|
Name |
Accession |
Description |
Interval |
E-value |
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
614-835 |
2.41e-101 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 315.21 E-value: 2.41e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 614 KLRKVYpgrdGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVC 693
Cdd:cd03263 5 NLTKTY----KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 694 PQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMD 773
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD--KANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 774 EPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 835
Cdd:cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
610-838 |
3.36e-85 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 273.09 E-value: 3.36e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS 689
Cdd:COG1131 1 IEVRGLTKRYGD------KTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKV 769
Cdd:COG1131 75 IGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGL--TDAADRKVGTLSGGMKQRLGLALALLHDPEL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 770 VYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRY 838
Cdd:COG1131 153 LILDEPTSGLDPEARRELWELLRElAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
629-921 |
7.77e-76 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 250.38 E-value: 7.77e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREH 708
Cdd:TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 709 LLFYGRLKNLKGVDLNQAVEESLRSVNLFHGgvADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLW 788
Cdd:TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEA--ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 789 TVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYV-LTMTTSSEHEKDVEMLVQEVSPN 866
Cdd:TIGR01188 165 DYIRALKEEgVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLeSRPRDIQSLKVEVSMLIAELGET 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 867 ---VKKIYHIAGTQKFEIPKDEVRISEVFQVVekAKSNFKVFAWGLADTTLEDVFIKV 921
Cdd:TIGR01188 245 glgLLAVTVDSDRIKILVPDGDETVPEIVEAA--IRNGIRIRSISTERPSLDDVFLKL 300
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
610-835 |
9.50e-74 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 241.51 E-value: 9.50e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYpgrDGNppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS 689
Cdd:cd03265 1 IEVENLVKKY---GDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKV 769
Cdd:cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGL--LEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 770 VYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 835
Cdd:cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEklKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
586-923 |
1.30e-63 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 235.29 E-value: 1.30e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 586 EKLDVIHESEKVaqlMLESSTSHAIVCDKLRKVYPGRDgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLV 665
Cdd:TIGR01257 1917 EDDDVAEERQRI---ISGGNKTDILRLNELTKVYSGTS----SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT 1989
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 666 KPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKP 745
Cdd:TIGR01257 1990 TVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL--SLYADRL 2067
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 746 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:TIGR01257 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREgRAVVLTSHSMEECEALCTRLAIMVKGA 2147
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 825 LQCIGNPKELKGRYGGSYVLTMTTSSEHE------KDVEMLVQEVSP-NVKKIYHIAGTQkFEIPKDEvrISEVFQVVEK 897
Cdd:TIGR01257 2148 FQCLGTIQHLKSKFGDGYIVTMKIKSPKDdllpdlNPVEQFFQGNFPgSVQRERHYNMLQ-FQVSSSS--LARIFQLLIS 2224
|
330 340
....*....|....*....|....*.
gi 334185806 898 AKSNFKVFAWGLADTTLEDVFIKVAR 923
Cdd:TIGR01257 2225 HKDSLLIEEYSVTQTTLDQVFVNFAK 2250
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
610-825 |
1.74e-60 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 203.40 E-value: 1.74e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS 689
Cdd:cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 MGVCPQHDLLWETLTGREHLlfygrlknlkgvdlnqaveeslrsvnlfhggvadkpagKYSGGMKRRLSVAISLIGNPKV 769
Cdd:cd03230 75 IGYLPEEPSLYENLTVRENL--------------------------------------KLSGGMKQRLALAQALLHDPEL 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 770 VYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:cd03230 117 LILDEPTSGLDPESRREFWELLRElKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
303-932 |
1.02e-55 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 211.03 E-value: 1.02e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 303 WVSNAYLQYL--QG-PRTKMLFE-----FVKEMPKPetkLRLDIASLI-----GPIFFTWVILLLLPVILNSLVYEKQQR 369
Cdd:TIGR01257 605 WGGFAYLQDMveQGiTRSQMQAEppvgiYLQQMPYP---CFVDDSFMIilnrcFPIFMVLAWIYSVSMTVKSIVLEKELR 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 370 LRIIMKMHGLGDGPYWIISYAYFLALSTFYIIFLMIFgsVIGLKFFLLNDFSLQFSFYFVYINLQISIAFLLSSAFSKve 449
Cdd:TIGR01257 682 LKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIF--IMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSK-- 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 450 tASVAAYLyvfgSGLLgmFLFQFLLEGLSFPRRWIFVMELYPGFSL-----------YRGLYEFSQNAYQGNLNGKDGMK 518
Cdd:TIGR01257 758 -ASLAAAC----SGVI--YFTLYLPHILCFAWQDRMTADLKTAVSLlspvafgfgteYLVRFEEQGLGLQWSNIGNSPLE 830
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 519 WKYFS----------DNAI--------DEVF---YIIIVEWFVALIATYYIDKMSSSGKDllfflknqnpfkiSHSLQKq 577
Cdd:TIGR01257 831 GDEFSfllsmkmmllDAALygllawylDQVFpgdYGTPLPWYFLLQESYWLGGEGCSTRE-------------ERALEK- 896
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 578 VSAISVEMEklDVIHeSEKVAQLMLESSTSHAI--VCDK-LRKVYPGRdGNPpkkAVRVLSLAVPSGECFGMLGPNGAGK 654
Cdd:TIGR01257 897 TEPLTEEME--DPEH-PEGINDSFFERELPGLVpgVCVKnLVKIFEPS-GRP---AVDRLNITFYENQITAFLGHNGAGK 969
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 655 TSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSV 734
Cdd:TIGR01257 970 TTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT 1049
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 735 NLFHGgvADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLC 814
Cdd:TIGR01257 1050 GLHHK--RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLG 1127
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 815 DRLGIFVDGRLQCIGNPKELKGRYGGSYVLTM--------------------------TTSSEHEKDV---EML---VQE 862
Cdd:TIGR01257 1128 DRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLvrkmkniqsqrggcegtcsctskgfsTRCPARVDEItpeQVLdgdVNE 1207
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 863 VS-------PNVKKIYHIAGTQKFEIPKDEVR---ISEVFQVVEKAKSNFKVFAWGLADTTLEDVFIKVARTAQAFNVFS 932
Cdd:TIGR01257 1208 LMdlvyhhvPEAKLVECIGQELIFLLPNKNFKqraYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSGSLFA 1287
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
628-841 |
1.51e-55 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 192.38 E-value: 1.51e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGRE 707
Cdd:COG4555 14 VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLPDERGLYDRLTVRE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 HLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNL 787
Cdd:COG4555 94 NIRYFAELYGLFDEELKKRIEELIELLGL--EEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVMARRLL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 788 WTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGS 841
Cdd:COG4555 172 REILRALKKEgKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEE 226
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
610-826 |
4.60e-50 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 175.84 E-value: 4.60e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGeCFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS 689
Cdd:cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKV 769
Cdd:cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL--GDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 770 VYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQ 826
Cdd:cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
610-825 |
1.37e-49 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 174.48 E-value: 1.37e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYpgRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS 689
Cdd:cd03266 2 ITADALTKRF--RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKV 769
Cdd:cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE--LLDRRVGGFSTGMRQKVAIARALVHDPPV 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 770 VYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALgKCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
604-921 |
3.89e-46 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 168.86 E-value: 3.89e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 604 SSTSHAIVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDM 683
Cdd:PRK13536 36 SMSTVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 684 DRVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISL 763
Cdd:PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL--ESKADARVSDLSGGMKRRLTLARAL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSY 842
Cdd:PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSlLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQ 267
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 843 VLTMTTSSEHEkdvemLVQEVSPNVKKIyHIAGTQKFEIPKDevriSEVFQVVEKAKSNFKVFawgLADTTLEDVFIKV 921
Cdd:PRK13536 268 VIEIYGGDPHE-----LSSLVKPYARRI-EVSGETLFCYAPD----PEQVRVQLRGRAGLRLL---QRPPNLEDVFLRL 333
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
609-834 |
1.20e-45 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 166.52 E-value: 1.20e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYpgrdGNppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYT 688
Cdd:PRK13537 7 PIDFRNVEKRY----GD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHGgvADKPAGKYSGGMKRRLSVAISLIGNPK 768
Cdd:PRK13537 81 RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK--ADAKVGELSGGMKRRLTLARALVNDPD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSlLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
613-927 |
2.28e-45 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 165.28 E-value: 2.28e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 613 DKLRKVYpgrdGNppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC-KDMDRV----- 686
Cdd:COG4152 5 KGLTKRF----GD--KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDpEDRRRIgylpe 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 687 ----YTSMGVcpqhdllwetltgREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAIS 762
Cdd:COG4152 79 erglYPKMKV-------------GEQLVYLARLKGLSKAEAKRRADEWLERLGL--GDRANKKVEELSKGNQQKVQLIAA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 763 LIGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGS 841
Cdd:COG4152 144 LLHDPELLILDEPFSGLDPVNVELLKDVIRElAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRN 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 842 YVLTmttssEHEKDVEMLVQEvsPNVKKIYHIAGTQKFEIPkDEVRISEVFQvveKAKSNFKVFAWGLADTTLEDVFIKV 921
Cdd:COG4152 224 TLRL-----EADGDAGWLRAL--PGVTVVEEDGDGAELKLE-DGADAQELLR---ALLARGPVREFEEVRPSLNEIFIEV 292
|
....*.
gi 334185806 922 ARTAQA 927
Cdd:COG4152 293 VGEKAE 298
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
634-805 |
5.05e-43 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 155.33 E-value: 5.05e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREHLLFYG 713
Cdd:COG4133 21 LSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLGHADGLKPELTVRENLRFWA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 714 RLKNLKGVDlnQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN 793
Cdd:COG4133 101 ALYGLRADR--EAIDEALEAVGL--AGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAA 176
|
170
....*....|...
gi 334185806 794 -AKRHTAIILTTH 805
Cdd:COG4133 177 hLARGGAVLLTTH 189
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
628-825 |
3.01e-42 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 153.14 E-value: 3.01e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDrVYTSMGVCPQHDLLWETLTGRE 707
Cdd:cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE-ALRRIGALIEAPGFYPNLTARE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 HLLFYGRLKNLKgvdlNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNL 787
Cdd:cd03268 92 NLRLLARLLGIR----KKRIDEVLDVVGL--KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165
|
170 180 190
....*....|....*....|....*....|....*....
gi 334185806 788 WTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:cd03268 166 RELILSlRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
610-834 |
1.40e-41 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 152.10 E-value: 1.40e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC-KDMDRVYT 688
Cdd:COG1122 1 IELENLSFSYPGG-----TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITkKNLRELRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGVCPQHDllwetltgrEHLLF---------YGrLKNLkGVD---LNQAVEESLRSVNLFHggVADKPAGKYSGGMKRR 756
Cdd:COG1122 76 KVGLVFQNP---------DDQLFaptveedvaFG-PENL-GLPreeIRERVEEALELVGLEH--LADRPPHELSGGQKQR 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 757 LSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG1122 143 VAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
627-824 |
4.46e-40 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 147.04 E-value: 4.46e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 627 PKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMD-RVYTSMGVCPQHDLLWETLTG 705
Cdd:cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG----KPLDiAARNRIGYLPEERGLYPKMKV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 REHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRK 785
Cdd:cd03269 88 IDQLVYLAQLKGLKKEEARRRIDEWLERLEL--SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 334185806 786 NLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:cd03269 166 LLKDVIRELARAgKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
634-835 |
6.94e-37 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 138.96 E-value: 6.94e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDRVYTSMGVCPQHDLLWETLTGREHL 709
Cdd:COG1127 24 VSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITglseKELYELRRRIGMLFQGGALFDSLTVFENV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFYGR-LKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLW 788
Cdd:COG1127 104 AFPLReHTDLSEAEIRELVLEKLELVGL--PGAADKMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVID 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 334185806 789 TVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 835
Cdd:COG1127 182 ELIRelRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELL 230
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
611-824 |
1.08e-36 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 137.60 E-value: 1.08e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 611 VCDKLRKVYPGRDgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTS 689
Cdd:cd03225 1 ELKNLSFSYPDGA----RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKlSLKELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 MGVC---PQHDLLweTLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGN 766
Cdd:cd03225 77 VGLVfqnPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL--EGLRDRSPFTLSGGQKQRVAIAGVLAMD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKlKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
615-825 |
4.03e-36 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 136.37 E-value: 4.03e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRDgnppkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRvytSMGVCP 694
Cdd:TIGR03740 6 LSKRFGKQT------AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH---KIGSLI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 695 QHDLLWETLTGREHLLFYGRLKNLKgvdlNQAVEESLRSVNLFHGGvaDKPAGKYSGGMKRRLSVAISLIGNPKVVYMDE 774
Cdd:TIGR03740 77 ESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTG--KKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 775 PSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:TIGR03740 151 PTNGLDPIGIQELRELIRSfPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
615-824 |
1.72e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 131.98 E-value: 1.72e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS-MGVC 693
Cdd:cd00267 5 LSFRYGGR------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRrIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 694 PQhdllwetltgrehllfygrlknlkgvdlnqaveeslrsvnlfhggvadkpagkYSGGMKRRLSVAISLIGNPKVVYMD 773
Cdd:cd00267 79 PQ-----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 774 EPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:cd00267 106 EPTSGLDPASRERLLELLRElAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
605-841 |
3.17e-35 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 134.45 E-value: 3.17e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 605 STSHAIVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMD 684
Cdd:COG1121 2 MMMPAIELENLTVSYGGR------PVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 685 RV-YtsmgVcPQH-DLLWET-LTGREHLL--FYGRLKNLKGV--DLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRL 757
Cdd:COG1121 76 RIgY----V-PQRaEVDWDFpITVRDVVLmgRYGRRGLFRRPsrADREAVDEALERVGL--EDLADRPIGELSGGQQQRV 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 758 SVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLgIFVDGRLQCIGNPKE--- 833
Cdd:COG1121 149 LLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREgKTILVVTHDLGAVREYFDRV-LLLNRGLVAHGPPEEvlt 227
|
250
....*....|.
