEAVGL--RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP---ITMG 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 22331655 763 TVIKRAKK--HA---AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 809
Cdd:PRK11831 181 VLVKLISElnSAlgvTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
607-805 |
1.76e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 61.66 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYISMGVCPQhdllwetltgkEHLLF 685
Cdd:cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTiPLEDLRSSLTIIPQ-----------DPTLF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 686 YGRLK-NLKGHDlNQAVEESLKSVNLFHGGVadipagKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTV 764
Cdd:cd03369 95 SGTIRsNLDPFD-EYSDEEIYGALRVSEGGL------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKT 167
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 765 IKRAKKHAAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNP 805
Cdd:cd03369 168 IREEFTNSTILTIAHRLRTI-IDYDKILVMDAGEVKEYDHP 207
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
579-808 |
1.77e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 62.90 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 579 SKNHGIVCDNLKKVYQgrdgNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSafvqgldickdmD 658
Cdd:PRK13640 1 MKDNIVEFKHVSFTYP----DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP------------N 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 659 KVYISMGVCPQHDLLWEtLTGKEHLLFYGRLKNLKGHDL---------NQAVEESlKSVNLFHGGVADIPAGKY------ 723
Cdd:PRK13640 65 SKITVDGITLTAKTVWD-IREKVGIVFQNPDNQFVGATVgddvafgleNRAVPRP-EMIKIVRDVLADVGMLDYidsepa 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 724 --SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK--RAKKHAAIILTTHSMEEAEfLCDRLGIFVDGRL 799
Cdd:PRK13640 143 nlSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRklKKKNNLTVISITHDIDEAN-MADQVLVLDDGKL 221
|
....*....
gi 22331655 800 QCIGNPKEL 808
Cdd:PRK13640 222 LAQGSPVEI 230
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
596-841 |
2.13e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 65.00 E-value: 2.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 596 RDGNPPKLAvcGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK----DMDKVyisMGVCPQhd 671
Cdd:PLN03232 1245 RPGLPPVLH--GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfgltDLRRV---LSIIPQ-- 1317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 672 llwetltgkEHLLFYGRLK-NL------KGHDLNQAVEES-LKSV---NLFhGGVADIPAG--KYSGGMKRRLSVAISLI 738
Cdd:PLN03232 1318 ---------SPVLFSGTVRfNIdpfsehNDADLWEALERAhIKDVidrNPF-GLDAEVSEGgeNFSVGQRQLLSLARALL 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVL 818
Cdd:PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
|
250 260
....*....|....*....|....
gi 22331655 819 TI-TTSPEHEKDVETLVQEVSSNA 841
Cdd:PLN03232 1467 MVhSTGPANAQYLSNLVFERRENG 1490
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
602-791 |
2.40e-10 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 61.68 E-value: 2.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 602 KLAVC-GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFV----QGLDICK--DMDKVYI---SMGVCPQH- 670
Cdd:COG4778 23 RLPVLdGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhdgGWVDLAQasPREILALrrrTIGYVSQFl 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 671 ---------DLLWETL--TGKEHLLFYGRLKNLKGHdLNqaVEESLksvnlfhggvADIPAGKYSGGMKRRLSVAISLIG 739
Cdd:COG4778 103 rviprvsalDVVAEPLleRGVDREEARARARELLAR-LN--LPERL----------WDLPPATFSGGEQQRVNIARGFIA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 22331655 740 SPKVVYMDEPSTGLDPASRINLWTVIKRAKKH-AAIILTTHSMEEAEFLCDRL 791
Cdd:COG4778 170 DPPLLLLDEPTASLDAANRAVVVELIEEAKARgTAIIGIFHDEEVREAVADRV 222
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
604-798 |
2.79e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 63.69 E-value: 2.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGlVKPS---SGSAFVQGLDI----CKDMDKVYISmgVCPQHDLLWET 676
Cdd:TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGSPLkasnIRDTERAGIV--IIHQELTLVPE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 677 LTGKEHlLFYGRLKNLKGHDLNQAV-----EESLKSVNLFHGGVAdIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPST 751
Cdd:TIGR02633 93 LSVAEN-IFLGNEITLPGGRMAYNAmylraKNLLRELQLDADNVT-RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSS 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 22331655 752 GLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:TIGR02633 171 SLTEKETEILLDIIRDLKAHGvACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
607-798 |
2.82e-10 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 60.74 E-value: 2.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPS---SGSAFVQGLDIcKDMDKVYISMGV-CPQHDLLWETLTGKEH 682
Cdd:cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPY-KEFAEKYPGEIIyVSEEDVHFPTLTVRET 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLFYGRLKNlkghdlNQAVEeslksvnlfhgGVadipagkySGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLW 762
Cdd:cd03233 104 LDFALRCKG------NEFVR-----------GI--------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 22331655 763 TVIK---RAKKHAAIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:cd03233 159 KCIRtmaDVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
607-807 |
3.63e-10 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 61.67 E-value: 3.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYISM--GVCPQHDLLWETLTGKEHLL 684
Cdd:COG4559 19 DVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPL-AAWSPWELARrrAVLPQHSSLAFPFTVEEVVA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 685 FyGRLKNLKGH-DLNQAVEESLKSVnlfhgGVADIPAGKY---SGGMKRRLSVAISLI-------GSPKVVYMDEPSTGL 753
Cdd:COG4559 98 L-GRAPHGSSAaQDRQIVREALALV-----GLAHLAGRSYqtlSGGEQQRVQLARVLAqlwepvdGGPRWLFLDEPTSAL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 22331655 754 DPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 807
Cdd:COG4559 172 DLAHQHAVLRLARQlARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEE 226
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
620-779 |
3.76e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 60.33 E-value: 3.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 620 MLGPNGAGKTSFINMM-----TGLVKpssGSAFVQGLDICKDMDKvyiSMGVCPQHDLLWETLTGKEHLLFYGRLKNLkg 694
Cdd:cd03232 38 LMGESGAGKTTLLDVLagrktAGVIT---GEILINGRPLDKNFQR---STGYVEQQDVHSPNLTVREALRFSALLRGL-- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 695 hdlnqAVEEslksvnlfhggvadipagkysggmKRRLSVAISLIGSPKVVYMDEPSTGLDPASRinlWTVIKRAKKHA-- 772
Cdd:cd03232 110 -----SVEQ------------------------RKRLTIGVELAAKPSILFLDEPTSGLDSQAA---YNIVRFLKKLAds 157
|
....*....
gi 22331655 773 --AIILTTH 779
Cdd:cd03232 158 gqAILCTIH 166
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
607-808 |
3.85e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 60.23 E-value: 3.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGL--VKPSSGSAFVQGLDIcKDM---DKVYISMGVCPQHDllwETLTGke 681
Cdd:cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDI-TDLppeERARLGIFLAFQYP---PEIPG-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 682 hllfygrLKNlkghdlnqavEESLKSVNLfhggvadipagKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:cd03217 92 -------VKN----------ADFLRYVNE-----------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 22331655 762 WTVIKR-AKKHAAIILTTHSMEEAEFL-CDRLGIFVDGRLQCIGnPKEL 808
Cdd:cd03217 144 AEVINKlREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG-DKEL 191
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
607-794 |
5.16e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 61.21 E-value: 5.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFI---NMMT---------GLVKPSSGSAFVQGLDICKDMDKVyiSMgVCPQHDLLW 674
Cdd:PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLkclNRMNelesevrveGRVEFFNQNIYERRVNLNRLRRQV--SM-VHPKPNLFP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ETLTGKehlLFYGrLKNLKGH---DLNQAVEESLKSVNLF-------HGGVADIpagkySGGMKRRLSVAISLIGSPKVV 744
Cdd:PRK14258 102 MSVYDN---VAYG-VKIVGWRpklEIDDIVESALKDADLWdeikhkiHKSALDL-----SGGQQQRLCIARALAVKPKVL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 22331655 745 YMDEPSTGLDPASRINLWTVIK--RAKKHAAIILTTHSMEEAEFLCDRLGIF 794
Cdd:PRK14258 173 LMDEPCFGLDPIASMKVESLIQslRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
558-754 |
5.30e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.03 E-value: 5.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 558 EMEKLDViQEKETVKQLIF---ERSKNHGIVCDNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINM 634
Cdd:TIGR03719 295 ELLSQEF-QKRNETAEIYIppgPRLGDKVIEAENLTKAFGDK------LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRM 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 635 MTGLVKPSSGSaFVQGldickdmDKVYISMgVCPQHDLL------WETLTGKEHLLFYGRLK----------NLKGHDLN 698
Cdd:TIGR03719 368 ITGQEQPDSGT-IEIG-------ETVKLAY-VDQSRDALdpnktvWEEISGGLDIIKLGKREipsrayvgrfNFKGSDQQ 438
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 699 QAVeeslksvnlfhggvadipaGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLD 754
Cdd:TIGR03719 439 KKV-------------------GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
608-816 |
5.80e-10 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 60.32 E-value: 5.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYISMGVCPQHDLLWETlTGKEHLLfY 686
Cdd:cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGLVSQDVFLFND-TVAENIA-Y 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRlknlkgHDLNQA-VEESLKSVNLfHGGVADIPAG----------KYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP 755
Cdd:cd03251 99 GR------PGATREeVEEAARAANA-HEFIMELPEGydtvigergvKLSGGQRQRIAIARALLKDPPILILDEATSALDT 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22331655 756 ASRINLWTVIKRAKKHAAIILTTH---SMEEAeflcDRLGIFVDGRLQCIGNPKELKGRyGGSY 816
Cdd:cd03251 172 ESERLVQAALERLMKNRTTFVIAHrlsTIENA----DRIVVLEDGKIVERGTHEELLAQ-GGVY 230
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
604-799 |
6.14e-10 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 60.66 E-value: 6.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYI---SMGVCPQHDLLWETLTGK 680
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI-TDWQTAKImreAVAIVPEGRRVFSRMTVE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 681 EHLLFYGRLKnlkghDLNQAVEESLKSVNLFhggvadiP---------AGKYSGGMKRRLSVAISLIGSPKVVYMDEPST 751
Cdd:PRK11614 99 ENLAMGGFFA-----ERDQFQERIKWVYELF-------PrlherriqrAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 22331655 752 GLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK11614 167 GLAPIIIQQIFDTIEQLREQGmTIFLVEQNANQALKLADRGYVLENGHV 215
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
584-779 |
6.73e-10 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 58.23 E-value: 6.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGsafvqgldICKDMDKVYIS 663
Cdd:cd03221 1 IELENLSKTYGGK------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG--------IVTWGSTVKIG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 664 mgvcpqhdllwetltgkehllfYgrlknlkghdLNQaveeslksvnlfhggvadipagkYSGGMKRRLSVAISLIGSPKV 743
Cdd:cd03221 67 ----------------------Y----------FEQ-----------------------LSGGEKMRLALAKLLLENPNL 91
|
170 180 190
....*....|....*....|....*....|....*.
gi 22331655 744 VYMDEPSTGLDPASRINLWTVIKraKKHAAIILTTH 779
Cdd:cd03221 92 LLLDEPTNHLDLESIEALEEALK--EYPGTVILVSH 125
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
586-800 |
9.41e-10 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 59.83 E-value: 9.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 586 CDNLKKVYQgrDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQG--LDICKDMDKVYI- 662
Cdd:PRK11629 8 CDNLCKRYQ--EGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGqpMSKLSSAAKAELr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 --SMGVCPQHDLLWETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGS 740
Cdd:PRK11629 86 nqKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR--ANHRPSELSGGERQRVAIARALVNN 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 741 PKVVYMDEPSTGLDPASRINLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIfVDGRLQ 800
Cdd:PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGElnRLQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLT 224
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
584-836 |
1.08e-09 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 61.74 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQGrdgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGL--VKPSSGSaFVQGLDICKDMDKVY 661
Cdd:TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGR-IIYHVALCEKCGYVE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 662 ISMGV---CPQ---------------HDLLWETLTGKEHLLF------YGR---LKNL---------KGHDLNQAVEESL 705
Cdd:TIGR03269 74 RPSKVgepCPVcggtlepeevdfwnlSDKLRRRIRKRIAIMLqrtfalYGDdtvLDNVlealeeigyEGKEAVGRAVDLI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 706 KSVNLFHGgVADIpAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAAI--ILTTHSMEE 783
Cdd:TIGR03269 154 EMVQLSHR-ITHI-ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIsmVLTSHWPEV 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 22331655 784 AEFLCDRLGIFVDGRLQCIGNPKELKGRYggsyvltITTSPEHEKDVETLVQE 836
Cdd:TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVF-------MEGVSEVEKECEVEVGE 277
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
608-808 |
1.08e-09 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 60.19 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYI-SMGVCPQHDLLWETLTGKEhLLFY 686
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFArKVAYLPQQLPAAEGMTVRE-LVAI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GR------LKNLKGHDlNQAVEESLKSVNL--FHGGVADipagKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR 758
Cdd:PRK10575 109 GRypwhgaLGRFGAAD-REKVEEAISLVGLkpLAHRLVD----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 22331655 759 INLWTVIKR--AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK10575 184 VDVLALVHRlsQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
584-799 |
1.15e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 60.49 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 584 IVCDNLKKVYQgrDGNPPKL-AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSA-FV--------QGLDI 653
Cdd:PRK13651 3 IKVKNIVKIFN--KKLPTELkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIeWIfkdeknkkKTKEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 654 CKDMDKVYIS----------------MGVCPQ---HDLLWETLtgkEHLLFYGRLKnlKGHDLNQAVEESLKSVNLFHGG 714
Cdd:PRK13651 81 EKVLEKLVIQktrfkkikkikeirrrVGVVFQfaeYQLFEQTI---EKDIIFGPVS--MGVSKEEAKKRAAKYIELVGLD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 715 VADIPAGKY--SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRA-KKHAAIILTTHSMEEAEFLCDRL 791
Cdd:PRK13651 156 ESYLQRSPFelSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLnKQGKTIILVTHDLDNVLEWTKRT 235
|
....*...