gi 334185806 834 ---LKGRYGGS 841
Cdd:COG1121 228 penLSRAYGGP 238
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
610-834 |
5.81e-35 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 133.05 E-value: 5.81e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKD-MD-RVY 687
Cdd:cd03218 1 LRAENLSKRYGKR------KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLpMHkRAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 688 TSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNP 767
Cdd:cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH--LRKSKASSLSGGERRRVEIARALATNP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 768 KVVYMDEPSTGLDPASRKNLWTVIKNAK-RHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKdRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
634-835 |
7.20e-35 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 133.01 E-value: 7.20e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDRVYTSMGVCPQHDLLWETLTGREHL 709
Cdd:cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISglseAELYRLRRRMGMLFQSGALFDSLTVFENV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFYGRLK-NLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLW 788
Cdd:cd03261 99 AFPLREHtRLSEEEIREIVLEKLEAVGL--RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 334185806 789 TVIKNAKRH--TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 835
Cdd:cd03261 177 DLIRSLKKElgLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
610-820 |
9.12e-35 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 132.21 E-value: 9.12e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRDGnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDRVYTS 689
Cdd:cd03293 1 LEVRNVSKTYGGGGG--AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKV 769
Cdd:cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL--SGFENAYPHQLSGGMRQRVALARALAVDPDV 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 334185806 770 VYMDEPSTGLDPASRKNLWTVIKNAKRHT--AIILTTHSMEEAEFLCDRLGIF 820
Cdd:cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETgkTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
615-829 |
1.30e-34 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 131.49 E-value: 1.30e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDRVYTSMGVCP 694
Cdd:cd03259 6 LSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV-TGVPPERRNIGMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 695 QHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDE 774
Cdd:cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG--LLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 775 PSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 829
Cdd:cd03259 157 PLSALDAKLREELREELKElqRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
610-825 |
3.51e-34 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 130.30 E-value: 3.51e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGrdGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI--CKDMDRVY 687
Cdd:cd03255 1 IELKNLSKTYGG--GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIskLSEKELAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 688 ---TSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLI 764
Cdd:cd03255 79 frrRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL--GDRLNHYPSELSGGQQQRVAIARALA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 765 GNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFlCDRLGIFVDGRL 825
Cdd:cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRelNKEAGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
629-833 |
3.64e-34 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 131.02 E-value: 3.64e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCP--QHDLLWETLT-- 704
Cdd:cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRtfQIPRLFPELTvl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 705 ----------GREHLLFYGRLKNLKgvDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDE 774
Cdd:cd03219 94 envmvaaqarTGSGLLLARARREER--EARERAEELLERVGL--ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 775 PSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:cd03219 170 PAAGLNPEETEELAELIRElRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
604-821 |
3.72e-34 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 131.75 E-value: 3.72e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 604 SSTSHAIVCDKLRKVYPGRDGnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDM 683
Cdd:COG1116 2 SAAAPALELRGVSKRFPTGGG--GVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 684 DRVytsmGVCPQHDLL--WetLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKpagkY----SGGMKRRL 757
Cdd:COG1116 80 PDR----GVVFQEPALlpW--LTVLDNVALGLELRGVPKAERRERARELLELVGL--AGFEDA----YphqlSGGMRQRV 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 758 SVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRlgIFV 821
Cdd:COG1116 148 AIARALANDPEVLLMDEPFGALDALTRERLQDELLRlwQETGKTVLFVTHDVDEAVFLADR--VVV 211
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
628-826 |
9.22e-34 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 129.76 E-value: 9.22e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMG-VCPQHDLLWETLTGR 706
Cdd:cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGvVFGQKTQLWWDLPVI 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 707 EHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKN 786
Cdd:cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDL--EELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 334185806 787 LWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQ 826
Cdd:cd03267 192 IRNFLKeyNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
610-834 |
2.85e-33 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 128.55 E-value: 2.85e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMD-RVY 687
Cdd:TIGR04406 2 LVAENLIKSYKKR------KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHlPMHeRAR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 688 TSMGVCPQHDLLWETLTGREHLL-FYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGN 766
Cdd:TIGR04406 76 LGIGYLPQEASIFRKLTVEENIMaVLEIRKDLDRAEREERLEALLEEFQISH--LRDNKAMSLSGGERRRVEIARALATN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIKNAK-RHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:TIGR04406 154 PKFILLDEPFAGVDPIAVGDIKKIIKHLKeRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEI 222
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
609-895 |
7.84e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 129.82 E-value: 7.84e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYPGRDGNPP---------------KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAF 673
Cdd:COG4586 1 IIEVENLSKTYRVYEKEPGlkgalkglfrreyreVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 674 VQGLDICKDMDR-------VytsMGvcpQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEEsLrsVNLFH-GGVADKP 745
Cdd:COG4586 81 VLGYVPFKRRKEfarrigvV---FG---QRSQLWWDLPAIDSFRLLKAIYRIPDAEYKKRLDE-L--VELLDlGELLDTP 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 746 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLgIFVD- 822
Cdd:COG4586 152 VRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKeyNRERGTTILLTSHDMDDIEALCDRV-IVIDh 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 823 GRLQCIGNPKELKGRYGGSYVLTMTTSSEHEKDvemlvqEVSPNVKKIYHIAGTQKFEIPKDEvRISEVFQVV 895
Cdd:COG4586 231 GRIIYDGSLEELKERFGPYKTIVLELAEPVPPL------ELPRGGEVIEREGNRVRLEVDPRE-SLAEVLARL 296
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
629-833 |
9.12e-33 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 127.85 E-value: 9.12e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI-CKDMDRVyTSMGVCP--QHDLLWETLTG 705
Cdd:COG0411 18 VAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDItGLPPHRI-ARLGIARtfQNPRLFPELTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 REHLL----------FYGRLKNLKGV-----DLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVV 770
Cdd:COG0411 97 LENVLvaaharlgrgLLAALLRLPRArreerEARERAEELLERVGL--ADRADEPAGNLSYGQQRRLEIARALATEPKLL 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 771 YMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:COG0411 175 LLDEPAAGLNPEETEELAELIRrlRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAE 239
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
628-816 |
1.51e-32 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 125.72 E-value: 1.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVytsmGVCPQH-DLLWE----- 701
Cdd:cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI----GYVPQRrSIDRDfpisv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 702 ---TLTGREHllFYGRLKNLKGVDlNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 778
Cdd:cd03235 88 rdvVLMGLYG--HKGLFRRLSKAD-KAKVDEALERVGLSE--LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162
|
170 180 190
....*....|....*....|....*....|....*....
gi 334185806 779 LDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDR 816
Cdd:cd03235 163 VDPKTQEDIYELLRELRREgMTILVVTHDLGLVLEYFDR 201
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
634-777 |
6.35e-32 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 121.60 E-value: 6.35e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVY-TSMGVCPQHDLLWETLTGREHLLFY 712
Cdd:pfam00005 4 VSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLrKEIGYVFQDPQLFPRLTVRENLRLG 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 713 GRLKNLKGVDLNQAVEESLRSVNLFHGG--VADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 777
Cdd:pfam00005 84 LLLKGLSKREKDARAEEALEKLGLGDLAdrPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
628-834 |
6.44e-32 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 124.27 E-value: 6.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDRVYT---SMGVCPQHDLLWETLT 704
Cdd:cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG----KDITNLPPhkrPVNTVFQNYALFPHLT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 705 GREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:cd03300 89 VFENIAFGLRLKKLPKAEIKERVAEALDLVQL--EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 785 KNLWTVIKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:cd03300 167 KDMQLELKRLQKELGItfVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
615-825 |
1.81e-31 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 123.00 E-value: 1.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRDGnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK---DMDRVY-TSM 690
Cdd:cd03257 7 LSVSFPTGGG--SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKlsrRLRKIRrKEI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 691 GVCPQH------------DLLWETltgrehLLFYGRLKNLKgvDLNQAVEESLRSVNLfHGGVADKPAGKYSGGMKRRLS 758
Cdd:cd03257 85 QMVFQDpmsslnprmtigEQIAEP------LRIHGKLSKKE--ARKEAVLLLLVGVGL-PEEVLNRYPHELSGGQRQRVA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 759 VAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAK--RHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQeeLGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
617-834 |
3.44e-31 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 122.79 E-value: 3.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 617 KVYPGRdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQ 695
Cdd:cd03295 8 KRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREqDPVELRRKIGYVIQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 696 HDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 775
Cdd:cd03295 83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 776 STGLDPASRKNLWTVIKNAKR--HTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:cd03295 163 FGALDPITRDQLQEEFKRLQQelGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
628-834 |
4.54e-31 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 123.33 E-value: 4.54e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDRVYTSMGVC---PQHDLLW 700
Cdd:TIGR04521 18 KKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITakkkKKLKDLRKKVGLVfqfPEHQLFE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 701 ETLtgrEHLLFYGrLKNLkGVDLNQA---VEESLRSVNLfHGGVADKPAGKYSGGMKRRlsVAIS--LIGNPKVVYMDEP 775
Cdd:TIGR04521 98 ETV---YKDIAFG-PKNL-GLSEEEAeerVKEALELVGL-DEEYLERSPFELSGGQMRR--VAIAgvLAMEPEVLILDEP 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 776 STGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:TIGR04521 170 TAGLDPKGRKEILDLFKrlHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREV 230
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
609-834 |
8.61e-31 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 121.69 E-value: 8.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDR--V 686
Cdd:COG1120 1 MLEAENLSVGYGGR------PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDL-ASLSRreL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 687 YTSMGVCPQHDLLWETLTGREhLLFYGR------LKNLKGVDLnQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVA 760
Cdd:COG1120 74 ARRIAYVPQEPPAPFGLTVRE-LVALGRyphlglFGRPSAEDR-EAVEEALERTGLEH--LADRPVDELSGGERQRVLIA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 761 ISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG1120 150 RALAQEPPLLLLDEPTSHLDLAHQLEVLELLRrlARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV 225
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
606-834 |
1.18e-30 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 124.44 E-value: 1.18e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 606 TSHAIVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDR 685
Cdd:COG3842 2 AMPALELENVSKRYGD------VTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDG----RDVTG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 VYTS---MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRlsVAI- 761
Cdd:COG3842 72 LPPEkrnVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGL--EGLADRYPHQLSGGQQQR--VALa 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 762 -SLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG3842 148 rALAPEPRVLLLDEPLSALDAKLREEMREELRRlqRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
609-825 |
1.26e-30 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 120.53 E-value: 1.26e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYPgrDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYT 688
Cdd:COG1136 4 LLELRNLTKSYG--TGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 -----SMGVCPQ-HDLLwETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAIS 762
Cdd:COG1136 82 rlrrrHIGFVFQfFNLL-PELTALENVALPLLLAGVSRKERRERARELLERVGL--GDRLDHRPSQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 763 LIGNPKVVYMDEPsTG-LDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFlCDRLGIFVDGRL 825
Cdd:COG1136 159 LVNRPKLILADEP-TGnLDSKTGEEVLELLRelNRELGTTIVMVTHDPELAAR-ADRVIRLRDGRI 222
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
627-834 |
1.33e-30 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 120.36 E-value: 1.33e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 627 PKKAVRVLSLAVPSGECFGMLGPNGAGKTSF---INMMTGLVK--PTSGAAFVQGLDICKDMDRVY---TSMGVCPQH-D 697
Cdd:cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLlrlLNRLNDLIPgaPDEGEVLLDGKDIYDLDVDVLelrRRVGMVFQKpN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 LLWETLtgREHLLfYGrLKnLKGVDLNQA----VEESLRSVNLFhGGVADKPAGKY-SGGMKRRLSVAISLIGNPKVVYM 772
Cdd:cd03260 92 PFPGSI--YDNVA-YG-LR-LHGIKLKEElderVEEALRKAALW-DEVKDRLHALGlSGGQQQRLCLARALANEPEVLLL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 773 DEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:cd03260 166 DEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
628-824 |
2.87e-30 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 117.67 E-value: 2.87e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVY---TSMGVCPQHDLLWETLT 704
Cdd:cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPplrRRIGMVFQDFALFPHLT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 705 GREHLLFygRLknlkgvdlnqaveeslrsvnlfhggvadkpagkySGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:cd03229 93 VLENIAL--GL----------------------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITR 136
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 334185806 785 KNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:cd03229 137 REVRALLKslQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
608-834 |
4.20e-30 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 119.36 E-value: 4.20e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 608 HAIVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGK-TSFiNMMTGLVKPTSGAAFVQGLDICKD-MD- 684
Cdd:COG1137 2 MTLEAENLVKSYGKR------TVVKDVSLEVNQGEIVGLLGPNGAGKtTTF-YMIVGLVKPDSGRIFLDGEDITHLpMHk 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 685 RVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLI 764
Cdd:COG1137 75 RARLGIGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITH--LRKSKAYSLSGGERRRVEIARALA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 765 GNPKVVYMDEPSTGLDPASRKNLWTVIKNAK-RHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG1137 153 TNPKFILLDEPFAGVDPIAVADIQKIIRHLKeRGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
630-834 |
5.55e-30 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 120.06 E-value: 5.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC------------KDMDRVYTSMGVCPQHD 697
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAamsrkelrelrrKKISMVFQSFALLPHRT 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 LLWETLTGREhllfygrlknLKGVDLN---QAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDE 774
Cdd:cd03294 119 VLENVAFGLE----------VQGVPRAereERAAEALELVGL--EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 775 PSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:cd03294 187 AFSALDPLIRREMQDELLRlqAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
613-825 |
1.32e-29 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 117.68 E-value: 1.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 613 DKLRKVYPGRDGNPPkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDRVYT 688
Cdd:cd03258 5 KNVSKVFGDTGGKVT--ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgKELRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhggvADKpAGKY----SGGMKRRLSVAISLI 764
Cdd:cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----EDK-ADAYpaqlSGGQKQRVGIARALA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 765 GNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRdiNRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
634-825 |
5.65e-29 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 115.30 E-value: 5.65e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI-CKDMDRVYTSMGVCPQHDLLWETlTGREHLLFY 712
Cdd:COG4619 19 VSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLsAMPPPEWRRQVAYVPQEPALWGG-TVRDNLPFP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 713 GRLKNLKGVDlnQAVEESLRSVNLfHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK 792
Cdd:COG4619 98 FQLRERKFDR--ERALELLERLGL-PPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLR 174
|
170 180 190
....*....|....*....|....*....|....*
gi 334185806 793 N--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:COG4619 175 EylAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
610-834 |
6.76e-29 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 121.93 E-value: 6.76e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDR 685
Cdd:COG1123 261 LEVRNLSKRYPVR-GKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTklsrRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 VYTSMGVCPQH------------DLLWETLTgrehllfygRLKNLKGVDLNQAVEESLRSVNLfHGGVADKPAGKYSGGM 753
Cdd:COG1123 340 LRRRVQMVFQDpysslnprmtvgDIIAEPLR---------LHGLLSRAERRERVAELLERVGL-PPDLADRYPHELSGGQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 754 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNP 831
Cdd:COG1123 410 RQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRdlQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPT 489
|
...
gi 334185806 832 KEL 834
Cdd:COG1123 490 EEV 492
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
629-864 |
7.30e-29 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 119.07 E-value: 7.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFInMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVC-PQHDLLWETLTGRE 707
Cdd:NF000106 27 KAVDGVDLDVREGTVLGVLGP*GAA**RGA-LPAHV*GPDAGRRPWRF*TWCANRRALRRTIG*HrPVR*GRRESFSGRE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 HLLFYGRLKNLKGVDLNQAVEESLRSVNLFHGgvADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNL 787
Cdd:NF000106 106 NLYMIGR*LDLSRKDARARADELLERFSLTEA--AGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEV 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 788 WTVIKNAKRHTA-IILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSyvlTMTTSSEHEKDVEMLVQEVS 864
Cdd:NF000106 184 WDEVRSMVRDGAtVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVGGR---TLQIRPAHAAELDRMVGAIA 258
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
628-833 |
7.67e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 117.07 E-value: 7.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK---DMDRVYTSMGVC---PQHDLLWE 701
Cdd:PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDkkvKLSDIRKKVGLVfqyPEYQLFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 702 TLtgREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 781
Cdd:PRK13637 100 TI--EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 334185806 782 ASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:PRK13637 178 KGRDEILNKIKElhKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
631-833 |
1.38e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 115.13 E-value: 1.38e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 631 VRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDRVYTSMGVCPQHDLLWETLTGREHLL 710
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQNYALFPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 711 FYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTV 790
Cdd:cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDH--LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 334185806 791 IKNAKRH--TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:cd03299 172 LKKIRKEfgVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
609-835 |
2.56e-28 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 114.52 E-value: 2.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYPGRDGNPPkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRV-Y 687
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVP--VLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAfR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 688 TSMGVCPQHDL--------LWETLtgREHLLFYGRLknlkgvDLNQAVEESLRSVNLfHGGVADKPAGKYSGGMKRRLSV 759
Cdd:COG1124 79 RRVQMVFQDPYaslhprhtVDRIL--AEPLRIHGLP------DREERIAELLEQVGL-PPSFLDRYPHQLSGGQRQRVAI 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 760 AISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 835
Cdd:COG1124 150 ARALILEPELLLLDEPTSALDVSVQAEILNLLKdlREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLL 227
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
609-879 |
8.89e-28 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 118.85 E-value: 8.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYPGRDgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPT---SGAAFVQGLDICKDMDR 685
Cdd:COG1123 4 LLEVRDLSVRYPGGD----VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 VY-TSMGVCPQH-DLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISL 763
Cdd:COG1123 80 LRgRRIGMVFQDpMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLER--RLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGG- 840
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRelQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQAl 237
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 334185806 841 ----SYVLTMTTSSEHEKDVEMLVqEVSpNVKKIYHIAGTQKF 879
Cdd:COG1123 238 aavpRLGAARGRAAPAAAAAEPLL-EVR-NLSKRYPVRGKGGV 278
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
615-825 |
1.96e-27 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 110.33 E-value: 1.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP--TSGAAFVQGLDIckDMDRVYTSMGV 692
Cdd:cd03213 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlgVSGEVLINGRPL--DKRSFRKIIGY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 693 CPQHDLLWETLTGREHLLFYGRLKNLkgvdlnqaveeslrsvnlfhggvadkpagkySGGMKRRLSVAISLIGNPKVVYM 772
Cdd:cd03213 87 VPQDDILHPTLTVRETLMFAAKLRGL-------------------------------SGGERKRVSIALELVSNPSLLFL 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 773 DEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHS-MEEAEFLCDRLGIFVDGRL 825
Cdd:cd03213 136 DEPTSGLDSSSALQVMSLLRRlADTGRTIICSIHQpSSEIFELFDKLLLLSQGRV 190
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
640-829 |
7.42e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 109.31 E-value: 7.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 640 SGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQG---LDICKDMD------RVytsmGVCPQHDLLWETLTGREHLL 710
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlFDSRKKINlppqqrKI----GLVFQQYALFPHLNVRENLA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 711 FygRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTV 790
Cdd:cd03297 98 F--GLKRKRNREDRISVDELLDLLGLDH--LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 334185806 791 IKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIG 829
Cdd:cd03297 174 LKQIKKNLNIpvIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
613-817 |
1.80e-26 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 109.57 E-value: 1.80e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 613 DKLRKVYPGrdGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRvytsmG 691
Cdd:COG4525 7 RHVSVRYPG--GGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGpGADR-----G 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 692 VCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVY 771
Cdd:COG4525 80 VVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGL--ADFARRRIWQLSGGMRQRVGIARALAADPRFLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 334185806 772 MDEPSTGLDPASRKN-------LWtviknAKRHTAIILTTHSMEEAEFLCDRL 817
Cdd:COG4525 158 MDEPFGALDALTREQmqellldVW-----QRTGKGVFLITHSVEEALFLATRL 205
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
628-834 |
1.87e-26 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 112.25 E-value: 1.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC------------KDMDRVYTSMGVCPQ 695
Cdd:TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMkqspvelrevrrKKIGMVFQQFALFPH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 696 HDLLWETLTGREhllfygrlknLKGVDLNQAVE---ESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:TIGR01186 86 MTILQNTSLGPE----------LLGWPEQERKEkalELLKLVGL--EEYEHRYPDELSGGMQQRVGLARALAAEPDILLM 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334185806 773 DEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:TIGR01186 154 DEAFSALDPLIRDSMQDELKKlqATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
621-805 |
4.43e-26 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 107.36 E-value: 4.43e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 621 GRDGNPPKKAVRVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLV---KPTSGAAFVQGLDICKDMDRVYTSMGvcP 694
Cdd:cd03234 10 GLKAKNWNKYARILndvSLHVESGQVMAILGSSGSGKTTLLDAISGRVeggGTTSGQILFNGQPRKPDQFQKCVAYV--R 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 695 QHDLLWETLTGREHLLFYG--RLKNLKGVDLNQAVEESLRSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:cd03234 88 QDDILLPGLTVRETLTYTAilRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLIL 167
|
170 180 190
....*....|....*....|....*....|....