gi 22331655 792 GIFVDGRL 799
Cdd:PRK13651 236 IFFKDGKI 243
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
612-791 |
2.29e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 61.66 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 612 VPSGECFGMLGPNGAGKTSFINMM-----TGLVkpSSGSAFVQGLDICKDMDKvyiSMGVCPQHDLLWETLTGKEHLLFY 686
Cdd:TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLaervtTGVI--TGGDRLVNGRPLDSSFQR---SIGYVQQQDLHLPTSTVRESLRFS 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRL---KNLKGHDLNQAVEESLKSVNL--FHGGVADIPAGKYSGGMKRRLSVAISLIGSPK-VVYMDEPSTGLDPASRin 760
Cdd:TIGR00956 861 AYLrqpKSVSKSEKMEYVEEVIKLLEMesYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKlLLFLDEPTSGLDSQTA-- 938
|
170 180 190
....*....|....*....|....*....|....*...
gi 22331655 761 lWTVIKRAKKHA----AIILTTH---SMEEAEFlcDRL 791
Cdd:TIGR00956 939 -WSICKLMRKLAdhgqAILCTIHqpsAILFEEF--DRL 973
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
608-812 |
4.42e-09 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 57.88 E-value: 4.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKdMDKVYI--SMGVCPQhdllwetltgkEHLLF 685
Cdd:cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLAL-ADPAWLrrQVGVVLQ-----------ENVLF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 686 YGRLK-NLKGHDLNQAVEESLKSVNLF--HGGVADIPAG----------KYSGGMKRRLSVAISLIGSPKVVYMDEPSTG 752
Cdd:cd03252 89 NRSIRdNIALADPGMSMERVIEAAKLAgaHDFISELPEGydtivgeqgaGLSGGQRQRIAIARALIHNPRILIFDEATSA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 753 LDPASRINLWTVIKRAKKHAAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKEL---KGRY 812
Cdd:cd03252 169 LDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELlaeNGLY 230
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
600-758 |
4.61e-09 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 57.87 E-value: 4.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 600 PPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMDKVYISMGVcpqhdllweTLTG 679
Cdd:cd03248 25 PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI-SQYEHKYLHSKV---------SLVG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 680 KEHLLFYGRLKNLKGHDLNQAVEESLKSVNL---FHGGVADIPAGKY----------SGGMKRRLSVAISLIGSPKVVYM 746
Cdd:cd03248 95 QEPVLFARSLQDNIAYGLQSCSFECVKEAAQkahAHSFISELASGYDtevgekgsqlSGGQKQRVAIARALIRNPQVLIL 174
|
170
....*....|..
gi 22331655 747 DEPSTGLDPASR 758
Cdd:cd03248 175 DEATSALDAESE 186
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
604-808 |
5.95e-09 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 57.38 E-value: 5.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP----SSG----------SAFVQGLDICKDMDKVYISMG-VCP 668
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGeilldgrpllPLSIRGRHIATIMQNPRTAFNpLFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 669 QHDLLWETLtgKEHLLFYgrlknlkghdlNQAVE---ESLKSVNLFHGG-VADIPAGKYSGGMKRRLSVAISLIGSPKVV 744
Cdd:TIGR02770 81 MGNHAIETL--RSLGKLS-----------KQARAlilEALEAVGLPDPEeVLKKYPFQLSGGMLQRVMIALALLLEPPFL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 745 YMDEPSTGLDPASRIN-LWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:TIGR02770 148 IADEPTTDLDVVNQARvLKLLRELRQLFGtGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
604-806 |
6.19e-09 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 57.72 E-value: 6.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVK----PSS-----GSAFVQGLDICKDMDKVYISMGVCPQHDLLW 674
Cdd:PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksAGShiellGRTVQREGRLARDIRKSRANTGYIFQQFNLV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ETLTGKEHLL--------FYGRLKNLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYM 746
Cdd:PRK09984 99 NRLSVLENVLigalgstpFWRTCFSWFTREQKQRALQALTRVGMVH--FAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 747 DEPSTGLDPAS-RINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRL------GIFVDGRLQCIGNPK 806
Cdd:PRK09984 177 DEPIASLDPESaRIVMDTLRDINQNDGiTVVVTLHQVDYALRYCERIvalrqgHVFYDGSSQQFDNER 244
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
612-794 |
7.59e-09 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 56.04 E-value: 7.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 612 VPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAfvqgldickDMDKVYISmgVCPQHdllwetltgkehllfygrlkn 691
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND---------EWDGITPV--YKPQY--------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 692 lkghdlnqaveeslksVNLfhggvadipagkySGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH 771
Cdd:cd03222 70 ----------------IDL-------------SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE 120
|
170 180
....*....|....*....|....*
gi 22331655 772 A--AIILTTHSMEEAEFLCDRLGIF 794
Cdd:cd03222 121 GkkTALVVEHDLAVLDYLSDRIHVF 145
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
600-779 |
8.03e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 56.78 E-value: 8.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 600 PPKLAVCGLSLA-------------VPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYIS-MG 665
Cdd:PRK13543 9 PPLLAAHALAFSrneepvfgpldfhVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAyLG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 666 VCPQhdlLWETLTGKEHLLFygrLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAiSLIGSPKVVY 745
Cdd:PRK13543 89 HLPG---LKADLSTLENLHF---LCGLHGRRAKQMPGSALAIVGL--AGYEDTLVRQLSAGQKKRLALA-RLWLSPAPLW 159
|
170 180 190
....*....|....*....|....*....|....*..
gi 22331655 746 -MDEPSTGLDPASrINLWTVIKRAKKHA--AIILTTH 779
Cdd:PRK13543 160 lLDEPYANLDLEG-ITLVNRMISAHLRGggAALVTTH 195
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
607-800 |
8.05e-09 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 57.10 E-value: 8.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKdMDKV------YISMGVCPQHDLLWETLTGK 680
Cdd:PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQ-MDEEaraklrAKHVGFVFQSFMLIPTLNAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 681 EHLLFYGRLKNLKGHDLNQAVEESLKSVNL----FHggvadIPAgKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLD-- 754
Cdd:PRK10584 107 ENVELPALLRGESSRQSRNGAKALLEQLGLgkrlDH-----LPA-QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDrq 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 22331655 755 PASRI-NLWTVIKRakKHA-AIILTTHSMEEAEfLCDRLGIFVDGRLQ 800
Cdd:PRK10584 181 TGDKIaDLLFSLNR--EHGtTLILVTHDLQLAA-RCDRRLRLVNGQLQ 225
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
615-794 |
8.80e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 59.03 E-value: 8.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 615 GECFGMLGPNGAGKTSFINMMTGLVKPSSGSAfvqgldickDMD-KV-----YISmgvcPQHDLLWETltgkehLLFYGR 688
Cdd:COG1245 366 GEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV---------DEDlKIsykpqYIS----PDYDGTVEE------FLRSAN 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 689 LKNLKGHDLNQAVEESLKSVNLFHGGVADIpagkySGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR- 767
Cdd:COG1245 427 TDDFGSSYYKTEIIKPLGLEKLLDKNVKDL-----SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRf 501
|
170 180
....*....|....*....|....*...
gi 22331655 768 -AKKHAAIILTTHSMEEAEFLCDRLGIF 794
Cdd:COG1245 502 aENRGKTAMVVDHDIYLIDYISDRLMVF 529
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
607-808 |
1.21e-08 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 56.61 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGL--VKPSSGSAFVQGLDIcKDMD-------KVYISMgvcpQH------- 670
Cdd:COG0396 18 GVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHpkYEVTSGSILLDGEDI-LELSpderaraGIFLAF----QYpveipgv 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 671 ---DLLWETLTGKehllfygRLKNLKGHDLNQAVEESLKSVNL----FHGGVADipagKYSGGMKRRLSVAISLIGSPKV 743
Cdd:COG0396 93 svsNFLRTALNAR-------RGEELSAREFLKLLKEKMKELGLdedfLDRYVNE----GFSGGEKKRNEILQMLLLEPKL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 744 VYMDEPSTGLDpasrinLW-------TVIKRAKKHAAIILTTHSmeeAEFL----CDRLGIFVDGRLQCIGnPKEL 808
Cdd:COG0396 162 AILDETDSGLD------IDalrivaeGVNKLRSPDRGILIITHY---QRILdyikPDFVHVLVDGRIVKSG-GKEL 227
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
554-812 |
1.62e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 56.75 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 554 DVSVEMEKLdviqekeTVKQLIFERSKnhgivcDNLKKVYQGRDGNPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFIN 633
Cdd:PRK13546 2 NVSVNIKNV-------TKEYRIYRTNK------ERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSN 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 634 MMTGLVKPSSGSAFVQGldickDMDKVYISMGVCPQhdllwetLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLfhG 713
Cdd:PRK13546 69 IIGGSLSPTVGKVDRNG-----EVSVIAISAGLSGQ-------LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSEL--G 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 714 GVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEP-STGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEFLCDRLG 792
Cdd:PRK13546 135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAlSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIA 214
|
250 260
....*....|....*....|
gi 22331655 793 IFVDGRLQCIGNPKELKGRY 812
Cdd:PRK13546 215 WIEGGKLKDYGELDDVLPKY 234
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
610-789 |
1.63e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 56.61 E-value: 1.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 610 LAVP-SGECFGMLGPNGAGKTSFINMMTGLVKPSSGS-----------AFVQGLDICKDMDKVY---ISMGVCPQH-DLL 673
Cdd:cd03236 20 LPVPrEGQVLGLVGPNGIGKSTALKILAGKLKPNLGKfddppdwdeilDEFRGSELQNYFTKLLegdVKVIVKPQYvDLI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 674 WETLTGKEHLLfygrlknLKGHDLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGL 753
Cdd:cd03236 100 PKAVKGKVGEL-------LKKKDERGKLDELVDQLELRH--VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL 170
|
170 180 190
....*....|....*....|....*....|....*..
gi 22331655 754 DPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCD 789
Cdd:cd03236 171 DIKQRLNAARLIRELAEDDnYVLVVEHDLAVLDYLSD 207
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
675-782 |
2.28e-08 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 56.63 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ETLTGKEHLLFYGRLKNLKGHDLNQAVEESLKSVNLFH---GGVADIPAGKYSGGMKRRLSVAISLI---GSPKVVYMDE 748
Cdd:pfam13304 186 QRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLILlenGGGGELPAFELSDGTKRLLALLAALLsalPKGGLLLIDE 265
|
90 100 110
....*....|....*....|....*....|....*
gi 22331655 749 PSTGLDPASRINLWTVIKR-AKKHAAIILTTHSME 782
Cdd:pfam13304 266 PESGLHPKLLRRLLELLKElSRNGAQLILTTHSPL 300
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
612-754 |
3.73e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 57.10 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 612 VPsGECFGMLGPNGAGKTSFINMMTGLVKPSSGS-AFVQGldickdmdkvyISMGVCPQHDLlwETLTGKEHLLFYgrLK 690
Cdd:PRK10636 336 VP-GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEiGLAKG-----------IKLGYFAQHQL--EFLRADESPLQH--LA 399
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22331655 691 NLKGHDLNQAVEESLKSVNlFHGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLD 754
Cdd:PRK10636 400 RLAPQELEQKLRDYLGGFG-FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
607-797 |
3.93e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 56.98 E-value: 3.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGV--CPQHDLLWETLTGKEHLL 684
Cdd:PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIylVPQEPLLFPNLSVKENIL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 685 FygRLKnlKGHDLNQAVEESLK----SVNLfhggvaDIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRIN 760
Cdd:PRK15439 109 F--GLP--KRQASMQKMKQLLAalgcQLDL------DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETER 178
|
170 180 190
....*....|....*....|....*....|....*....
gi 22331655 761 LWTVIK--RAKKHaAIILTTHSMEEAEFLCDRLGIFVDG 797
Cdd:PRK15439 179 LFSRIRelLAQGV-GIVFISHKLPEIRQLADRISVMRDG 216
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
605-799 |
5.10e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 56.55 E-value: 5.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 605 VCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDK-------VYISMGvcPQHDLLWETL 677
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQdglangiVYISED--RKRDGLVLGM 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 678 TGKEHL------LFYGRLKNLKGHDLNQAVEESLKSVNLfHGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPST 751
Cdd:PRK10762 346 SVKENMsltalrYFSRAGGSLKHADEQQAVSDFIRLFNI-KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 22331655 752 GLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK10762 425 GVDVGAKKEIYQLINQFKAEGlSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
587-757 |
6.60e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 56.10 E-value: 6.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYqgrdgnPPKLAVC-GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQ-GldickdmdkvyISM 664
Cdd:TIGR03719 8 NRVSKVV------PPKKEILkDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQpG-----------IKV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 665 GVCPQHDLLWETLTGKEHL------------------------------LF--YGRLKNL----KGHDLNQAVEESLKSV 708
Cdd:TIGR03719 71 GYLPQEPQLDPTKTVRENVeegvaeikdaldrfneisakyaepdadfdkLAaeQAELQEIidaaDAWDLDSQLEIAMDAL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 22331655 709 NLFHGgvaDIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPAS 757
Cdd:TIGR03719 151 RCPPW---DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
599-800 |
7.41e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 55.99 E-value: 7.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 599 NPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGlVKPS--SGSAFVQG--LDI--CKDMDKVYISM-------- 664
Cdd:TIGR02633 270 NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGkfEGNVFINGkpVDIrnPAQAIRAGIAMvpedrkrh 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 665 GVCPQ----HDLlweTLTGKEHLLFYGRLKNLKGHdlnQAVEESLK--SVNLFHggvADIPAGKYSGGMKRRLSVAISLI 738
Cdd:TIGR02633 349 GIVPIlgvgKNI---TLSVLKSFCFKMRIDAAAEL---QIIGSAIQrlKVKTAS---PFLPIGRLSGGNQQKAVLAKMLL 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22331655 739 GSPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQ 800
Cdd:TIGR02633 420 TNPRVLILDEPTRGVDVGAKYEIYKLINQlAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
608-799 |
8.12e-08 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 56.01 E-value: 8.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVkPSSGSAFVQGLDICKdmdkvyISMGVCPQHdLLWetlTGKEHLLFYG 687
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE------LDPESWRKH-LSW---VGQNPQLPHG 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 688 RLK--------NLKGHDLNQAVEESlkSVNLFhggVADIP----------AGKYSGGMKRRLSVAISLIGSPKVVYMDEP 749
Cdd:PRK11174 438 TLRdnvllgnpDASDEQLQQALENA--WVSEF---LPLLPqgldtpigdqAAGLSVGQAQRLALARALLQPCQLLLLDEP 512
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 22331655 750 STGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAEfLCDRLGIFVDGRL 799
Cdd:PRK11174 513 TASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQI 561
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
607-777 |
1.34e-07 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 55.50 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYI----SMGVCPQHDLLWETLTGKE 681
Cdd:PRK10535 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATlDADALAQlrreHFGFIFQRYHLLSHLTAAQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 682 HLLFYGRLKNLKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:PRK10535 106 NVEVPAVYAGLERKQRLLRAQELLQRLGL--EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEV 183
|
170
....*....|....*...