gi 334185806 773 DEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTH 805
Cdd:cd03234 168 DEPTSGLDSFTALNLVSTLSQlARRNRIVILTIH 201
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
614-829 |
5.62e-26 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 106.85 E-value: 5.62e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 614 KLRKVYPGRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGaafvqgldickdmdRVYTSMGVC 693
Cdd:cd03220 21 KKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG--------------TVTVRGRVS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 694 PQHDL---LWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVV 770
Cdd:cd03220 87 SLLGLgggFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL--GDFIDLPVKTYSSGMKARLAFAIATALEPDIL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 771 YMDEP-STGlDPASRKNLWTVIKNAKRHTAI-ILTTHSMEEAEFLCDRLGIFVDGRLQCIG 829
Cdd:cd03220 165 LIDEVlAVG-DAAFQEKCQRRLRELLKQGKTvILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
630-841 |
6.91e-26 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 114.84 E-value: 6.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAA--FVQGLDiCKDMD---RV-YTSmgvcpQHDLLWETL 703
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAwlFGQPVD-AGDIAtrrRVgYMS-----QAFSLYGEL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 704 TGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 783
Cdd:NF033858 355 TVRQNLELHARLFHLPAAEIAARVAEMLERFDL--ADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVA 432
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 784 RKNLW-TVIKNAKR-HTAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKELKGRYGGS 841
Cdd:NF033858 433 RDMFWrLLIELSREdGVTIFISTHFMNEAE-RCDRISLMHAGRVLASDTPAALVAARGAA 491
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
605-838 |
7.28e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 113.32 E-value: 7.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 605 STSHAIVCDKLRKVYPGRdgnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMD 684
Cdd:COG4987 329 PGGPSLELEDVSFRYPGA----GRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDL-RDLD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 685 R--VYTSMGVCPQhdllwetltgREHLlFYGRLK-NLKGVDLN---QAVEESLRSVNLfHGGVADKPAG----------K 748
Cdd:COG4987 404 EddLRRRIAVVPQ----------RPHL-FDTTLReNLRLARPDatdEELWAALERVGL-GDWLAALPDGldtwlgeggrR 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 749 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEfLCDRLGIFVDGRLQCI 828
Cdd:COG4987 472 LSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRILVLEDGRIVEQ 550
|
250
....*....|...
gi 334185806 829 GNPKEL---KGRY 838
Cdd:COG4987 551 GTHEELlaqNGRY 563
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
609-834 |
1.12e-25 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 109.39 E-value: 1.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYpgrdGNppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDRVYT 688
Cdd:COG3839 3 SLELENVSKSY----GG--VEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGG----RDVTDLPP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 S---MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRlsVAI--SL 763
Cdd:COG3839 73 KdrnIAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGL--EDLLDRKPKQLSGGQRQR--VALgrAL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG3839 149 VREPKVFLLDEPLSNLDAKLRVEMRAEIKRlhRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEEL 221
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
585-844 |
2.40e-25 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 112.62 E-value: 2.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 585 MEKLDVIH----ESEKVAQLMLESSTSHAIVCDKLRKVYPGRDgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINM 660
Cdd:COG2274 445 LERLDDILdlppEREEGRSKLSLPRLKGDIELENVSFRYPGDS----PPVLDNISLTIKPGERVAIVGRSGSGKSTLLKL 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 661 MTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQHDLLWE-TLtgREHLLFyGRlknlKGVDLnQAVEESLRSVNLfH 738
Cdd:COG2274 521 LLGLYEPTSGRILIDGIDLRQiDPASLRRQIGVVLQDVFLFSgTI--RENITL-GD----PDATD-EEIIEAARLAGL-H 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 739 GGVADKPAGkY-----------SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSM 807
Cdd:COG2274 592 DFIEALPMG-YdtvvgeggsnlSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHRL 670
|
250 260 270
....*....|....*....|....*....|....*....
gi 334185806 808 EEAEfLCDRlgIFV--DGRLQCIGNPKELKGRYGGSYVL 844
Cdd:COG2274 671 STIR-LADR--IIVldKGRIVEDGTHEELLARKGLYAEL 706
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
610-834 |
2.54e-25 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 105.73 E-value: 2.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGrdgnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS 689
Cdd:cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 ----MGVCPQHDLLWETLTGREHLLFyGRL----------KNLKGVDLNQAVEeSLRSVNLFHggVADKPAGKYSGGMKR 755
Cdd:cd03256 76 lrrqIGMIFQQFNLIERLSVLENVLS-GRLgrrstwrslfGLFPKEEKQRALA-ALERVGLLD--KAYQRADQLSGGQQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 756 RLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKriNREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231
|
.
gi 334185806 834 L 834
Cdd:cd03256 232 L 232
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
610-834 |
4.46e-25 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 105.59 E-value: 4.46e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRDgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDmdrvyts 689
Cdd:TIGR04520 1 IEVENVSFSYPESE----KPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLDE------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 mgvcpqhDLLWETltgREH--LLF-----------------YGrLKNLkGVDLN---QAVEESLRSVNLFHggVADKPAG 747
Cdd:TIGR04520 70 -------ENLWEI---RKKvgMVFqnpdnqfvgatveddvaFG-LENL-GVPREemrKRVDEALKLVGMED--FRDREPH 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 748 KYSGGMKRRlsVAIS--LIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEfLCDRLGIFVDG 823
Cdd:TIGR04520 136 LLSGGQKQR--VAIAgvLAMRPDIIILDEATSMLDPKGRKEVLETIRklNKEEGITVISITHDMEEAV-LADRVIVMNKG 212
|
250
....*....|.
gi 334185806 824 RLQCIGNPKEL 834
Cdd:TIGR04520 213 KIVAEGTPREI 223
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
610-834 |
4.88e-25 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 105.07 E-value: 4.88e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDR 685
Cdd:TIGR02315 2 LEVENLSKVYPNG-----KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITklrgKKLRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 VYTSMGVCPQHDLLWETLTGREHLL--FYGRLKNLKGVdLNQAVEE-------SLRSVNLFHggVADKPAGKYSGGMKRR 756
Cdd:TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLhgRLGYKPTWRSL-LGRFSEEdkeralsALERVGLAD--KAYQRADQLSGGQQQR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 757 LSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGItvIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
607-838 |
5.13e-25 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 104.78 E-value: 5.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 607 SHAIVCDKLRKVYP-------------GRDGNPPKKAVRVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSG 670
Cdd:COG1134 2 SSMIEVENVSKSYRlyhepsrslkellLRRRRTRREEFWALkdvSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 671 AAFVQG-----LDIckdmdrvytSMGVCPQhdllwetLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKP 745
Cdd:COG1134 82 RVEVNGrvsalLEL---------GAGFHPE-------LTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAEL--GDFIDQP 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 746 AGKYSGGMKRRLSVAISLIGNPKVVYMDEP-STGlDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRlGIFVD- 822
Cdd:COG1134 144 VKTYSSGMRARLAFAVATAVDPDILLVDEVlAVG-DAAFQKKCLARIRElRESGRTVIFVSHSMGAVRRLCDR-AIWLEk 221
|
250
....*....|....*.
gi 334185806 823 GRLQCIGNPKELKGRY 838
Cdd:COG1134 222 GRLVMDGDPEEVIAAY 237
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
610-824 |
1.03e-24 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 101.69 E-value: 1.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYT 688
Cdd:cd03228 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGVCPQHDLLwetltgrehllFYGrlknlkgvdlnqaveeSLRSvNLFhggvadkpagkySGGMKRRLSVAISLIGNPK 768
Cdd:cd03228 77 NIAYVPQDPFL-----------FSG----------------TIRE-NIL------------SGGQRQRIAIARALLRDPP 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEfLCDRlgIFV--DGR 824
Cdd:cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADR--IIVldDGR 171
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
609-825 |
1.26e-24 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 103.98 E-value: 1.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYPGRdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMD 684
Cdd:COG3638 2 MLELRNLSKRYPGG-----TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTalrgRALR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 685 RVYTSMGVCPQHDLLWETLT-------GRehlLfyGRLKNLKGV-------DLNQAVEeSLRSVNLfhGGVADKPAGKYS 750
Cdd:COG3638 77 RLRRRIGMIFQQFNLVPRLSvltnvlaGR---L--GRTSTWRSLlglfppeDRERALE-ALERVGL--ADKAYQRADQLS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 751 GGMKRRlsVAIS--LIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDR-LGIfVDGRL 825
Cdd:COG3638 149 GGQQQR--VAIAraLVQEPKLILADEPVASLDPKTARQVMDLLRriAREDGITVVVNLHQVDLARRYADRiIGL-RDGRV 225
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
619-825 |
2.00e-24 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 102.28 E-value: 2.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPgrdgNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQhd 697
Cdd:cd03245 12 YP----NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQ-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 llwetltgrEHLLFYGRLK-NLKGVDLNQAVEESLRSVNLfhGGV----ADKPAG----------KYSGGMKRRLSVAIS 762
Cdd:cd03245 86 ---------DVTLFYGTLRdNITLGAPLADDERILRAAEL--AGVtdfvNKHPNGldlqigergrGLSGGQRQAVALARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 763 LIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTH--SMEEaefLCDRLGIFVDGRL 825
Cdd:cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHrpSLLD---LVDRIIVMDSGRI 216
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
622-817 |
2.23e-24 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 101.95 E-value: 2.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 622 RDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRvyTSMGVCPQH--DLL 699
Cdd:cd03226 7 FSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERR--KSIGYVMQDvdYQL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 WETLTGREHLLfygRLKNLKgvDLNQAVEESLRSVNLFhgGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 779
Cdd:cd03226 85 FTDSVREELLL---GLKELD--AGNEQAETVLKDLDLY--ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
|
170 180 190
....*....|....*....|....*....|....*....
gi 334185806 780 DPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRL 817
Cdd:cd03226 158 DYKNMERVGELIRElAAQGKAVIVITHDYEFLAKVCDRV 196
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
610-808 |
2.44e-24 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 102.10 E-value: 2.44e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPgrdgnPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDR---- 685
Cdd:cd03292 1 IEFINVTKTYP-----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRaipy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 VYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHGgvADKPAGKYSGGMKRRLSVAISLIG 765
Cdd:cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK--HRALPAELSGGEQQRVAIARAIVN 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 334185806 766 NPKVVYMDEPSTGLDPASRKNLWTVIKNA-KRHTAIILTTHSME 808
Cdd:cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKInKAGTTVVVATHAKE 197
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
610-829 |
3.03e-24 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 101.56 E-value: 3.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDRVYTS 689
Cdd:cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG----RDVTDLPPK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 ---MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGN 766
Cdd:cd03301 71 drdIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH--LLDRKPKQLSGGQRQRVALGRAIVRE 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIKNAKRH--TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 829
Cdd:cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRlgTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
630-835 |
5.28e-24 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 101.36 E-value: 5.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK--DMDRVYTSMGVCPQHDLLWETLTGRE 707
Cdd:cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGlpPHERARAGIGYVPEGRRIFPELTVEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 HLLFYGRLKNlkgvdlNQAVEESLRSV-NLFH--GGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:cd03224 95 NLLLGAYARR------RAKRKARLERVyELFPrlKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 785 KNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 835
Cdd:cd03224 169 EEIFEAIRElRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
610-834 |
5.38e-24 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 101.89 E-value: 5.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC--KDMDRVY 687
Cdd:PRK10895 4 LTAKNLAKAYKGR------RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 688 TSMGVCPQHDLLWETLTGREHLLFYGRL-KNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGN 766
Cdd:PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEH--LRDSMGQSLSGGERRRVEIARALAAN 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIKNAK-RHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRdSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
629-834 |
5.92e-24 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 101.65 E-value: 5.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDRVYTSMGVCPQHDLLWETLTGREH 708
Cdd:cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA-TDVPVQERNVGFVFQHYALFRHMTVFDN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 709 LLFYGRLKNLKG----VDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:cd03296 95 VAFGLRVKPRSErppeAEIRAKVHELLKLVQL--DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 785 KNL--WTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:cd03296 173 KELrrWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
619-810 |
6.18e-24 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 100.19 E-value: 6.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC---KDMDRVYTSMGVCPQ 695
Cdd:TIGR01166 1 YPGG-----PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDysrKGLLERRQRVGLVFQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 696 H--DLLWETLTGrEHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMD 773
Cdd:TIGR01166 76 DpdDQLFAADVD-QDVAFGPLNLGLSEAEVERRVREALTAVGASG--LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152
|
170 180 190
....*....|....*....|....*....|....*...
gi 334185806 774 EPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEA 810
Cdd:TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEgMTVVISTHDVDLA 190
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
630-839 |
7.52e-24 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 108.29 E-value: 7.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC--KDMDRVYTSMGVCPQhDL---LWETLT 704
Cdd:NF033858 16 ALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMAdaRHRRAVCPRIAYMPQ-GLgknLYPTLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 705 GREHLLFYGRLKNLKGVDLNQAVEESLRSVNL--FhggvADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 782
Cdd:NF033858 95 VFENLDFFGRLFGQDAAERRRRIDELLRATGLapF----ADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPL 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 783 SRKNLWTVIKNAKRHTA---IILTTHSMEEAE-FlcDRLGIFVDGRLQCIGNPKELKGRYG 839
Cdd:NF033858 171 SRRQFWELIDRIRAERPgmsVLVATAYMEEAErF--DWLVAMDAGRVLATGTPAELLARTG 229
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
634-829 |
8.27e-24 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 101.00 E-value: 8.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRvytsMGVCPQHDLL-WETLTGREHLLF 711
Cdd:TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEpGPDR----MVVFQNYSLLpWLTVRENIALAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 712 YGRLKNLKGVDLNQAVEESLRSVNLFHGgvADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVI 791
Cdd:TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEA--ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 334185806 792 KN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 829
Cdd:TIGR01184 158 MQiwEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
602-839 |
1.79e-23 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 106.00 E-value: 1.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 602 LESSTSHAIVCDKLRKVYPGRdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK 681
Cdd:COG4988 329 LPAAGPPSIELEDVSFSYPGG-----RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 682 -DMDRVYTSMGVCPQHDLLWE-TLtgREHLLFYGRlknlkGVDlNQAVEESLRSVNLfHGGVADKPAG----------KY 749
Cdd:COG4988 404 lDPASWRRQIAWVPQNPYLFAgTI--RENLRLGRP-----DAS-DEELEAALEAAGL-DEFVAALPDGldtplgeggrGL 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 750 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFlCDRlgIFV--DGRLQC 827
Cdd:COG4988 475 SGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLAQ-ADR--ILVldDGRIVE 551
|
250
....*....|..
gi 334185806 828 IGNPKELKGRYG 839
Cdd:COG4988 552 QGTHEELLAKNG 563
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
624-829 |
6.34e-23 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 96.74 E-value: 6.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 624 GNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIckdmdrvytsmgvcpqhdllwETL 703
Cdd:cd03214 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL---------------------ASL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 704 TGREhllfygRLKNLkGVdLNQAveesLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 783
Cdd:cd03214 67 SPKE------LARKI-AY-VPQA----LELLGLAH--LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 334185806 784 RKNLWTVIKNAKRHT--AIILTTHSMEEAEFLCDRLGIFVDGRLQCIG 829
Cdd:cd03214 133 QIELLELLRRLARERgkTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
607-834 |
7.63e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 99.39 E-value: 7.63e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 607 SHAIVCDKLRKVYPGRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICkDMDRV 686
Cdd:PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTS-DEENL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 687 YT---SMGVCPQHDLLWETLTGREHLLFYGRlKNLkGVD---LNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVA 760
Cdd:PRK13633 81 WDirnKAGMVFQNPDNQIVATIVEEDVAFGP-ENL-GIPpeeIRERVDESLKKVGMYE--YRRHAPHLLSGGQKQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 761 ISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKelNKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKEI 231
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
597-833 |
1.22e-22 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 100.79 E-value: 1.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 597 VAQLMLESSTSHAIVcdKLRKVYPGRDGnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQG 676
Cdd:PRK09452 1 SKKLNKQPSSLSPLV--ELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 677 LDIC------KDMDRVYTSMGVCPqHdllwetLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYS 750
Cdd:PRK09452 76 QDIThvpaenRHVNTVFQSYALFP-H------MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE--FAQRKPHQLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 751 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCI 828
Cdd:PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGItfVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
|
....*
gi 334185806 829 GNPKE 833
Cdd:PRK09452 227 GTPRE 231
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
615-825 |
1.45e-22 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 100.15 E-value: 1.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRDGnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDRVYTSM 690
Cdd:COG1135 7 LSKTFPTKGG--PVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalseRELRAARRKI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 691 GVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhggvADKpAGKY----SGGMKRRLSVAISLIGN 766
Cdd:COG1135 85 GMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGL-----SDK-ADAYpsqlSGGQKQRVGIARALANN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:COG1135 159 PKVLLCDEATSALDPETTRSILDLLKdiNRELGLTIVLITHEMDVVRRICDRVAVLENGRI 219
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
610-834 |
2.01e-22 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 99.84 E-value: 2.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDM---DRv 686
Cdd:COG1118 3 IEVRNISKRFGSF------TLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLpprER- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 687 ytSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVAD-KPAgKYSGGMKRRLSVAISLIG 765
Cdd:COG1118 76 --RVGFVFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQL--EGLADrYPS-QLSGGQRQRVALARALAV 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 766 NPKVVYMDEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG1118 151 EPEVLLLDEPFGALDAKVRKELRRWLRRlhDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEV 221
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
615-825 |
2.20e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 99.49 E-value: 2.20e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGrdGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDRVYTSM 690
Cdd:PRK11153 7 ISKVFPQ--GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTalseKELRKARRQI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 691 GVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVnlfhgGVADKpAGKY----SGGMKRRLSVAISLIGN 766
Cdd:PRK11153 85 GMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELV-----GLSDK-ADRYpaqlSGGQKQRVAIARALASN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK11153 159 PKVLLCDEATSALDPATTRSILELLKdiNRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
634-824 |
2.46e-22 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 97.08 E-value: 2.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGA-AFVQGLDICK-DMDRVYTSMGV--------CPQHDLLWET- 702
Cdd:COG1119 22 ISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdVRLFGERRGGeDVWELRKRIGLvspalqlrFPRDETVLDVv 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 703 LTGrehllFY---GRLKNLKGVDLNQAvEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 779
Cdd:COG1119 102 LSG-----FFdsiGLYREPTDEQRERA-RELLELLGLAH--LADRPFGTLSQGEQRRVLIARALVKDPELLILDEPTAGL 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 334185806 780 DPASRKNLWTVIKN--AKRHTAIILTTHSMEE--AEFlcDRLGIFVDGR 824
Cdd:COG1119 174 DLGARELLLALLDKlaAEGAPTLVLVTHHVEEipPGI--THVLLLKDGR 220
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
610-825 |
5.18e-22 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 93.82 E-value: 5.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGrdGNPPkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYT 688
Cdd:cd03246 1 LEVENVSFRYPG--AEPP--VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGVCPQHDllwetltgrehllfygrlknlkgvdlnqaveeslrsvNLFHGGVADKpagKYSGGMKRRLSVAISLIGNPK 768
Cdd:cd03246 77 HVGYLPQDD-------------------------------------ELFSGSIAEN---ILSGGQRQRLGLARALYGNPR 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKNAK-RHTAIILTTHSMEEAEfLCDRLGIFVDGRL 825
Cdd:cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKaAGATRIVIAHRPETLA-SADRILVLEDGRV 173
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
630-845 |
1.36e-21 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 98.18 E-value: 1.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMD------------RVYTSMGVCPQHD 697
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDaelrevrrkkiaMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 LLWETLTGREhllfygrLKNLKGVDLNQAVEESLRSVNL--FHGGVADkpagKYSGGMKRRLSVAISLIGNPKVVYMDEP 775
Cdd:PRK10070 123 VLDNTAFGME-------LAGINAEERREKALDALRQVGLenYAHSYPD----ELSGGMRQRVGLARALAINPDILLMDEA 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 776 STGLDPASRKNLWT--VIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLT 845
Cdd:PRK10070 192 FSALDPLIRTEMQDelVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRT 263
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
634-837 |
1.54e-21 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 97.49 E-value: 1.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS-----MGVCPQHDLLWETLTGREH 708
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPpekrrIGYVFQEARLFPHLSVRGN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 709 LLfYGRlKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLW 788
Cdd:TIGR02142 96 LR-YGM-KRARPSERRISFERVIELLGIGH--LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 334185806 789 TVIKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGR 837
Cdd:TIGR02142 172 PYLERLHAEFGIpiLYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
610-823 |
1.82e-21 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 93.75 E-value: 1.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYpgrdGNppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC---KDMDRV 686
Cdd:cd03262 1 IEIKNLHKSF----GD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTddkKNINEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 687 YTSMGVCPQHDLLWETLTGREHLLFygRLKNLKGVDLNQAVE---ESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISL 763
Cdd:cd03262 75 RQKVGMVFQQFNLFPHLTVLENITL--APIKVKGMSKAEAEEralELLEKVGLAD--KADAYPAQLSGGQQQRVAIARAL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLgIFVDG 823
Cdd:cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDlAEEGMTMVVVTHEMGFAREVADRV-IFMDD 210
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
634-805 |
1.88e-21 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 93.33 E-value: 1.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREHLLFYG 713
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWH 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 714 RLKNlkgvdlNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWT-VIK 792
Cdd:cd03231 99 ADHS------DEQVEEALARVGL--NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEaMAG 170
|
170
....*....|...
gi 334185806 793 NAKRHTAIILTTH 805
Cdd:cd03231 171 HCARGGMVVLTTH 183
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
628-833 |
2.26e-21 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 94.70 E-value: 2.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYT-SMGVCPQHDLLWETLTGR 706
Cdd:PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLArRLALLPQHHLTPEGITVR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 707 E--------HLLFYGRLknlkGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 778
Cdd:PRK11231 95 ElvaygrspWLSLWGRL----SAEDNARVNQAMEQTRINH--LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 779 LDPASRKNLWTVIK--NAKRHTaIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:PRK11231 169 LDINHQVELMRLMRelNTQGKT-VVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
615-825 |
7.43e-21 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 90.18 E-value: 7.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGrdgnppkkaVRVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldickdmdrvytsmg 691
Cdd:cd03216 6 ITKRFGG---------VKALdgvSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG--------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 692 vcpqhdllwetltgrehllfygrlknlKGVDLNQaVEESLRS-VNLFHggvadkpagKYSGGMKRRLSVAISLIGNPKVV 770
Cdd:cd03216 62 ---------------------------KEVSFAS-PRDARRAgIAMVY---------QLSVGERQMVEIARALARNARLL 104
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 771 YMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:cd03216 105 ILDEPTAALTPAEVERLFKVIRRlRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
615-819 |
1.29e-20 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 93.96 E-value: 1.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRDGnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP---TSGAAFVQGLDIC----KDMDRV- 686
Cdd:COG0444 7 LKVYFPTRRG--VVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLklseKELRKIr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 687 -----------YTSM------GvcpqhDLLWETLtgREHllfygrlKNLKGVDLNQAVEESLRSVNLfhgGVADKPAGKY 749
Cdd:COG0444 85 greiqmifqdpMTSLnpvmtvG-----DQIAEPL--RIH-------GGLSKAEARERAIELLERVGL---PDPERRLDRY 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 750 ----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRK---NLwtvIK--NAKRHTAIILTTHSMEEAEFLCDRLGI 819
Cdd:COG0444 148 phelSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAqilNL---LKdlQRELGLAILFITHDLGVVAEIADRVAV 223
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
622-834 |
1.69e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 92.49 E-value: 1.69e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 622 RDGNppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDR-VYTSMGVCPQ--HDL 698
Cdd:PRK13647 15 KDGT---KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwVRSKVGLVFQdpDDQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 LWETlTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 778
Cdd:PRK13647 92 VFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD--FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 779 LDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13647 169 LDPRGQETLMEILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
615-834 |
1.96e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 92.45 E-value: 1.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPgrDGNppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI---CKDMDRVYTSMG 691
Cdd:PRK13639 7 LKYSYP--DGT---EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIkydKKSLLEVRKTVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 692 VCPQH--DLLWETlTGREHLLFyGRLK-NLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPK 768
Cdd:PRK13639 82 IVFQNpdDQLFAP-TVEEDVAF-GPLNlGLSKEEVEKRVKEALKAVGM--EGFENKPPHHLSGGQKKRVAIAGILAMKPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKNA-KRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLnKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
634-805 |
3.04e-20 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 89.86 E-value: 3.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYtsmgvcpqHDLLW--------ETLTG 705
Cdd:PRK13538 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH--------QDLLYlghqpgikTELTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 REHLLFYGRLKNLKGVDlnqAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRK 785
Cdd:PRK13538 92 LENLRFYQRLHGPGDDE---ALWEALAQVGL--AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVA 166
|
170 180
....*....|....*....|.
gi 334185806 786 NLWTVI-KNAKRHTAIILTTH 805
Cdd:PRK13538 167 RLEALLaQHAEQGGMVILTTH 187
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
634-834 |
3.59e-20 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 93.25 E-value: 3.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK------DMDRVYTSMGVCPqHDLLWETLTgre 707
Cdd:PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHrsiqqrDICMVFQSYALFP-HMSLGENVG--- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 hllfYG-RLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKN 786
Cdd:PRK11432 101 ----YGlKMLGVPKEERKQRVKEALELVDL--AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 334185806 787 LWTVIKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK11432 175 MREKIRELQQQFNItsLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
630-835 |
4.32e-20 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 90.82 E-value: 4.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCP--QHDLLWETLTGRE 707
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRtfQHVRLFREMTVIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 HLLF--YGRLKN------LKGVDLNQAVEES-------LRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:PRK11300 100 NLLVaqHQQLKTglfsglLKTPAFRRAESEAldraatwLERVGL--LEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 773 DEPSTGLDPASRKNLWTVIKNAKRH--TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 835
Cdd:PRK11300 178 DEPAAGLNPKETKELDELIAELRNEhnVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
622-805 |
4.69e-20 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 88.95 E-value: 4.69e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 622 RDGNPpkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWE 701
Cdd:TIGR01189 10 RGERM---LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 702 TLTGREHLLFYGRLknLKGVDLNqaVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 781
Cdd:TIGR01189 87 ELSALENLHFWAAI--HGGAQRT--IEDALAAVGL--TGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDK 160
|
170 180
....*....|....*....|....*
gi 334185806 782 ASRKNLWTVIK-NAKRHTAIILTTH 805
Cdd:TIGR01189 161 AGVALLAGLLRaHLARGGIVLLTTH 185
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
628-834 |
6.66e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 90.82 E-value: 6.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKD-MDRVYTSMGVCPQH-DLLWETLTG 705
Cdd:PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEnLKEIRKKIGIIFQNpDNQFIGATV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 REHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRK 785
Cdd:PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGM--EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 334185806 786 NLWTVIKN--AKRHTAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13632 180 EIKKIMVDlrKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEI 229
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
630-834 |
7.57e-20 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 89.66 E-value: 7.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDM---DRVYTSMGVCPQHDLLWETLTGR 706
Cdd:COG0410 18 VLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDI-TGLpphRIARLGIGYVPEGRRIFPSLTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 707 EHLL--FYGRlknlkgvDLNQAVEESLRSV-NLFhggvadkP---------AGKYSGGMKRRLSVAISLIGNPKVVYMDE 774
Cdd:COG0410 97 ENLLlgAYAR-------RDRAEVRADLERVyELF-------PrlkerrrqrAGTLSGGEQQMLAIGRALMSRPKLLLLDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 775 PSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG0410 163 PSLGLAPLIVEEIFEIIRRLNREgVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAEL 223
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
629-834 |
1.59e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 93.33 E-value: 1.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMD--------RVYTSMGVCPQ----- 695
Cdd:TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTkpgpdgrgRAKRYIGILHQeydly 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 696 -HDLLWETLTGREHLLFYGRLKNLKGVDLNQAV---EESLRSvnlfhggVADKPAGKYSGGMKRRLSVAISLIGNPKVVY 771
Cdd:TIGR03269 378 pHRTVLDNLTEAIGLELPDELARMKAVITLKMVgfdEEKAEE-------ILDKYPDELSEGERHRVALAQVLIKEPRIVI 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 772 MDEPSTGLDPASRKNLWTVIKNAKR--HTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:TIGR03269 451 LDEPTGTMDPITKVDVTHSILKAREemEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
615-834 |
1.05e-18 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 90.46 E-value: 1.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGrdgnppkkaVRVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldickdmdRVYT--- 688
Cdd:COG1129 10 ISKSFGG---------VKALdgvSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDG--------EPVRfrs 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 -----SMGVC--PQHDLLWETLTGREHLlFYGRLKNLKG-VD---LNQAVEESLRSVNLfhgGV-ADKPAGKYSGGmKRR 756
Cdd:COG1129 73 prdaqAAGIAiiHQELNLVPNLSVAENI-FLGREPRRGGlIDwraMRRRARELLARLGL---DIdPDTPVGDLSVA-QQQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 757 LsVAI--SLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:COG1129 148 L-VEIarALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQgVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAE 226
|
.