gi 22331655 762 WTVIK--RAKKHAAIILT 777
Cdd:PRK10535 184 MAILHqlRDRGHTVIIVT 201
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
604-803 |
1.53e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 55.01 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC----KDMDKVYIS-----MGVCPQHDLLW 674
Cdd:PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfngpKSSQEAGIGiihqeLNLIPQLTIAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ETLTGKEhllFYGRLKNLKGHDLNQAVEESLKSVNLFHGgvADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLD 754
Cdd:PRK10762 99 NIFLGRE---FVNRFGRIDWKKMYAEADKLLARLNLRFS--SDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALT 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 22331655 755 PASRINLWTVIKRAK-KHAAIILTTHSMEEAEFLCDRLGIFVDGrlQCIG 803
Cdd:PRK10762 174 DTETESLFRVIRELKsQGRGIVYISHRLKEIFEICDDVTVFRDG--QFIA 221
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
608-808 |
1.58e-07 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 54.79 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIC--KDMDKVYISMGVCPQH---DLLWETLTGKEH 682
Cdd:PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprSPLDAVKKGMAYITESrrdNGFFPNFSIAQN 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 683 LLFYGRLKN--LKG-------HDLNQAVEESLKSVNLFHGGVaDIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGL 753
Cdd:PRK09700 362 MAISRSLKDggYKGamglfheVDEQRTAENQRELLALKCHSV-NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGI 440
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 754 DPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL-QCIGNPKEL 808
Cdd:PRK09700 441 DVGAKAEIYKVMRQlADDGKVILMVSSELPEIITVCDRIAVFCEGRLtQILTNRDDM 497
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
587-754 |
2.82e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 54.35 E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRdgnppkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSaFVQGldickdmDKVYISMgV 666
Cdd:PRK11819 328 ENLSKSFGDR------LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT-IKIG-------ETVKLAY-V 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 667 CPQHDLL------WETLTGKEHLLFYGRLK----------NLKGHDLNQaveeslksvnlfhggvadiPAGKYSGGMKRR 730
Cdd:PRK11819 393 DQSRDALdpnktvWEEISGGLDIIKVGNREipsrayvgrfNFKGGDQQK-------------------KVGVLSGGERNR 453
|
170 180
....*....|....*....|....
gi 22331655 731 LSVAISLIGSPKVVYMDEPSTGLD 754
Cdd:PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
587-767 |
3.07e-07 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 53.17 E-value: 3.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRDGN-----PPKL--AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDK 659
Cdd:PRK15079 12 ADLKVHFDIKDGKqwfwqPPKTlkAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDD 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VY------ISM-------GVCPQH---DLLWETLTgkehlLFYgrlKNLKGHDLNQAVEESLKSVNLFHGGVADIPAgKY 723
Cdd:PRK15079 92 EWravrsdIQMifqdplaSLNPRMtigEIIAEPLR-----TYH---PKLSRQEVKDRVKAMMLKVGLLPNLINRYPH-EF 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 22331655 724 SGGMKRRLSVAISLIGSPKVVYMDEPSTGLD---PASRINLWTVIKR 767
Cdd:PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDvsiQAQVVNLLQQLQR 209
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
608-783 |
4.56e-07 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 51.64 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVY-ISMGVCPQHDLLW-ETLtgKEHLLF 685
Cdd:PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYrQQVSYCAQTPTLFgDTV--YDNLIF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 686 YGRLKNlkghdlnQAVEESLKSVNLFHGGVADI----PAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINL 761
Cdd:PRK10247 104 PWQIRN-------QQPDPAIFLDDLERFALPDTiltkNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
|
170 180
....*....|....*....|....
gi 22331655 762 WTVIKR--AKKHAAIILTTHSMEE 783
Cdd:PRK10247 177 NEIIHRyvREQNIAVLWVTHDKDE 200
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
607-796 |
4.63e-07 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 51.50 E-value: 4.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVK--PSSGSAFVQGLDIckdmdkvyismgvcpqhdllWETLTGKEHLL 684
Cdd:COG2401 48 DLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDVPDNQF--------------------GREASLIDAIG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 685 FYGrlknlkghDLNQAVEeSLKSVnlfhgGVADIPA-----GKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP--AS 757
Cdd:COG2401 108 RKG--------DFKDAVE-LLNAV-----GLSDAVLwlrrfKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRqtAK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 758 RI--NLWTVIKRAKKhaAIILTTHSMEEAEFLCDRLGIFVD 796
Cdd:COG2401 174 RVarNLQKLARRAGI--TLVVATHHYDVIDDLQPDLLIFVG 212
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
615-794 |
6.44e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 53.27 E-value: 6.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 615 GECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVqgldickdmdKVYISmgVCPQHdllwetLTGKEHLLFYGRLKNLKG 694
Cdd:PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP----------ELKIS--YKPQY------IKPDYDGTVEDLLRSITD 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 695 H-DLNQAVEESLKSVNLFHggVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR--AKKH 771
Cdd:PRK13409 427 DlGSSYYKSEIIKPLQLER--LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRiaEERE 504
|
170 180
....*....|....*....|...