gi 334185806 834 L 834
Cdd:COG1129 227 L 227
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
634-825 |
1.05e-18 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 85.62 E-value: 1.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC-KDMDRVYTSMGVcpQHDLLWETLTGREHLLFy 712
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTaAPPADRPVSMLF--QENNLFAHLTVEQNVGL- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 713 GRLKNLKgvdLN----QAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLW 788
Cdd:cd03298 94 GLSPGLK---LTaedrQAIEVALARVGL--AGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 334185806 789 TVIKNAKRHT--AIILTTHSMEEAEFLCDRLgIFVD-GRL 825
Cdd:cd03298 169 DLVLDLHAETkmTVLMVTHQPEDAKRLAQRV-VFLDnGRI 207
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
628-834 |
1.10e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 86.75 E-value: 1.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSF---INMMTGLVK--PTSGAAFVQG----------LDICKDMDRVYTSMGV 692
Cdd:PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLlrsINRMNDLNPevTITGSIVYNGhniysprtdtVDLRKEIGMVFQQPNP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 693 CPqhdllwetLTGREHLLFYGRLKNLKGVD-LNQAVEESLRSVNLFHGgVADK---PAGKYSGGMKRRLSVAISLIGNPK 768
Cdd:PRK14239 98 FP--------MSIYENVVYGLRLKGIKDKQvLDEAVEKSLKGASIWDE-VKDRlhdSALGLSGGQQQRVCIARVLATSPK 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK14239 169 IILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
607-817 |
1.56e-18 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 90.04 E-value: 1.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 607 SHAIVCDKLRKVYPGRDgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDR 685
Cdd:TIGR02857 319 ASSLEFSGVSVAYPGRR-----PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDADS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 VYTSMGVCPQHDLLWETlTGREHLLFYgrlknLKGVDlNQAVEESLRSVNLfHGGVADKPAG----------KYSGGMKR 755
Cdd:TIGR02857 394 WRDQIAWVPQHPFLFAG-TIAENIRLA-----RPDAS-DAEIREALERAGL-DEFVAALPQGldtpigeggaGLSGGQAQ 465
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 756 RLSVAISLIGNPKVVYMDEPSTGLDPASRKNLW-TVIKNAKRHTaIILTTHSMEEAEfLCDRL 817
Cdd:TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEAEVLeALRALAQGRT-VLLVTHRLALAA-LADRI 526
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
628-834 |
1.88e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 86.25 E-value: 1.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVK------PTSGAAFVQGLDICK-DMDRVYTSMGVCPQHDLLW 700
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQiDAIKLRKEVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 701 ETLTGREHLLFYGRLKNLKGV-DLNQAVEESLRSVNLFHGgVADK---PAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 776
Cdd:PRK14246 103 PHLSIYDNIAYPLKSHGIKEKrEIKKIVEECLRKVGLWKE-VYDRlnsPASQLSGGQQQRLTIARALALKPKVLLMDEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 777 TGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK14246 182 SMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
610-808 |
2.37e-18 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 84.72 E-value: 2.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppKKAVRVLSLAVPSGE-CFgMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK----DMD 684
Cdd:COG2884 2 IRFENVSKRYPGG-----REALSDVSLEIEKGEfVF-LTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkrrEIP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 685 RVYTSMGVCPQ-HDLLwETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISL 763
Cdd:COG2884 76 YLRRRIGVVFQdFRLL-PDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGL--SDKAKALPHELSGGEQQRVAIARAL 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSME 808
Cdd:COG2884 153 VNRPELLLADEPTGNLDPETSWEIMELLEEINRRgTTVLIATHDLE 198
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
619-834 |
2.42e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 86.37 E-value: 2.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRDGNP-PKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC-----KDMDRVYTSMGV 692
Cdd:PRK13646 10 YTYQKGTPyEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThktkdKYIRPVRKRIGM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 693 CPQ--HDLLWETLTGREhlLFYGRlKNLkGVDLNQAVEESLRS-VNL-FHGGVADKPAGKYSGGMKRRLSVAISLIGNPK 768
Cdd:PRK13646 90 VFQfpESQLFEDTVERE--IIFGP-KNF-KMNLDEVKNYAHRLlMDLgFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13646 166 IIVLDEPTAGLDPQSKRQVMRLLKslQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
610-834 |
3.27e-18 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 84.81 E-value: 3.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnpPKKAvrvlSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDRVY-- 687
Cdd:COG3840 2 LRLDDLTYRYGDF----PLRF----DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNG----QDLTALPpa 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 688 ---TSMgVCPQHDLLWEtLTGREHLLFyGRLKNLKgvdLN----QAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVA 760
Cdd:COG3840 70 erpVSM-LFQENNLFPH-LTVAQNIGL-GLRPGLK---LTaeqrAQVEQALERVGL--AGLLDRLPGQLSGGQRQRVALA 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 761 ISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLgIFV-DGRLQCIGNPKEL 834
Cdd:COG3840 142 RCLVRKRPILLLDEPFSALDPALRQEMLDLVDelCRERGLTVLMVTHDPEDAARIADRV-LLVaDGRIAADGPTAAL 217
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
634-821 |
6.24e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 83.38 E-value: 6.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIckDMDRVYTSMGVCPQHDLLWETLTGREHLLFYG 713
Cdd:PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--DDPDVAEACHYLGHRNAMKPALTVAENLEFWA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 714 RLKNlkgvDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIkn 793
Cdd:PRK13539 99 AFLG----GEELDIAAALEAVGL--APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI-- 170
|
170 180 190
....*....|....*....|....*....|....*
gi 334185806 794 aKRHTA----IILTTHS---MEEAEFLcdRLGIFV 821
Cdd:PRK13539 171 -RAHLAqggiVIAATHIplgLPGAREL--DLGPFA 202
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
630-834 |
6.38e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 85.28 E-value: 6.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDrvYTSMGVCPQHDLLWETLTGREHL 709
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG----KPID--YSRKGLMKLRESVGMVFQDPDNQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LF---------YGRLK-NLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 779
Cdd:PRK13636 95 LFsasvyqdvsFGAVNlKLPEDEVRKRVDNALKRTGIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 780 DPASRKNLWTVIKNAKRHT--AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13636 173 DPMGVSEIMKLLVEMQKELglTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
614-806 |
7.99e-18 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 87.80 E-value: 7.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 614 KLRKVYPGRDGNPPkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGV 692
Cdd:TIGR02868 336 ELRDLSAGYPGAPP--VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSlDQDEVRRRVSV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 693 CPQHDLLWETlTGREHLLFyGRlknlKGVDlNQAVEESLRSVNLfHGGVADKPAG----------KYSGGMKRRLSVAIS 762
Cdd:TIGR02868 414 CAQDAHLFDT-TVRENLRL-AR----PDAT-DEELWAALERVGL-ADWLRALPDGldtvlgeggaRLSGGERQRLALARA 485
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 334185806 763 LIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHS 806
Cdd:TIGR02868 486 LLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
630-834 |
1.29e-17 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 83.12 E-value: 1.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC---KDMDRVYTSMGVCPQHDLLWETL 703
Cdd:COG1126 13 DLEVLkgiSLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTdskKDINKLRRKVGMVFQQFNLFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 704 TGREHLLfYGRLKnLKGVDLNQAVE---ESLRSVnlfhgGVADKpAGKY----SGGMKRRlsVAI--SLIGNPKVVYMDE 774
Cdd:COG1126 93 TVLENVT-LAPIK-VKKMSKAEAEEramELLERV-----GLADK-ADAYpaqlSGGQQQR--VAIarALAMEPKVMLFDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 775 PSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLgIFVD-GRLQCIGNPKEL 834
Cdd:COG1126 163 PTSALDPELVGEVLDVMRDlAKEGMTMVVVTHEMGFAREVADRV-VFMDgGRIVEEGPPEEF 223
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
619-817 |
2.18e-17 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 82.83 E-value: 2.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDRVYTSMGVCPQHDL 698
Cdd:PRK11248 11 YGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG----KPVEGPGAERGVVFQNEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 LWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 778
Cdd:PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL--EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 334185806 779 LDPASRKNLWTVIKNAKRHTA--IILTTHSMEEAEFLCDRL 817
Cdd:PRK11248 159 LDAFTREQMQTLLLKLWQETGkqVLLITHDIEEAVFMATEL 199
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
627-825 |
2.34e-17 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 82.96 E-value: 2.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 627 PKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFV-----QGLDICK--DMDR---VYTSMGVCPQH 696
Cdd:TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYimrsgAELELYQlsEAERrrlMRTEWGFVHQN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 DL------------LWETL--TGREHllfYGRLKnlkgvdlnQAVEESLRSVNLFHGGVADKPAgKYSGGMKRRLSVAIS 762
Cdd:TIGR02323 95 PRdglrmrvsaganIGERLmaIGARH---YGNIR--------ATAQDWLEEVEIDPTRIDDLPR-AFSGGMQQRLQIARN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 763 LIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKR--HTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRdlGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
640-834 |
2.35e-17 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 86.64 E-value: 2.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 640 SGECFGMLGPNGAGKTSFINM-----MTGLVKptSGAAFVQGLDICKDMDRVYTsmGVCPQHDLLWETLTGREHLLFYGR 714
Cdd:TIGR00955 50 PGELLAVMGSSGAGKTTLMNAlafrsPKGVKG--SGSVLLNGMPIDAKEMRAIS--AYVQQDDLFIPTLTVREHLMFQAH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 715 LK---NLKGVDLNQAVEESLRSVNLFHG-----GVADKPAGkYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKN 786
Cdd:TIGR00955 126 LRmprRVTKKEKRERVDEVLQALGLRKCantriGVPGRVKG-LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 334185806 787 LWTVIKN-AKRHTAIILTTHS-MEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:TIGR00955 205 VVQVLKGlAQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQA 254
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
623-834 |
2.54e-17 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 84.89 E-value: 2.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 623 DGNPpkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC------KDMDRVYTSMGVCPQh 696
Cdd:PRK11607 30 DGQH---AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLShvppyqRPINMMFQSYALFPH- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 dllwetLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 776
Cdd:PRK11607 106 ------MTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE--FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 777 TGLDPASRKNL-WTVIKNAKRHTAI-ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK11607 178 GALDKKLRDRMqLEVVDILERVGVTcVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
635-834 |
2.70e-17 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 84.38 E-value: 2.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 635 SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYT-----SMGVCPQHDLLWETLTGREHL 709
Cdd:COG4148 19 DFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFLpphrrRIGYVFQEARLFPHLSVRGNL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LfYGR---LKNLKGVDLNQAVEeslrsvnLFH-GGVADKPAGKYSGGMKRRlsVAI--SLIGNPKVVYMDEPSTGLDPAS 783
Cdd:COG4148 99 L-YGRkraPRAERRISFDEVVE-------LLGiGHLLDRRPATLSGGERQR--VAIgrALLSSPRLLLMDEPLAALDLAR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 334185806 784 RKNLWTVIKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG4148 169 KAEILPYLERLRDELDIpiLYVSHSLDEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
634-834 |
4.00e-17 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 83.98 E-value: 4.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDRVYT---SMGVCPQHDLLWETLTGREHLL 710
Cdd:PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG----TDVSRLHArdrKVGFVFQHYALFRHMTVFDNIA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 711 F----YGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKN 786
Cdd:PRK10851 97 FgltvLPRRERPNAAAIKAKVTQLLEMVQLAH--LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 787 LWTVIKnaKRHTAIILT----THSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK10851 175 LRRWLR--QLHEELKFTsvfvTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
619-810 |
2.45e-16 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 78.04 E-value: 2.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRDgnppkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDickdmdrvytSMGVCPQHDL 698
Cdd:NF040873 2 YGGRP------VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGA----------RVAYVPQRSE 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 LWETL--TGRE--------HLLFYGRLknlkGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPK 768
Cdd:NF040873 66 VPDSLplTVRDlvamgrwaRRGLWRRL----TRDDRAAVDDALERVGL--ADLAGRQLGELSGGQRQRALLAQGLAQEAD 139
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEA 810
Cdd:NF040873 140 LLLLDEPTTGLDAESRERIIALLAEeHARGATVVVVTHDLELV 182
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
631-811 |
3.32e-16 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 78.29 E-value: 3.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 631 VRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP---TSGAAFVQGldicKDMDRVYT---SMGVCPQHDLLWETLT 704
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNG----RRLTALPAeqrRIGILFQDDLLFPHLS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 705 GREHLLFyGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:COG4136 93 VGENLAF-ALPPTIGRAQRRARVEQALEEAGL--AGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALR 169
|
170 180
....*....|....*....|....*....
gi 334185806 785 KNL--WTVIKNAKRHTAIILTTHSMEEAE 811
Cdd:COG4136 170 AQFreFVFEQIRQRGIPALLVTHDEEDAP 198
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
629-838 |
4.45e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 78.80 E-value: 4.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVK-----PTSGAAFVQGLDICKdMD------RVYTSMGV-CPQH 696
Cdd:PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVYLDGQDIFK-MDvielrrRVQMVFQIpNPIP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 DL-LWETLTGREHLlfyGRLKNLKGvDLNQAVEESLRSVNLFH--GGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMD 773
Cdd:PRK14247 96 NLsIFENVALGLKL---NRLVKSKK-ELQERVRWALEKAQLWDevKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 774 EPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG-------NPK-ELKGRY 838
Cdd:PRK14247 172 EPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGptrevftNPRhELTEKY 244
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
634-834 |
4.69e-16 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 78.60 E-value: 4.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI---CKDMDRVYTSMGVCPQHDLLWETLTGREHLL 710
Cdd:PRK09493 20 IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVndpKVDERLIRQEAGMVFQQFYLFPHLTALENVM 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 711 FyG--RLKNLKGVDLNQAVEESLRSVnlfhgGVADKpAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:PRK09493 100 F-GplRVRGASKEEAEKQARELLAKV-----GLAER-AHHYpselSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 785 KNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLgIFVD-GRLQCIGNPKEL 834
Cdd:PRK09493 173 HEVLKVMQDlAEEGMTMVIVTHEIGFAEKVASRL-IFIDkGRIAEDGDPQVL 223
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
585-826 |
5.24e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 82.03 E-value: 5.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 585 MEKLDVIH--ESEKVAQLMLES---STSHAIVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFIN 659
Cdd:COG0488 286 LEKLEREEppRRDKTVEIRFPPperLGKKVLELEGLSKSYGD------KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 660 MMTGLVKPTSGaAFVQGldickdmDRVytSMGVCPQH-DLLWETLTGREHLLFYGRlknlkgvdlnQAVEESLRSV---N 735
Cdd:COG0488 360 LLAGELEPDSG-TVKLG-------ETV--KIGYFDQHqEELDPDKTVLDELRDGAP----------GGTEQEVRGYlgrF 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 736 LFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRknlwTVIKNAKRHT--AIILTTHSMeeaEFL 813
Cdd:COG0488 420 LFSGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETL----EALEEALDDFpgTVLLVSHDR---YFL 492
|
250
....*....|....*.
gi 334185806 814 ---CDRLGIFVDGRLQ 826
Cdd:COG0488 493 drvATRILEFEDGGVR 508
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
634-834 |
1.52e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 77.86 E-value: 1.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC-----KDMDRVYTSMGVC---PQHDLLWETLtg 705
Cdd:PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknKDIKQIRKKVGLVfqfPESQLFEETV-- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 rehllfygrLKNLK------GVDLNQAV---EESLRSV----NLFhggvaDKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:PRK13649 104 ---------LKDVAfgpqnfGVSQEEAEalaREKLALVgiseSLF-----EKNPFELSGGQMRRVAIAGILAMEPKILVL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 773 DEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13649 170 DEPTAGLDPKGRKELMTLFKKLHQSgMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
628-839 |
2.25e-15 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 77.00 E-value: 2.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSF---INMMTGLVkP---TSGAAFVQGLDI-CKDMDRVytsmgvcpqhdllw 700
Cdd:COG1117 24 KQALKDINLDIPENKVTALIGPSGCGKSTLlrcLNRMNDLI-PgarVEGEILLDGEDIyDPDVDVV-------------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 701 eTLTGREHLLF---------------YG-RLKNLKG-VDLNQAVEESLRSVNLFHGgVADK---PAGKYSGGMKRRLSVA 760
Cdd:COG1117 89 -ELRRRVGMVFqkpnpfpksiydnvaYGlRLHGIKSkSELDEIVEESLRKAALWDE-VKDRlkkSALGLSGGQQQRLCIA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 761 ISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL-------QCIGNPKE 833
Cdd:COG1117 167 RALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNMQQAARVSDYTAFFYLGELvefgpteQIFTNPKD 246
|
250
....*....|..
gi 334185806 834 ------LKGRYG 839
Cdd:COG1117 247 krtedyITGRFG 258
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
628-834 |
2.87e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 77.15 E-value: 2.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQH--DLLWETLT 704
Cdd:PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKeNIREVRKFVGLVFQNpdDQIFSPTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 705 grEHLLFYGRLkNLkGVD---LNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 781
Cdd:PRK13652 97 --EQDIAFGPI-NL-GLDeetVAHRVSSALHMLGLEE--LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 782 ASRKNLWTVIKN-AKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13652 171 QGVKELIDFLNDlPETYgMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
626-834 |
3.83e-15 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 79.44 E-value: 3.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 626 PPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMG--VCPQHDLLWETL 703
Cdd:PRK09700 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGigIIYQELSVIDEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 704 TGREHlLFYGRL--KNLKGVDLNQAVEESLR-SVNLFHGGVA---DKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 777
Cdd:PRK09700 96 TVLEN-LYIGRHltKKVCGVNIIDWREMRVRaAMMLLRVGLKvdlDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 778 GLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK09700 175 SLTNKEVDYLFLIMNQLRKEgTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
628-834 |
3.90e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 76.98 E-value: 3.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC-----KDMDRVYTSMGVC---PQHDLL 699
Cdd:PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknKKLKPLRKKVGIVfqfPEHQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 WETLtgrEHLLFYGRLkNLkGV---DLNQAVEESLRSVNLFHGgVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 776
Cdd:PRK13634 100 EETV---EKDICFGPM-NF-GVseeDAKQKAREMIELVGLPEE-LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 777 TGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13634 174 AGLDPKGRKEMMEMFYKlhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
634-836 |
4.08e-15 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 76.16 E-value: 4.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI--CKDMD---RVY---------TSMGVCPQHDLL 699
Cdd:PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInlVRDKDgqlKVAdknqlrllrTRLTMVFQHFNL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 WETLTGREHLLfYGRLKNLkGVDLNQAVEESLRSVNLFhgGVADKPAGKY----SGGMKRRLSVAISLIGNPKVVYMDEP 775
Cdd:PRK10619 104 WSHMTVLENVM-EAPIQVL-GLSKQEARERAVKYLAKV--GIDERAQGKYpvhlSGGQQQRVSIARALAMEPEVLLFDEP 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 776 STGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKG 836
Cdd:PRK10619 180 TSALDPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
610-833 |
4.55e-15 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 79.41 E-value: 4.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRDgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYT 688
Cdd:COG4618 331 LSVENLTVVPPGSK----RPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDREELGR 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGVCPQhDLlwetltgrEhlLFYGRLK-N---LKGVDlNQAVEESLRSVNLfHGGVADKPAGkY-----------SGGM 753
Cdd:COG4618 407 HIGYLPQ-DV--------E--LFDGTIAeNiarFGDAD-PEKVVAAAKLAGV-HEMILRLPDG-YdtrigeggarlSGGQ 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 754 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMeEAEFLCDRLGIFVDGRLQCIGnPK 832
Cdd:COG4618 473 RQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARgATVVVITHRP-SLLAAVDKLLVLRDGRVQAFG-PR 550
|
.
gi 334185806 833 E 833
Cdd:COG4618 551 D 551
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
619-838 |
7.33e-15 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 78.67 E-value: 7.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDR--VYTSMGVCPQh 696
Cdd:COG1132 349 YPGD-----RPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDI-RDLTLesLRRQIGVVPQ- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 dllwetltgrEHLLFYGRLK-NLKGVDLN---QAVEESLRSVNLfHGGVADKPAG----------KYSGGMKRRLSVAIS 762
Cdd:COG1132 422 ----------DTFLFSGTIReNIRYGRPDatdEEVEEAAKAAQA-HEFIEALPDGydtvvgergvNLSGGQRQRIAIARA 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 763 LIGNPKVVYMDEPSTGLDPAS----RKNLWTVIKNakrHTAII----LTT--HsmeeaeflCDRlgIFV--DGRLQCIGN 830
Cdd:COG1132 491 LLKDPPILILDEATSALDTETealiQEALERLMKG---RTTIViahrLSTirN--------ADR--ILVldDGRIVEQGT 557
|
250
....*....|.
gi 334185806 831 PKEL---KGRY 838
Cdd:COG1132 558 HEELlarGGLY 568
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
631-845 |
1.23e-14 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 77.19 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 631 VRVLS---LAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI----CKDMDRVYTSMgvcPQHDLLWETL 703
Cdd:PRK09536 16 TTVLDgvdLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVealsARAASRRVASV---PQDTSLSFEF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 704 TGRE--------HLlfyGRLKNLKGVDlNQAVEESLR--SVNLFhggvADKPAGKYSGGMKRRLSVAISLIGNPKVVYMD 773
Cdd:PRK09536 93 DVRQvvemgrtpHR---SRFDTWTETD-RAAVERAMErtGVAQF----ADRPVTSLSGGERQRVLLARALAQATPVLLLD 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 774 EPSTGLDPASR-KNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE------LKGRYGGSYVLT 845
Cdd:PRK09536 165 EPTASLDINHQvRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADvltadtLRAAFDARTAVG 243
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
628-834 |
1.32e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 73.33 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGL--VKPTSGAAFVQGLDIcKDM---DRVYTSMGVCPQHDLlwet 702
Cdd:cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDI-TDLppeERARLGIFLAFQYPP---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 703 ltgrehllfygrlkNLKGVdlnqAVEESLRSVNLfhggvadkpagKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 782
Cdd:cd03217 88 --------------EIPGV----KNADFLRYVNE-----------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 334185806 783 SRKNLWTVIKN-AKRHTAIILTTHSMEEAEFL-CDRLGIFVDGRLQCIGnPKEL 834
Cdd:cd03217 139 ALRLVAEVINKlREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG-DKEL 191
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
614-834 |
1.46e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 75.02 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 614 KLRKV---YPgrDGNPpkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC--KDMDRVYT 688
Cdd:PRK13644 3 RLENVsysYP--DGTP---ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGdfSKLQGIRK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGVCPQHDllwET-LTGR---EHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLI 764
Cdd:PRK13644 78 LVGIVFQNP---ETqFVGRtveEDLAFGPENLCLPPIEIRKRVDRALAEIGL--EKYRHRSPKTLSGGQGQCVALAGILT 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334185806 765 GNPKVVYMDEPSTGLDPASRKnlwTVIKNAKR-H---TAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13644 153 MEPECLIFDEVTSMLDPDSGI---AVLERIKKlHekgKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENV 222
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
645-837 |
1.84e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 74.66 E-value: 1.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 645 GMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDrvYTSMGVCPQHDLLWETLTGREHLLFYG--------RLK 716
Cdd:PRK13638 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG----KPLD--YSKRGLLALRQQVATVFQDPEQQIFYTdidsdiafSLR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 717 NLkGV---DLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN 793
Cdd:PRK13638 105 NL-GVpeaEITRRVDEALTLVDAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 334185806 794 -AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGR 837
Cdd:PRK13638 182 iVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
630-820 |
2.16e-14 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 74.43 E-value: 2.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFI---NMMTGLVKP--TSGAAFVQGLDI-CKDMD--RVYTSMGVCPQHDLLWE 701
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILrcfNRLNDLIPGfrVEGKVTFHGKNLyAPDVDpvEVRRRIGMVFQKPNPFP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 702 TlTGREHLLFYGRLKNLKGvDLNQAVEESLRSVNLFHGgVADK---PAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 778
Cdd:PRK14243 105 K-SIYDNIAYGARINGYKG-DMDELVERSLRQAALWDE-VKDKlkqSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 334185806 779 LDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIF 820
Cdd:PRK14243 182 LDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFF 223
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
628-834 |
2.32e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 74.48 E-value: 2.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC-----KDMDRVYTSMGVC---PQHDLL 699
Cdd:PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnKNLKKLRKKVSLVfqfPEAQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 WETLTgrEHLLFYGrlKNLkGVDLNQAVEES---LRSVNLfHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 776
Cdd:PRK13641 100 ENTVL--KDVEFGP--KNF-GFSEDEAKEKAlkwLKKVGL-SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 777 TGLDPASRKNLWTVIKNAKR--HTaIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQKagHT-VILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
634-834 |
2.79e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 74.02 E-value: 2.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGL--------DICKDMDRVYTS-----MGVCPQHDLLW 700
Cdd:PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQaitddnfeKLRKHIGIVFQNpdnqfVGSIVKYDVAF 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 701 etltGRE-HLLFYGrlknlkgvDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 779
Cdd:PRK13648 108 ----GLEnHAVPYD--------EMHRRVSEALKQVDMLE--RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 780 DPASRKNLWTVIK--NAKRHTAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13648 174 DPDARQNLLDLVRkvKSEHNITIISITHDLSEA-MEADHVIVMNKGTVYKEGTPTEI 229
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
601-825 |
4.55e-14 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 72.47 E-value: 4.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 601 MLESSTShAIVCDKLRKVYPGRDGnppkkAVRVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGL 677
Cdd:COG4181 1 MSSSSAP-IIELRGLTKTVGTGAG-----ELTILkgiSLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 678 DICK-DMDRVYT----SMGVCPQHDLLWETLTGREhllfygrlkN------LKGV-DLNQAVEESLRSVNLfhGGVADKP 745
Cdd:COG4181 75 DLFAlDEDARARlrarHVGFVFQSFQLLPTLTALE---------NvmlpleLAGRrDARARARALLERVGL--GHRLDHY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 746 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKnlwTVIK-----NAKRHTAIILTTHSMEEAEfLCDRLGIF 820
Cdd:COG4181 144 PAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGE---QIIDllfelNRERGTTLVLVTHDPALAA-RCDRVLRL 219
|
....*
gi 334185806 821 VDGRL 825
Cdd:COG4181 220 RAGRL 224
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
609-838 |
5.83e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 72.95 E-value: 5.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRkVYPGRDgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVK-----PTSGAAFVQGLDI-CKD 682
Cdd:PRK14267 4 AIETVNLR-VYYGSN-----HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElneeaRVEGEVRLFGRNIySPD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 683 MD--RVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNL--KGVDLNQAVEESLRSVNLF---HGGVADKPaGKYSGGMKR 755
Cdd:PRK14267 78 VDpiEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALWdevKDRLNDYP-SNLSGGQRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 756 RLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIG------ 829
Cdd:PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGptrkvf 236
|
250
....*....|.
gi 334185806 830 -NPK-ELKGRY 838
Cdd:PRK14267 237 eNPEhELTEKY 247
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
598-824 |
6.82e-14 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 73.99 E-value: 6.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 598 AQLMLESSTSHAIVCDkLRKVYPGRDGNppKKAVRVLSLAVPSGECFGMLGPNGAGK--TSFINMmtGLVKP---TSGAA 672
Cdd:PRK09473 2 VPLAQQQADALLDVKD-LRVTFSTPDGD--VTAVNDLNFSLRAGETLGIVGESGSGKsqTAFALM--GLLAAngrIGGSA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 673 FVQGLDIC----KDMDRV------------YTS----MGVCPQhdlLWETLtgREHllfygrlknlKGVDLNQAVEESLR 732
Cdd:PRK09473 77 TFNGREILnlpeKELNKLraeqismifqdpMTSlnpyMRVGEQ---LMEVL--MLH----------KGMSKAEAFEESVR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 733 SVNLFHGGVADKPAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKR--HTAIILTTHS 806
Cdd:PRK09473 142 MLDAVKMPEARKRMKMYphefSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRefNTAIIMITHD 221
|
250
....*....|....*...
gi 334185806 807 MEEAEFLCDRLGIFVDGR 824
Cdd:PRK09473 222 LGVVAGICDKVLVMYAGR 239
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
605-825 |
7.91e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 75.06 E-value: 7.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 605 STSHAIVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQG--LDI--C 680
Cdd:COG3845 1 MMPPALELRGITKRFGG------VVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpVRIrsP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 681 KD-------MdrVYtsmgvcpQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEEsLR--------SVNLfhggvaDKP 745
Cdd:COG3845 75 RDaialgigM--VH-------QHFMLVPNLTVAENIVLGLEPTKGGRLDRKAARAR-IRelseryglDVDP------DAK 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 746 AGKYSGGMKRRlsVAI--SLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVD 822
Cdd:COG3845 139 VEDLSVGEQQR--VEIlkALYRGARILILDEPTAVLTPQEADELFEILRRlAAEGKSIIFITHKLREVMAIADRVTVLRR 216
|
...
gi 334185806 823 GRL 825
Cdd:COG3845 217 GKV 219
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
634-825 |
8.17e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 75.09 E-value: 8.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKD-----MDR--VY-----TSMGVCPQHDLLWE 701
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALstaqrLARglVYlpedrQSSGLYLDAPLAWN 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 702 TLTgrehlLFYGRLKN-LKGVDLNQAVEESLRSVNL-FHGgvADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 779
Cdd:PRK15439 362 VCA-----LTHNRRGFwIKPARENAVLERYRRALNIkFNH--AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 334185806 780 DPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK15439 435 DVSARNDIYQLIRSiAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
634-837 |
1.12e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 72.46 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQG--------LDICKDMDRVYTSmgvcPQHDLLWETLtg 705
Cdd:PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGdllteenvWDIRHKIGMVFQN----PDNQFVGATV-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 rEHLLFYGrLKNlKGVDLNQAVEESLRSVNLFhgGVAD----KPAgKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 781
Cdd:PRK13650 100 -EDDVAFG-LEN-KGIPHEEMKERVNEALELV--GMQDfkerEPA-RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 782 ASRKNLWTVIKNAKR--HTAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKELKGR 837
Cdd:PRK13650 174 EGRLELIKTIKGIRDdyQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
619-844 |
1.33e-13 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 71.42 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRdgnPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQHD 697
Cdd:cd03249 10 YPSR---PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 LLWETlTGREHLLfYGRlknlkgvdlNQA----VEESLRSVNLfHGGVADKPAG----------KYSGGMKRRLSVAISL 763
Cdd:cd03249 87 VLFDG-TIAENIR-YGK---------PDAtdeeVEEAAKKANI-HDFIMSLPDGydtlvgergsQLSGGQKQRIAIARAL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTH---SMEEAeflcDRLGIFVDGRLQCIGNPKELKGRYGG 840
Cdd:cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHrlsTIRNA----DLIAVLQNGQVVEQGTHDELMAQKGV 230
|
....
gi 334185806 841 SYVL 844
Cdd:cd03249 231 YAKL 234
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
619-842 |
1.37e-13 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 71.11 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGrDGNPpkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQHD 697
Cdd:cd03251 10 YPG-DGPP---VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGLVSQDV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 LLWETlTGREHLLfYGRLknlkGVDLNQaVEESLRSVNLfHGGVADKPAG----------KYSGGMKRRLSVAISLIGNP 767
Cdd:cd03251 86 FLFND-TVAENIA-YGRP----GATREE-VEEAARAANA-HEFIMELPEGydtvigergvKLSGGQRQRIAIARALLKDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 768 KVVYMDEPSTGLDPASRKnlwtVIKNA-----KRHTAII----LTThsMEEAeflcDRLGIFVDGRLQCIGNPKELKGRy 838
Cdd:cd03251 158 PILILDEATSALDTESER----LVQAAlerlmKNRTTFViahrLST--IENA----DRIVVLEDGKIVERGTHEELLAQ- 226
|
....
gi 334185806 839 GGSY 842
Cdd:cd03251 227 GGVY 230
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
609-834 |
1.61e-13 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 73.21 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYpgrdGNPPKKAVRVL----------------------SLAVPSGECFGMLGPNGAGKTSFINMMTGLVK 666
Cdd:COG4175 3 KIEVRNLYKIF----GKRPERALKLLdqgkskdeilektgqtvgvndaSFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 667 PTSGAAFVQGLDICK-------DMDRVYTSMgVCPQHDLL-WETLtgrehllfygrLKN------LKGVDL---NQAVEE 729
Cdd:COG4175 79 PTAGEVLIDGEDITKlskkelrELRRKKMSM-VFQHFALLpHRTV-----------LENvafgleIQGVPKaerRERARE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 730 SLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPasrknlwtVIKN----------AKRHTA 799
Cdd:COG4175 147 ALELVGL--AGWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDP--------LIRRemqdellelqAKLKKT 216
|
250 260 270
....*....|....*....|....*....|....*
gi 334185806 800 IILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG4175 217 IVFITHDLDEALRLGDRIAIMKDGRIVQIGTPEEI 251
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
614-834 |
1.76e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 72.07 E-value: 1.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 614 KLRKVYPGRDGNPP--KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC-----KDMDRV 686
Cdd:PRK13643 3 KFEKVNYTYQPNSPfaSRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSstskqKEIKPV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 687 YTSMGVC---PQHDLLWETLTgrEHLLFYGRLKNLKGVDLNQAVEESLRSVNLfHGGVADKPAGKYSGGMKRRLSVAISL 763
Cdd:PRK13643 83 RKKVGVVfqfPESQLFEETVL--KDVAFGPQNFGIPKEKAEKIAAEKLEMVGL-ADEFWEKSPFELSGGQMRRVAIAGIL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSgQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
619-825 |
2.29e-13 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 69.26 E-value: 2.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRDgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDL 698
Cdd:cd03247 10 YPEQE----QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 LWETlTGREHLlfyGRlknlkgvdlnqaveeslrsvnlfhggvadkpagKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 778
Cdd:cd03247 86 LFDT-TLRNNL---GR---------------------------------RFSGGERQRLALARILLQDAPIVLLDEPTVG 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 334185806 779 LDPAS-RKNLWTVIKNAKRHTAIILTTH--SMEEAeflcDRLGIFVDGRL 825
Cdd:cd03247 129 LDPITeRQLLSLIFEVLKDKTLIWITHHltGIEHM----DKILFLENGKI 174
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
628-825 |
3.17e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 70.90 E-value: 3.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAF-----VQGLDIC--KDMDRVYTSMGVCPQH---- 696
Cdd:PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYsgdvlLGGRSIFnyRDVLEFRRRVGMLFQRpnpf 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 --DLLWETLTG-REHLLFygRLKNLKGVDLNQAVEESLRsvNLFHGGVADKPAgKYSGGMKRRLSVAISLIGNPKVVYMD 773
Cdd:PRK14271 114 pmSIMDNVLAGvRAHKLV--PRKEFRGVAQARLTEVGLW--DAVKDRLSDSPF-RLSGGQQQLLCLARTLAVNPEVLLLD 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 774 EPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK14271 189 EPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
609-834 |
3.23e-13 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 70.55 E-value: 3.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 609 AIVCDKLRKVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQglDICKDMDRvyt 688
Cdd:PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG--DITIDTAR--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGvcPQHDLLWETltgREHL--------LFYGR--LKNL-------KGVDLNQAVE---ESLRSVNLfhGGVADKPAGK 748
Cdd:PRK11264 72 SLS--QQKGLIRQL---RQHVgfvfqnfnLFPHRtvLENIiegpvivKGEPKEEATArarELLAKVGL--AGKETSYPRR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 749 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRlGIFVD-GRLQ 826
Cdd:PRK11264 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQlAQEKRTMVIVTHEMSFARDVADR-AIFMDqGRIV 223
|
....*...