gi 22331655 772 AAIILTTHSMEEAEFLCDRLGIF 794
Cdd:PRK13409 505 ATALVVDHDIYMIDYISDRLMVF 527
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
600-808 |
8.96e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 53.20 E-value: 8.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 600 PPKLAvcGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK----DMDKVyisMGVCPQhdllwe 675
Cdd:PLN03130 1252 PPVLH--GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKfglmDLRKV---LGIIPQ------ 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 676 tltgkEHLLFYGRLK-NL------KGHDLNQAVEES-LKSV---NLFhGGVADIPAG--KYSGGMKRRLSVAISLIGSPK 742
Cdd:PLN03130 1321 -----APVLFSGTVRfNLdpfnehNDADLWESLERAhLKDVirrNSL-GLDAEVSEAgeNFSVGQRQLLSLARALLRRSK 1394
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 743 VVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PLN03130 1395 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILVLDAGRVVEFDTPENL 1459
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
525-808 |
2.20e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 51.90 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 525 SSKDTFAFLKNPfkLSPTPQMLSfQKERSDVSVE-MEKLDVIQEKETVKQLIFERsknhGIVCDNLKKVYQGRDGNPPKL 603
Cdd:PLN03232 559 TSLSLFAVLRSP--LNMLPNLLS-QVVNANVSLQrIEELLLSEERILAQNPPLQP----GAPAISIKNGYFSWDSKTSKP 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVqgldickdmdkVYISMGVCPQHDLLWETlTGKEHL 683
Cdd:PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------IRGSVAYVPQVSWIFNA-TVRENI 699
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 LF--------YGR----------LKNLKGHDLNQAVEeslKSVNLfhggvadipagkySGGMKRRLSVAISLIGSPKVVY 745
Cdd:PLN03232 700 LFgsdfeserYWRaidvtalqhdLDLLPGRDLTEIGE---RGVNI-------------SGGQKQRVSMARAVYSNSDIYI 763
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22331655 746 MDEPSTGLDP-ASRINLWTVIKRAKKHAAIILTTHSMeeaEFL--CDRLGIFVDGRLQCIGNPKEL 808
Cdd:PLN03232 764 FDDPLSALDAhVAHQVFDSCMKDELKGKTRVLVTNQL---HFLplMDRIILVSEGMIKEEGTFAEL 826
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
601-808 |
2.34e-06 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 51.18 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 601 PKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDIcKDMD-KVYISMGVC-----PQHDLLW 674
Cdd:COG3845 270 GVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDI-TGLSpRERRRLGVAyipedRLGRGLV 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ETLTGKEHLLF--YGRLKNLKGH--DLNQAVEESLKSVNLFH--GGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDE 748
Cdd:COG3845 349 PDMSVAENLILgrYRRPPFSRGGflDRKAIRAFAEELIEEFDvrTPGPDTPARSLSGGNQQKVILARELSRDPKLLIAAQ 428
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22331655 749 PSTGLDPASRINLW-TVIKRAKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:COG3845 429 PTRGLDVGAIEFIHqRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEA 489
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
608-800 |
2.89e-06 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 49.85 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKpSSGSAFVQGLDICK-DMDKVYISMGVCPQHDLLWeTLTGKEHLLFY 686
Cdd:cd03289 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSvPLQKWRKAFGVIPQKVFIF-SGTFRKNLDPY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLKNlkgHDLNQAVEE-SLKSV----------NLFHGGVAdipagkYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP 755
Cdd:cd03289 101 GKWSD---EEIWKVAEEvGLKSVieqfpgqldfVLVDGGCV------LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 22331655 756 ASrinlWTVIKRAKKHA----AIILTTHSMeEAEFLCDRLGIFVDGRLQ 800
Cdd:cd03289 172 IT----YQVIRKTLKQAfadcTVILSEHRI-EAMLECQRFLVIEENKVR 215
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
587-754 |
4.86e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 49.58 E-value: 4.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 587 DNLKKVYQGRDG--NPPKL--AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDmDKVYi 662
Cdd:PRK11308 9 IDLKKHYPVKRGlfKPERLvkALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA-DPEA- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 663 smgvcpqhdllWETLTGKEHLLF---YGRLK-----------------NLKGHDLNQAVEESLKSVNLF--HggvadipA 720
Cdd:PRK11308 87 -----------QKLLRQKIQIVFqnpYGSLNprkkvgqileepllintSLSAAERREKALAMMAKVGLRpeH-------Y 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 22331655 721 GKY----SGGMKRRLSVAISLIGSPKVVYMDEPSTGLD 754
Cdd:PRK11308 149 DRYphmfSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
620-779 |
6.20e-06 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 50.23 E-value: 6.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 620 MLGPNGAGKTSFINMMTGlvKPSSGsaFVQGlDI-----CKDMDKVYISMGVCPQHDLLWETLTGKEHLLF--YGRL-KN 691
Cdd:PLN03140 911 LMGVSGAGKTTLMDVLAG--RKTGG--YIEG-DIrisgfPKKQETFARISGYCEQNDIHSPQVTVRESLIYsaFLRLpKE 985
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 692 LKGHDLNQAVEESLKSVNL--FHGGVADIPA-GKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDP-ASRINLWTVIKR 767
Cdd:PLN03140 986 VSKEEKMMFVDEVMELVELdnLKDAIVGLPGvTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDArAAAIVMRTVRNT 1065
|
170
....*....|..
gi 22331655 768 AKKHAAIILTTH 779
Cdd:PLN03140 1066 VDTGRTVVCTIH 1077
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
583-808 |
6.38e-06 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 49.46 E-value: 6.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 583 GIVCDNLKKVYQGrdGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSafvqgLDIC-------- 654
Cdd:PRK11650 3 GLKLQAVRKSYDG--KTQ---VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE-----IWIGgrvvnele 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 655 -KDMDkvyISMgVCpQHDLLWETLTGKEHLLfYGrLKN--LKGHDLNQAVEESLKSVNLfhGGVADIPAGKYSGGMKRRL 731
Cdd:PRK11650 73 pADRD---IAM-VF-QNYALYPHMSVRENMA-YG-LKIrgMPKAEIEERVAEAARILEL--EPLLDRKPRELSGGQRQRV 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22331655 732 SVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKK--HAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 808
Cdd:PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRrlKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
562-653 |
1.54e-05 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 48.48 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 562 LDVIQEKETVKQLIfERSKNHgIVCDNLKKVYQGRDgnppKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP 641
Cdd:PRK11176 322 LDLEQEKDEGKRVI-ERAKGD-IEFRNVTFTYPGKE----VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395
|
90
....*....|..
gi 22331655 642 SSGSAFVQGLDI 653
Cdd:PRK11176 396 DEGEILLDGHDL 407
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
610-798 |
2.53e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 47.80 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 610 LAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISMGVCPQH------------DLLWetl 677
Cdd:PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHqelnlvlqrsvmDNMW--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 678 TGK--------EHLLFYGRLKNLKgHDLNQAVEESLKSVNLfhggvadipagkySGGMKRRLSVAISLIGSPKVVYMDEP 749
Cdd:PRK10982 96 LGRyptkgmfvDQDKMYRDTKAIF-DELDIDIDPRAKVATL-------------SVSQMQMIEIAKAFSYNAKIVIMDEP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 22331655 750 STGLDPASRINLWTVIKRAKKHA-AIILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGcGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
608-780 |
3.76e-05 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 44.84 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSafvqgLDICKDMDKVYIsmgvcPQHDLLWE-TLtgKEhLLFY 686
Cdd:cd03223 20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR-----IGMPEGEDLLFL-----PQRPYLPLgTL--RE-QLIY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLKNLkghdlnqaveeslksvnlfhggvadipagkySGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK 766
Cdd:cd03223 87 PWDDVL-------------------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK 135
|
170
....*....|....
gi 22331655 767 raKKHAAIILTTHS 780
Cdd:cd03223 136 --ELGITVISVGHR 147
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
600-799 |
3.81e-05 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 47.32 E-value: 3.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 600 PPKLAVCGL---------SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldicKDMDK----------- 659
Cdd:COG1129 254 EVVLEVEGLsvggvvrdvSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDG----KPVRIrsprdairagi 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 660 VYIS-----MGVCPQHDLLWE-TLTgkeHLLFYGRLKNLKGHDLNQAVEESLKSVNLFHGGVaDIPAGKYSGGM--Krrl 731
Cdd:COG1129 330 AYVPedrkgEGLVLDLSIRENiTLA---SLDRLSRGGLLDRRRERALAEEYIKRLRIKTPSP-EQPVGNLSGGNqqK--- 402
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22331655 732 sVAIS--LIGSPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:COG1129 403 -VVLAkwLATDPKVLILDEPTRGIDVGAKAEIYRLIRElAAEGKAVIVISSELPELLGLSDRILVMREGRI 472
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
608-779 |
4.70e-05 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 47.11 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGEcfGML--GPNGAGKTSFINMMTGLVKPSSGSAfvqgldickdmdkvyismgVCPQHdllwetltgkEHLLF 685
Cdd:COG4178 382 LSLSLKPGE--RLLitGPSGSGKSTLLRAIAGLWPYGSGRI-------------------ARPAG----------ARVLF 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 686 -----Y---GRLK------NLKGHDLNQAVEESLKSVNLFHggvadiPAGKY----------SGGMKRRLSVAISLIGSP 741
Cdd:COG4178 431 lpqrpYlplGTLReallypATAEAFSDAELREALEAVGLGH------LAERLdeeadwdqvlSLGEQQRLAFARLLLHKP 504
|
170 180 190
....*....|....*....|....*....|....*...