gi 334185806 827 CIGNPKEL 834
Cdd:PRK11264 224 EQGPAKAL 231
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
629-834 |
3.38e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 71.19 E-value: 3.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFV------QGLDICKDMDRVYTSMGVC---PQHDLL 699
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVgdyaipANLKKIKEVKRLRKEIGLVfqfPEYQLF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 WETLtgrEHLLFYGRLkNLkGVDLNQA---VEESLRSVNLFHGGVADKPAgKYSGGMKRRLSVAISLIGNPKVVYMDEPS 776
Cdd:PRK13645 105 QETI---EKDIAFGPV-NL-GENKQEAykkVPELLKLVQLPEDYVKRSPF-ELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 777 TGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13645 179 GGLDPKGEEDFINLFErlNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
612-826 |
3.60e-13 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 69.84 E-value: 3.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 612 CDKLRKVYpgRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTS-- 689
Cdd:PRK11629 8 CDNLCKRY--QEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAElr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 ---MGVCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHGGvADKPAgKYSGGMKRRLSVAISLIGN 766
Cdd:PRK11629 86 nqkLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-NHRPS-ELSGGERQRVAIARALVNN 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIfVDGRLQ 826
Cdd:PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGelNRLQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLT 224
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
626-825 |
3.70e-13 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 70.87 E-value: 3.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 626 PPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-----------DMDRVYT-SMG-V 692
Cdd:PRK10419 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnraqrkafrrDIQMVFQdSISaV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 693 CPQHDLLWETLTGREHLLfygrlkNLKGVDLNQAVEESLRSVNLfHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:PRK10419 103 NPRKTVREIIREPLRHLL------SLDKAERLARASEMLRAVDL-DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLIL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 773 DEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK10419 176 DEAVSNLDLVLQAGVIRLLKKlqQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
619-839 |
3.98e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 73.22 E-value: 3.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRDGNPPKKAvrvLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDRVYTSMGVcpqhdl 698
Cdd:TIGR00958 488 YPNRPDVPVLKG---LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL-VQYDHHYLHRQV------ 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 lweTLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLF---HGGVADKPAGKY----------SGGMKRRLSVAISLIG 765
Cdd:TIGR00958 558 ---ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAanaHDFIMEFPNGYDtevgekgsqlSGGQKQRIAIARALVR 634
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334185806 766 NPKVVYMDEPSTGLDPASRKNLWTVIKNAKRhtAIILTTHSMEEAEfLCDRLGIFVDGRLQCIGNPKELKGRYG 839
Cdd:TIGR00958 635 KPRVLILDEATSALDAECEQLLQESRSRASR--TVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMEDQG 705
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
619-834 |
7.04e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 70.04 E-value: 7.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRDgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGL--------DICKDMDRVYTSm 690
Cdd:PRK13635 15 YPDAA----TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlseetvwDVRRQVGMVFQN- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 691 gvcPQHDLLWETLtgREHLLFygRLKNlKGVDLNQAVE---ESLRSVNL--FhggvADKPAGKYSGGMKRRLSVAISLIG 765
Cdd:PRK13635 90 ---PDNQFVGATV--QDDVAF--GLEN-IGVPREEMVErvdQALRQVGMedF----LNREPHRLSGGQKQRVAIAGVLAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 766 NPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAI--ILTTHSMEEAEFlCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13635 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGItvLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI 227
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
628-825 |
1.00e-12 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 67.46 E-value: 1.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCpqhdLLWEtltgre 707
Cdd:cd03215 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA----YVPE------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 hllfyGRLKNlkGVDLNQAVEESLRSVNLFhggvadkpagkySGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNL 787
Cdd:cd03215 83 -----DRKRE--GLVLDLSVAENIALSSLL------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143
|
170 180 190
....*....|....*....|....*....|....*....
gi 334185806 788 WTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:cd03215 144 YRLIRELADAgKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
617-825 |
1.02e-12 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 71.48 E-value: 1.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 617 KVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSG---------------AAFVQGLDIck 681
Cdd:PRK11288 12 KTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGsilidgqemrfasttAALAAGVAI-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 682 dmdrVYTSMGVCPQhdllwetLTGREHLLFyGRLKNLKG-VDLNQAVEESLRSvnLFHGGV---ADKPAGKYSGGMKRRL 757
Cdd:PRK11288 84 ----IYQELHLVPE-------MTVAENLYL-GQLPHKGGiVNRRLLNYEAREQ--LEHLGVdidPDTPLKYLSIGQRQMV 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 758 SVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEgRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
635-780 |
1.09e-12 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 71.63 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 635 SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQG------------------------------LDICKDMD 684
Cdd:COG0488 18 SLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKglrigylpqeppldddltvldtvldgdaelRALEAELE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 685 RVYTSMGvcpQHDLLWETLTGREHllfygRLKNLKGVDLNQAVEESLRSVNlFHGGVADKPAGKYSGGMKRRLSVAISLI 764
Cdd:COG0488 98 ELEAKLA---EPDEDLERLAELQE-----EFEALGGWEAEARAEEILSGLG-FPEEDLDRPVSELSGGWRRRVALARALL 168
|
170
....*....|....*.
gi 334185806 765 GNPKVVYMDEPSTGLD 780
Cdd:COG0488 169 SEPDLLLLDEPTNHLD 184
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
628-871 |
1.44e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 71.37 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGL--VKPTSGAaFVQGLDICKDMDRVYTSMGV---CPQ------- 695
Cdd:TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGR-IIYHVALCEKCGYVERPSKVgepCPVcggtlep 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 696 --------HDLLWETLTGREHLLF------YGR---LKNL---------KGVDLNQAVEESLRSVNLFHGgvADKPAGKY 749
Cdd:TIGR03269 92 eevdfwnlSDKLRRRIRKRIAIMLqrtfalYGDdtvLDNVlealeeigyEGKEAVGRAVDLIEMVQLSHR--ITHIARDL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 750 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRLQC 827
Cdd:TIGR03269 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIsmVLTSHWPEVIEDLSDKAIWLENGEIKE 249
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 334185806 828 IGNPKELKGRYggsyvltMTTSSEHEKDVEMLVQE---VSPNVKKIY 871
Cdd:TIGR03269 250 EGTPDEVVAVF-------MEGVSEVEKECEVEVGEpiiKVRNVSKRY 289
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
634-805 |
1.55e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 67.28 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREHLLFyg 713
Cdd:PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLY-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 714 rlkNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK- 792
Cdd:PRK13540 98 ---DIHFSPGAVGITELCRLFSLEH--LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQe 172
|
170
....*....|...
gi 334185806 793 NAKRHTAIILTTH 805
Cdd:PRK13540 173 HRAKGGAVLLTSH 185
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
621-824 |
1.64e-12 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 67.49 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 621 GRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldickdmdrvytSMGVCPQHD-LL 699
Cdd:cd03250 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEPwIQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 WETLtgREHLLF--------YGR----------LKNLKGVDLNQAVEeslRSVNLfhggvadkpagkySGGMKRRLSVAI 761
Cdd:cd03250 79 NGTI--RENILFgkpfdeerYEKvikacalepdLEILPDGDLTEIGE---KGINL-------------SGGQKQRISLAR 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 762 SLIGNPKVVYMDEPSTGLDPASRKNLWT--VIKNAKRHTAIILTTHSMeeaEFL--CDRLGIFVDGR 824
Cdd:cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNKTRILVTHQL---QLLphADQIVVLDNGR 204
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
628-824 |
3.47e-12 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 67.80 E-value: 3.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI--------CKDMDRVY--TSMGVCPqhd 697
Cdd:COG1101 19 KRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVtklpeykrAKYIGRVFqdPMMGTAP--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 llweTLTGREHL-LFY--GRLKNLK-GVDLNQAVE--ESLRSVNLfhgGVADK---PAGKYSGGMKRRLSVAISLIGNPK 768
Cdd:COG1101 96 ----SMTIEENLaLAYrrGKRRGLRrGLTKKRRELfrELLATLGL---GLENRldtKVGLLSGGQRQALSLLMATLTKPK 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:COG1101 169 LLLLDEHTAALDPKTAALVLELTEKivEENNLTTLMVTHNMEQALDYGNRLIMMHEGR 226
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
635-834 |
3.55e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 66.91 E-value: 3.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 635 SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldickdMDRVYTSMGVCP-----QHDLLWETLTGREHL 709
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG------QDHTTTPPSRRPvsmlfQENNLFSHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFyGRLKNLKgvdLNQAVEESLRSV--NLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNL 787
Cdd:PRK10771 93 GL-GLNPGLK---LNAAQREKLHAIarQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 334185806 788 WTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK10771 169 LTLVSQvcQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
615-824 |
4.34e-12 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 67.26 E-value: 4.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDicKDMDRVY------- 687
Cdd:PRK11701 12 LTKLYGPR------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD--GQLRDLYalseaer 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 688 -----TSMGVCPQH--DLL----------WETL--TGREHllfYGRLKnlkgvdlnQAVEESLRSVNLFHGGVADKPAgK 748
Cdd:PRK11701 84 rrllrTEWGFVHQHprDGLrmqvsaggniGERLmaVGARH---YGDIR--------ATAGDWLERVEIDAARIDDLPT-T 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 749 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKR--HTAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRelGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
641-831 |
4.51e-12 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 67.05 E-value: 4.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 641 GECFGMLGPNGAGKTSFINMMTGLVKPTSGaafvqglDICKDMDRV-YTSMGVCPQH-----DLLWETLTGREHLLFYgR 714
Cdd:cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEG-------DIEIELDTVsYKPQYIKADYegtvrDLLSSITKDFYTHPYF-K 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 715 LKNLKGVDLNQAVEESLRSVnlfhggvadkpagkySGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK-- 792
Cdd:cd03237 97 TEIAKPLQIEQILDREVPEL---------------SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRrf 161
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 334185806 793 --NAKRhTAIILtTHSMEEAEFLCDRLGIFvDGR--LQCIGNP 831
Cdd:cd03237 162 aeNNEK-TAFVV-EHDIIMIDYLADRLIVF-EGEpsVNGVANP 201
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
634-834 |
6.91e-12 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 66.93 E-value: 6.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDR-VYTSMGVCPQH-----DLLWETLTGR- 706
Cdd:PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKeVARRIGLLAQNattpgDITVQELVARg 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 707 --EHLLFYGRLKNlkgvDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:PRK10253 106 ryPHQPLFTRWRK----EDEEAVTKAMQATGITH--LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 785 KNLWTVIKNAKRHTAIILTT--HSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK10253 180 IDLLELLSELNREKGYTLAAvlHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
629-824 |
7.57e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 68.70 E-value: 7.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGlVKPT---SGAAFVQGLDICKDMDRVYTSMGVCPQHD--LLWETL 703
Cdd:TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGSPLKASNIRDTERAGIVIIHQelTLVPEL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 704 TGREHlLFYGRLKNLKGVDLNQAV-----EESLRSVNLFHGGVAdKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 778
Cdd:TIGR02633 94 SVAEN-IFLGNEITLPGGRMAYNAmylraKNLLRELQLDADNVT-RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSS 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 334185806 779 LDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:TIGR02633 172 LTEKETEILLDIIRDLKAHgVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
635-833 |
1.04e-11 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 66.33 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 635 SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDRvytSMGVCPQHdllwETLT------ 704
Cdd:PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdwspAELAR---RRAVLPQH----SSLSfpftve 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 705 -----GREHLlfygrlkNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLI------GNPKVVYMD 773
Cdd:PRK13548 95 evvamGRAPH-------GLSRAEDDALVAAALAQVDLAH--LAGRDYPQLSGGEQQRVQLARVLAqlwepdGPPRWLLLD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 774 EPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:PRK13548 166 EPTSALDLAHQHHVLRLARQlaHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
622-824 |
1.22e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 64.98 E-value: 1.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 622 RDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPT---SGAAFVQGLDIcKDMDRVYTSMGV-CPQHD 697
Cdd:cd03233 14 GKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPY-KEFAEKYPGEIIyVSEED 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 LLWETLTGREHLLFYGRLKNlkgvdlnqavEESLRSVnlfhggvadkpagkySGGMKRRLSVAISLIGNPKVVYMDEPST 777
Cdd:cd03233 93 VHFPTLTVRETLDFALRCKG----------NEFVRGI---------------SGGERKRVSIAEALVSRASVLCWDNSTR 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 334185806 778 GLDPASRKNLWTVIK---NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:cd03233 148 GLDSSTALEILKCIRtmaDVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
632-832 |
2.48e-11 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 64.75 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 632 RVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQ-GLDIckdmdrvytsmGVCPQHDLLWETLTgre 707
Cdd:PRK09544 18 RVLsdvSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNgKLRI-----------GYVPQKLYLDTTLP--- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 hlLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNL 787
Cdd:PRK09544 84 --LTVNRFLRLRPGTKKEDILPALKRVQAGH--LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334185806 788 WTVIKNAKR--HTAIILTTHSM-----EEAEFLCdrlgifVDGRLQCIGNPK 832
Cdd:PRK09544 160 YDLIDQLRRelDCAVLMVSHDLhlvmaKTDEVLC------LNHHICCSGTPE 205
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
628-817 |
2.50e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 67.83 E-value: 2.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVL----SLAVPSGECFGMLGPNGAGKTSFINMM-----TGLVkpTSGAAFVQGLDICKDMDRvytSMGVCPQHDL 698
Cdd:TIGR00956 772 KKEKRVIlnnvDGWVKPGTLTALMGASGAGKTTLLNVLaervtTGVI--TGGDRLVNGRPLDSSFQR---SIGYVQQQDL 846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 LWETLTGREHLLFYGRLKNLKGVDL---NQAVEESLRSVNLfhGGVADKPAGKYSGGM----KRRLSVAISLIGNPK-VV 770
Cdd:TIGR00956 847 HLPTSTVRESLRFSAYLRQPKSVSKsekMEYVEEVIKLLEM--ESYADAVVGVPGEGLnveqRKRLTIGVELVAKPKlLL 924
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 334185806 771 YMDEPSTGLDPASRknlWTVI----KNAKRHTAIILTTH---SMEEAEFlcDRL 817
Cdd:TIGR00956 925 FLDEPTSGLDSQTA---WSICklmrKLADHGQAILCTIHqpsAILFEEF--DRL 973
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
634-835 |
2.58e-11 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 65.17 E-value: 2.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTS---MGVCPQHDLLWETLTGREHL 709
Cdd:PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAmSRSRLYTVrkrMSMLFQSGALFTDMNVFDNV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFYGR-LKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLW 788
Cdd:PRK11831 106 AYPLReHTQLPAPLLHSTVMMKLEAVGL--RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLV 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 334185806 789 TVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELK 835
Cdd:PRK11831 184 KLISelNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
634-834 |
2.75e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 65.11 E-value: 2.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDI-CKDMDRVYTSMGVCPQH-DLLWETLTGREHLLF 711
Cdd:PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLtAENVWNLRRKIGMVFQNpDNQFVGATVEDDVAF 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 712 YGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVI 791
Cdd:PRK13642 106 GMENQGIPREEMIKRVDEALLAVNMLD--FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 334185806 792 KNAKR--HTAIILTTHSMEEAEFlCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13642 184 HEIKEkyQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
615-834 |
2.80e-11 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 66.21 E-value: 2.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRDGNPPKKAVrvlSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldicKDMDRVYTS---MG 691
Cdd:PRK11000 6 LRNVTKAYGDVVISKDI---NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE----KRMNDVPPAergVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 692 VCPQHDLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVY 771
Cdd:PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 772 MDEPSTGLDPASRKNLWTVIknAKRH----TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK11000 157 LDEPLSNLDAALRVQMRIEI--SRLHkrlgRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
613-839 |
3.08e-11 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 66.84 E-value: 3.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 613 DKLRKVYPGRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAafvqgLDICKDMDRVYTSMGV 692
Cdd:PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT-----VDIKGSAALIAISSGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 693 CPQhdllwetLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:PRK13545 97 NGQ-------LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADI--GKFIYQPVKTYSSGMKSRLGFAISVHINPDILVI 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 773 DEP-STGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYG 839
Cdd:PRK13545 168 DEAlSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
646-805 |
3.82e-11 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 63.03 E-value: 3.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 646 MLGPNGAGKTSFINMM-----TGLVKptsGAAFVQGLDICKDMDRvytSMGVCPQHDLLWETLTGREHLLFYGrlkNLKG 720
Cdd:cd03232 38 LMGESGAGKTTLLDVLagrktAGVIT---GEILINGRPLDKNFQR---STGYVEQQDVHSPNLTVREALRFSA---LLRG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 721 VDLNQaveeslrsvnlfhggvadkpagkysggmKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTA 799
Cdd:cd03232 109 LSVEQ----------------------------RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKlADSGQA 160
|
....*.