gi 22331655 742 KVVYMDEPSTGLDPASRINLWTVIKRAKKHAAIILTTH 779
Cdd:COG4178 505 DWLFLDEATSALDEENEAALYQLLREELPGTTVISVGH 542
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
598-831 |
6.51e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 46.86 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 598 GNPPKLAvcGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGldickdmdkvyiSMGVCPQHdlLW-ET 676
Cdd:TIGR00957 649 DLPPTLN--GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYVPQQ--AWiQN 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 677 LTGKEHLLFygrlknlkGHDLNQAVEESLKSVNLFHGGVADIPAG----------KYSGGMKRRLSVAISLIGSPKVVYM 746
Cdd:TIGR00957 713 DSLRENILF--------GKALNEKYYQQVLEACALLPDLEILPSGdrteigekgvNLSGGQKQRVSLARAVYSNADIYLF 784
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 747 DEPSTGLDPASRINLWTVI---KRAKKHAAIILTTHSMeeaEFL--CDRLGIFVDGRLQCIGNPKELKGRYGG-SYVLTI 820
Cdd:TIGR00957 785 DDPLSAVDAHVGKHIFEHVigpEGVLKNKTRILVTHGI---SYLpqVDVIIVMSGGKISEMGSYQELLQRDGAfAEFLRT 861
|
250
....*....|.
gi 22331655 821 TTSPEHEKDVE 831
Cdd:TIGR00957 862 YAPDEQQGHLE 872
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
561-754 |
7.27e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.42 E-value: 7.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 561 KLDVIQEKEtVKQ-------LIFERSK---NHGIVCDNLKKVYqgrDGNPpklAVCGLSLAVPSGECFGMLGPNGAGKTS 630
Cdd:PRK15064 288 QIDKIKLEE-VKPssrqnpfIRFEQDKklhRNALEVENLTKGF---DNGP---LFKNLNLLLEAGERLAIIGENGVGKTT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 631 FINMMTGLVKPSSGSAfvqgldicKDMDKVYIsmGVCPQ---HDLLwETLTgkehlLFYGRLKNLKGHDLNQAVEESLKS 707
Cdd:PRK15064 361 LLRTLVGELEPDSGTV--------KWSENANI--GYYAQdhaYDFE-NDLT-----LFDWMSQWRQEGDDEQAVRGTLGR 424
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 22331655 708 VnLFHGGVADIPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLD 754
Cdd:PRK15064 425 L-LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
597-754 |
7.47e-05 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 46.49 E-value: 7.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 597 DGNPPklAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICK-DMDKVYISMGVCPQHDLLW- 674
Cdd:PRK13657 345 DNSRQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTvTRASLRRNIAVVFQDAGLFn 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ----ETL-TGKE---HLLFYGRLKNLKGHDLNQAVEESLKSVnlfhggvadipAG----KYSGGMKRRLSVAISLIGSPK 742
Cdd:PRK13657 423 rsieDNIrVGRPdatDEEMRAAAERAQAHDFIERKPDGYDTV-----------VGergrQLSGGERQRLAIARALLKDPP 491
|
170
....*....|..
gi 22331655 743 VVYMDEPSTGLD 754
Cdd:PRK13657 492 ILILDEATSALD 503
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
619-754 |
1.39e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 45.49 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 619 GMLGPNGAGKTSFINMMTGLVKPSSGSAFVQ-GldickdmdkvyISMGVCPQHDLLWETLTGKEHL-------------- 683
Cdd:PRK11819 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPApG-----------IKVGYLPQEPQLDPEKTVRENVeegvaevkaaldrf 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 684 -----LF-------------YGRLKN----LKGHDLNQAVEESLKSVNLFHGgvaDIPAGKYSGGMKRRlsVAIS--LIG 739
Cdd:PRK11819 106 neiyaAYaepdadfdalaaeQGELQEiidaADAWDLDSQLEIAMDALRCPPW---DAKVTKLSGGERRR--VALCrlLLE 180
|
170
....*....|....*
gi 22331655 740 SPKVVYMDEPSTGLD 754
Cdd:PRK11819 181 KPDMLLLDEPTNHLD 195
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
721-807 |
1.64e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 45.11 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 721 GKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK10982 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAElAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
....*...
gi 22331655 800 QCIGNPKE 807
Cdd:PRK10982 470 AGIVDTKT 477
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
642-816 |
1.65e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.79 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 642 SSGSAFVQGLDIC----KDMDKVYismGVCPQHDLLWeTLTGKEHLLFyGR----LKNLKGHDLNQAVEESLKSV-NLFH 712
Cdd:PTZ00265 1275 NSGKILLDGVDICdynlKDLRNLF---SIVSQEPMLF-NMSIYENIKF-GKedatREDVKRACKFAAIDEFIESLpNKYD 1349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 713 GGVAdiPAGK-YSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASR--INLWTVIKRAKKHAAIILTTH---SMEEAEF 786
Cdd:PTZ00265 1350 TNVG--PYGKsLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEklIEKTIVDIKDKADKTIITIAHriaSIKRSDK 1427
|
170 180 190
....*....|....*....|....*....|....*
gi 22331655 787 LC-----DRLGIFVdgrlQCIGNPKELKGRYGGSY 816
Cdd:PTZ00265 1428 IVvfnnpDRTGSFV----QAHGTHEELLSVQDGVY 1458
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
724-798 |
2.43e-04 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 44.85 E-value: 2.43e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22331655 724 SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKHAA--IILTTHSMEEAEFLCDRLGIFVDGR 798
Cdd:PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSmgVIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
622-780 |
4.21e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 42.55 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 622 GPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKdmdkvyismgvcpqhdllwetlTGKEHLLFYGRLKNLKghdLNQAV 701
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN----------------------IAKPYCTYIGHNLGLK---LEMTV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 702 EESLKSVNLFHGGVADIPAG---------------KYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVI- 765
Cdd:PRK13541 88 FENLKFWSEIYNSAETLYAAihyfklhdlldekcySLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIv 167
|
170
....*....|....*
gi 22331655 766 KRAKKHAAIILTTHS 780
Cdd:PRK13541 168 MKANSGGIVLLSSHL 182
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
724-781 |
4.41e-04 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 43.58 E-value: 4.41e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22331655 724 SGGMKRRLSVAISLIGSPKVVYMDEPSTGLD---PASRINLWTVIKRaKKHAAIILTTHSM 781
Cdd:PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDvtiQAQIIELLLELQQ-KENMALVLITHDL 214
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
601-758 |
5.11e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 43.81 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 601 PKLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKVYISmgvcpqhdlLWETLTGK 680
Cdd:PRK10522 335 NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK---------LFSAVFTD 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 681 EHLlfYGRLKNLKGHDLN-QAVEESLKSVNLFH------GGVADIpagKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGL 753
Cdd:PRK10522 406 FHL--FDQLLGPEGKPANpALVEKWLERLKMAHkleledGRISNL---KLSKGQKKRLALLLALAEERDILLLDEWAADQ 480
|
....*
gi 22331655 754 DPASR 758
Cdd:PRK10522 481 DPHFR 485
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
599-800 |
6.35e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 43.38 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 599 NPPKLAVCGLSLAVPSGECFGMLGPNGAGKTSfinMMTGL--VKP--SSGSAFVQG--LDI--CKDMDKVYISM------ 664
Cdd:PRK13549 272 NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTE---LVQCLfgAYPgrWEGEIFIDGkpVKIrnPQQAIAQGIAMvpedrk 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 665 --GVCPQHDLLWE-TLTGKEHLLFYGRL-KNLKGHDLNQAVEE-SLKSVNLFhggvadIPAGKYSGGMKRRLSVAISLIG 739
Cdd:PRK13549 349 rdGIVPVMGVGKNiTLAALDRFTGGSRIdDAAELKTILESIQRlKVKTASPE------LAIARLSGGNQQKAVLAKCLLL 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22331655 740 SPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQ 800
Cdd:PRK13549 423 NPKILILDEPTRGIDVGAKYEIYKLINQlVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
724-787 |
6.50e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 41.19 E-value: 6.50e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 724 SGGMKRRLSVAI-----SLIGSPKVVyMDEPSTGLDPASRINL-WTVIKRAKKHAAIILTTHSMEEAEFL 787
Cdd:cd03227 79 SGGEKELSALALilalaSLKPRPLYI-LDEIDRGLDPRDGQALaEAILEHLVKGAQVIVITHLPELAELA 147
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
608-757 |
7.62e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.48 E-value: 7.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMD-KVYIS-MGVCPQHDLLW----------- 674
Cdd:PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINlKWWRSkIGVVSQDPLLFsnsiknnikys 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 675 ----------------ETLTGKEHLLFYGRLKNLKGHDLN------------------QAVEES-LKSVN---LFHGGVA 716
Cdd:PTZ00265 484 lyslkdlealsnyyneDGNDSQENKNKRNSCRAKCAGDLNdmsnttdsneliemrknyQTIKDSeVVDVSkkvLIHDFVS 563
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 22331655 717 DIP----------AGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPAS 757
Cdd:PTZ00265 564 ALPdkyetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
605-653 |
1.08e-03 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 41.75 E-value: 1.08e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 22331655 605 VCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVkPSSGSAFVQGLDI 653
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPL 59
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
724-799 |
1.65e-03 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 41.22 E-value: 1.65e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 724 SGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKR-AKKHA-AIILTTHSMEEAEFLCDRLGIFVDGRL 799
Cdd:PRK10418 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESiVQKRAlGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
604-803 |
2.35e-03 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 41.76 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 604 AVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDI-----------CKDMDKV----YISMGvcP 668
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtlspgklqalRRDIQFIfqdpYASLD--P 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 669 QHDLLWETLtgkEHLLFYGRLKnlkGHDLNQAVEESLKSVNLFHGGVADIPAgKYSGGMKRRLSVAISLIGSPKVVYMDE 748
Cdd:PRK10261 417 RQTVGDSIM---EPLRVHGLLP---GKAAAARVAWLLERVGLLPEHAWRYPH-EFSGGQRQRICIARALALNPKVIIADE 489
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 749 PSTGLDPASR---INLWTVIKRaKKHAAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 803
Cdd:PRK10261 490 AVSALDVSIRgqiINLLLDLQR-DFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
608-650 |
2.38e-03 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 40.69 E-value: 2.38e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 22331655 608 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVkPSSGSAFVQG 650
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAG 56
|
|
| NosY |
COG1277 |
ABC-type transport system involved in multi-copper enzyme maturation, permease component ... |
363-453 |
2.76e-03 |
|
ABC-type transport system involved in multi-copper enzyme maturation, permease component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440888 [Multi-domain] Cd Length: 201 Bit Score: 40.18 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 363 FLAISTLYIVCLMI-FGSAIGLKFFRFNDYTIQFMFY-------FLYINLQISIAFLVSSAFSKAVTASVVAY-IYVFGS 433
Cdd:COG1277 100 FLGALLVLLLALLItFLLALLLGLLLFGSPPPDLGAIlgfylglLLLGLAFLAIGLFISALTRNQIVAAILAIaLWLLLV 179
|
90 100
....*....|....*....|
gi 22331655 434 GLLGAFLFQFLIESLSFPRR 453
Cdd:COG1277 180 ILLAWIVLFLALAYLRFKRR 199
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
690-788 |
2.86e-03 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 41.23 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 690 KNLKGHDLNQAVEESLKSVNLFHGGVADIPAgKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIK--R 767
Cdd:PRK15134 394 PTLSAAQREQQVIAVMEEVGLDPETRHRYPA-EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKslQ 472
|
90 100
....*....|....*....|.
gi 22331655 768 AKKHAAIILTTHSMEEAEFLC 788
Cdd:PRK15134 473 QKHQLAYLFISHDLHVVRALC 493
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
593-650 |
3.90e-03 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 40.94 E-value: 3.90e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 22331655 593 YQGRDGNPPkLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQG 650
Cdd:COG4615 337 YPGEDGDEG-FTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDG 393
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
622-782 |
9.52e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 39.22 E-value: 9.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 622 GPNGAGKTSFINMMTGLVKPSSGSAFVQG-LDICKDMDKVYISMGVC---PQHDLLWETLTGKEHLLFYGRLKNLKGH-- 695
Cdd:COG3593 30 GENNSGKSSILEALRLLLGPSSSRKFDEEdFYLGDDPDLPEIEIELTfgsLLSRLLRLLLKEEDKEELEEALEELNEElk 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 696 ----DLNQAVEESL----------------------KSVNLFHGGVADIPAGKYSGGMKRRLSVAISLI-------GSPK 742
Cdd:COG3593 110 ealkALNELLSEYLkelldgldlelelsldeledllKSLSLRIEDGKELPLDRLGSGFQRLILLALLSAlaelkraPANP 189
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 22331655 743 VVYMDEPSTGLDPASRINLWTVIKR-AKKHAAIILTTHSME 782
Cdd:COG3593 190 ILLIEEPEAHLHPQAQRRLLKLLKElSEKPNQVIITTHSPH 230
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
607-789 |
9.92e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 38.07 E-value: 9.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 607 GLSLAVPSGECFGMLGPNGAGKTSFINmmTGLVKpssgsafvQGLDICKDMDKVYismgvcpqhdllwetltGKEHLLFY 686
Cdd:cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYA--------SGKARLISFLPKF-----------------SRNKLIFI 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22331655 687 GRLKNLkghdlnqaVEESLKSVNLfhggvaDIPAGKYSGGMKRRLSVAISLIGSPK-VVY-MDEPSTGLDPASRINLWTV 764
Cdd:cd03238 66 DQLQFL--------IDVGLGYLTL------GQKLSTLSGGELQRVKLASELFSEPPgTLFiLDEPSTGLHQQDINQLLEV 131
|
170 180 190
....*....|....*....|....*....|
gi 22331655 765 IKR--AKKHaAIILTTHS---MEEAEFLCD 789
Cdd:cd03238 132 IKGliDLGN-TVILIEHNldvLSSADWIID 160
|
|
| |