gi 334185806 800 IILTTH 805
Cdd:cd03232 161 ILCTIH 166
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
605-834 |
4.74e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 64.44 E-value: 4.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 605 STSHAIVCDKLRKVYPgrdgNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSgaafvqgldickDMD 684
Cdd:PRK13640 1 MKDNIVEFKHVSFTYP----DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD------------NPN 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 685 RVYTSMGVCPQHDLLWETltgREH--LLFYGRLKNLKGVDL---------NQAV--EESLRSVN--LFHGGVAD----KP 745
Cdd:PRK13640 65 SKITVDGITLTAKTVWDI---REKvgIVFQNPDNQFVGATVgddvafgleNRAVprPEMIKIVRdvLADVGMLDyidsEP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 746 AgKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEfLCDRLGIFVDG 823
Cdd:PRK13640 142 A-NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKlkKKNNLTVISITHDIDEAN-MADQVLVLDDG 219
|
250
....*....|.
gi 334185806 824 RLQCIGNPKEL 834
Cdd:PRK13640 220 KLLAQGSPVEI 230
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
630-834 |
5.75e-11 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 63.54 E-value: 5.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKP----TSG----------AAFVQGLDICKDMDRVYTSMG-VCP 694
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGeilldgrpllPLSIRGRHIATIMQNPRTAFNpLFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 695 QHDLLWETLtgREHLLFYgrlknlkgvdlNQAVE---ESLRSVNLFHGG-VADKPAGKYSGGMKRRLSVAISLIGNPKVV 770
Cdd:TIGR02770 81 MGNHAIETL--RSLGKLS-----------KQARAlilEALEAVGLPDPEeVLKKYPFQLSGGMLQRVMIALALLLEPPFL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 771 YMDEPSTGLDPASRKN-LWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:TIGR02770 148 IADEPTTDLDVVNQARvLKLLRELRQLFgTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
630-817 |
9.54e-11 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 62.84 E-value: 9.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFV----QGLDICKDMDRVY-----TSMGVCPQH---- 696
Cdd:COG4778 26 VLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhdgGWVDLAQASPREIlalrrRTIGYVSQFlrvi 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 ------DLLWETLtgREHllfygrlknlkGVDLNQA---VEESLRSVNLfHGGVADKPAGKYSGGMKRRLSVAISLIGNP 767
Cdd:COG4778 106 prvsalDVVAEPL--LER-----------GVDREEArarARELLARLNL-PERLWDLPPATFSGGEQQRVNIARGFIADP 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 334185806 768 KVVYMDEPSTGLDPASRKNLWTVIKNAK-RHTAIILTTHSMEEAEFLCDRL 817
Cdd:COG4778 172 PLLLLDEPTASLDAANRAVVVELIEEAKaRGTAIIGIFHDEEVREAVADRV 222
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
633-805 |
1.20e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 65.29 E-value: 1.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 633 VLSLAVPsGECFGMLGPNGAGKTSFINMMTGLVKPTS--GAAFVQGLDICKdmdRVYTSMGVCPQHDLLWETLTGREHLL 710
Cdd:PLN03211 87 VTGMASP-GEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTK---QILKRTGFVTQDDILYPHLTVRETLV 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 711 FYG--RLKNLKGVDLNQAVEESLRSV------------NLFHGGVadkpagkySGGMKRRLSVAISLIGNPKVVYMDEPS 776
Cdd:PLN03211 163 FCSllRLPKSLTKQEKILVAESVISElgltkcentiigNSFIRGI--------SGGERKRVSIAHEMLINPSLLILDEPT 234
|
170 180 190
....*....|....*....|....*....|
gi 334185806 777 TGLDP-ASRKNLWTVIKNAKRHTAIILTTH 805
Cdd:PLN03211 235 SGLDAtAAYRLVLTLGSLAQKGKTIVTSMH 264
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
619-811 |
1.39e-10 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 62.10 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRdgnPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDRVYTSMGVcpqhdl 698
Cdd:cd03248 21 YPTR---PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI-SQYEHKYLHSKV------ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 lweTLTGREHLLFYGRLKN-----LKGVDLNQAVEESLRS-----VNLFHGGV---ADKPAGKYSGGMKRRLSVAISLIG 765
Cdd:cd03248 91 ---SLVGQEPVLFARSLQDniaygLQSCSFECVKEAAQKAhahsfISELASGYdteVGEKGSQLSGGQKQRVAIARALIR 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 334185806 766 NPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAE 811
Cdd:cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
634-810 |
1.39e-10 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 62.72 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGA--------AFVQGLDIcKDMDRVYTSMGVCPQHDLLWETLTG 705
Cdd:COG4161 21 INLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQlniaghqfDFSQKPSE-KAIRLLRQKVGMVFQQYNLWPHLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 REHLLfYGRLKNLkGVDLNQAVEESLRSVNLFhgGVADKpAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 781
Cdd:COG4161 100 MENLI-EAPCKVL-GLSKEQAREKAMKLLARL--RLTDK-ADRFplhlSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
|
170 180 190
....*....|....*....|....*....|.
gi 334185806 782 ASRKNLWTVIKNAKrHTAI--ILTTHSMEEA 810
Cdd:COG4161 175 EITAQVVEIIRELS-QTGItqVIVTHEVEFA 204
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
634-834 |
1.51e-10 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 62.39 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGL--VKPTSGAAFVQGLDIcKDMD---RVYTSMGVCPQH----------DL 698
Cdd:COG0396 19 VNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHpkYEVTSGSILLDGEDI-LELSpdeRARAGIFLAFQYpveipgvsvsNF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 LWETLTGRehllfygRLKNLKGVDLNQAVEESLRSVNL---FhggvADKPA-GKYSGGMKRRLSVAISLIGNPKVVYMDE 774
Cdd:COG0396 98 LRTALNAR-------RGEELSAREFLKLLKEKMKELGLdedF----LDRYVnEGFSGGEKKRNEILQMLLLEPKLAILDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 775 PSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSmeeAEFL----CDRLGIFVDGRLQCIGnPKEL 834
Cdd:COG0396 167 TDSGLDIDALRIVAEGVNKlRSPDRGILIITHY---QRILdyikPDFVHVLVDGRIVKSG-GKEL 227
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
610-825 |
1.64e-10 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 62.77 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVqgldickdmdrvyts 689
Cdd:PRK11247 13 LLLNAVSKRYGER------TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA--------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 mGVCPQHDLLWETltgreHLLFY-GRLKNLKGV----------DLNQAVEESLRSVnlfhgGVADK----PAGkYSGGMK 754
Cdd:PRK11247 72 -GTAPLAEAREDT-----RLMFQdARLLPWKKVidnvglglkgQWRDAALQALAAV-----GLADRanewPAA-LSGGQK 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 755 RRLSVAISLIGNPKVVYMDEPSTGLDPASR-------KNLWTviknaKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK11247 140 QRVALARALIHRPGLLLLDEPLGALDALTRiemqdliESLWQ-----QHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
629-832 |
1.81e-10 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 62.72 E-value: 1.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVK----PTS-----GAAFVQGLDICKDMDRVYTSMGVCPQHDLL 699
Cdd:PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksAGShiellGRTVQREGRLARDIRKSRANTGYIFQQFNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 WETLTGREHLL--------FYGRLKNLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVY 771
Cdd:PRK09984 98 VNRLSVLENVLigalgstpFWRTCFSWFTREQKQRALQALTRVGMVH--FAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 772 MDEPSTGLDPASRKNLWTVIKNAKRHTAI--ILTTHSMEEAEFLCDRL------GIFVDGRLQCIGNPK 832
Cdd:PRK09984 176 ADEPIASLDPESARIVMDTLRDINQNDGItvVVTLHQVDYALRYCERIvalrqgHVFYDGSSQQFDNER 244
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
610-805 |
2.31e-10 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 59.38 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYPGRdgnppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGaafvqgldICKDMDRVYts 689
Cdd:cd03221 1 IELENLSKTYGGK------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG--------IVTWGSTVK-- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 690 MGVCPQhdllwetltgrehllfygrlknlkgvdlnqaveeslrsvnlfhggvadkpagkYSGGMKRRLSVAISLIGNPKV 769
Cdd:cd03221 65 IGYFEQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNL 91
|
170 180 190
....*....|....*....|....*....|....*.
gi 334185806 770 VYMDEPSTGLDPASRKNLWTVIKNAKRhtAIILTTH 805
Cdd:cd03221 92 LLLDEPTNHLDLESIEALEEALKEYPG--TVILVSH 125
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
629-825 |
3.83e-10 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 61.05 E-value: 3.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVY-TSMGVCPQHDLLWETLTGR 706
Cdd:PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDwQTAKIMrEAVAIVPEGRRVFSRMTVE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 707 EHLLFYGRLknlkgVDLNQAVEESLRSVNLF---HGGVADKpAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 783
Cdd:PRK11614 99 ENLAMGGFF-----AERDQFQERIKWVYELFprlHERRIQR-AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 334185806 784 RKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK11614 173 IQQIFDTIEQLREQgMTIFLVEQNANQALKLADRGYVLENGHV 215
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
622-831 |
4.42e-10 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 60.59 E-value: 4.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 622 RDGNPPkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQhdllw 700
Cdd:cd03244 13 RPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRISIIPQ----- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 701 etltgrEHLLFYGRL-KNLkgvD---------LNQAVEE-SLRSVnlfhggVADKPAGK----------YSGGMKRRLSV 759
Cdd:cd03244 86 ------DPVLFSGTIrSNL---DpfgeysdeeLWQALERvGLKEF------VESLPGGLdtvveeggenLSVGQRQLLCL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 760 AISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHS----MEeaeflCDRLGIFVDGRLQCIGNP 831
Cdd:cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRldtiID-----SDRILVLDKGRVVEFDSP 221
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
646-834 |
5.03e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 61.79 E-value: 5.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 646 MLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTGREHLLF----YGRLKN---- 717
Cdd:PRK13631 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFqfpeYQLFKDtiek 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 718 ---LKGVDLNQAVEESLRSVNLFHGGVA------DKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLW 788
Cdd:PRK13631 137 dimFGPVALGVKKSEAKKLAKFYLNKMGlddsylERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM 216
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 334185806 789 TVIKNAKRHT-AIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK13631 217 QLILDAKANNkTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
628-820 |
6.53e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 60.82 E-value: 6.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFI------NMMTGLVKPTSGAAFVqGLDICK---DMDRV--YTSMgVCPQH 696
Cdd:PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLkclnrmNELESEVRVEGRVEFF-NQNIYErrvNLNRLrrQVSM-VHPKP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 DLLweTLTGREHLLFYGRLKNLK-GVDLNQAVEESLRSVNLFH--GGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMD 773
Cdd:PRK14258 98 NLF--PMSVYDNVAYGVKIVGWRpKLEIDDIVESALKDADLWDeiKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 334185806 774 EPSTGLDPASRKNLWTVIKNAKRHT--AIILTTHSMEEAEFLCDRLGIF 820
Cdd:PRK14258 176 EPCFGLDPIASMKVESLIQSLRLRSelTMVIVSHNLHQVSRLSDFTAFF 224
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
634-834 |
6.82e-10 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 60.96 E-value: 6.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYT-SMGVCPQHDLLWETLTGREhLLFY 712
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFArKVAYLPQQLPAAEGMTVRE-LVAI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 713 GR------LKNLkGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKN 786
Cdd:PRK10575 109 GRypwhgaLGRF-GAADREKVEEAISLVGL--KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 334185806 787 LWTVIK--NAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK10575 186 VLALVHrlSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
630-838 |
8.03e-10 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 60.60 E-value: 8.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldickDMDRVYTSMGVCPQhdllwetLTGREHL 709
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAISAGLSGQ-------LTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEP-STGLDPASRKNLW 788
Cdd:PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSEL--GEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAlSVGDQTFAQKCLD 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 334185806 789 TVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRY 838
Cdd:PRK13546 185 KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
629-825 |
1.08e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 60.87 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGA------------------AFVQGLDICKDMDR----- 685
Cdd:PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTiewifkdeknkkktkekeKVLEKLVIQKTRFKkikki 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 --VYTSMGVCPQ---HDLLWETLtgrEHLLFYGRLKnlKGVDLNQAVEESLRSVNLFhgGVA----DKPAGKYSGGMKRR 756
Cdd:PRK13651 101 keIRRRVGVVFQfaeYQLFEQTI---EKDIIFGPVS--MGVSKEEAKKRAAKYIELV--GLDesylQRSPFELSGGQKRR 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 757 LSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNA-KRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK13651 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLnKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
630-838 |
1.13e-09 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 59.81 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQhdllwetltgrEH 708
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGVVLQ-----------EN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 709 LLFYGRLK-NLKGVDLNQAVEESLRSVNLF--HGGVADKPAG----------KYSGGMKRRLSVAISLIGNPKVVYMDEP 775
Cdd:cd03252 86 VLFNRSIRdNIALADPGMSMERVIEAAKLAgaHDFISELPEGydtivgeqgaGLSGGQRQRIAIARALIHNPRILIFDEA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 776 STGLDPASRKNlwtVIKNAKR----HTAIILtTHSMEEAEfLCDRLGIFVDGRLQCIGNPKEL---KGRY 838
Cdd:cd03252 166 TSALDYESEHA---IMRNMHDicagRTVIII-AHRLSTVK-NADRIIVMEKGRIVEQGSHDELlaeNGLY 230
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
634-810 |
1.73e-09 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 59.26 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAA--------FVQGLDIcKDMDRVYTSMGVCPQHDLLWETLTG 705
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLniagnhfdFSKTPSD-KAIRELRRNVGMVFQQYNLWPHLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 REHLLfYGRLKNLkGVDLNQAVEESLRSVNLFHggVADKpAGKY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 781
Cdd:PRK11124 100 QQNLI-EAPCRVL-GLSKDQALARAEKLLERLR--LKPY-ADRFplhlSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
|
170 180 190
....*....|....*....|....*....|.
gi 334185806 782 ASRKNLWTVIKNAkRHTAI--ILTTHSMEEA 810
Cdd:PRK11124 175 EITAQIVSIIREL-AETGItqVIVTHEVEVA 204
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
570-826 |
1.73e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 61.38 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 570 ISHSLQkQVSAISvemEKLDVIHESEKVAQLMLESSTSHAI----VCDKLRKVYPGRDG------------------NPP 627
Cdd:TIGR02633 197 ISHKLN-EVKAVC---DTICVIRDGQHVATKDMSTMSEDDIitmmVGREITSLYPHEPHeigdvilearnltcwdviNPH 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGlVKPT--SGAAFVQG--LDI--CKDMDRVYTSM--------GVC 693
Cdd:TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGkfEGNVFINGkpVDIrnPAQAIRAGIAMvpedrkrhGIV 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 694 PQ----HDLlweTLTGREHLLFYGRLKNLKGVdlnQAVEESLR--SVNLFHggvADKPAGKYSGGMKRRLSVAISLIGNP 767
Cdd:TIGR02633 352 PIlgvgKNI---TLSVLKSFCFKMRIDAAAEL---QIIGSAIQrlKVKTAS---PFLPIGRLSGGNQQKAVLAKMLLTNP 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 768 KVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQ 826
Cdd:TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQlAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
629-831 |
1.93e-09 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 58.58 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQhdllwetltgrE 707
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTiPLEDLRSSLTIIPQ-----------D 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 HLLFYGRLK-NLKGVDlNQAVEESLRSVNLFHGGVadkpagKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKN 786
Cdd:cd03369 91 PTLFSGTIRsNLDPFD-EYSDEEIYGALRVSEGGL------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 334185806 787 LWTVIKNAKRHTAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNP 831
Cdd:cd03369 164 IQKTIREEFTNSTILTIAHRLRTI-IDYDKILVMDAGEVKEYDHP 207
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
606-815 |
1.98e-09 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 59.51 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 606 TSHAIVCDKLRKVYpgRDGNppkKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDR 685
Cdd:PRK15056 3 QQAGIVVNDVTVTW--RNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 vyTSMGVCPQ-HDLLWETLTGREHLLFYGR------LKNLKGVDlNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLS 758
Cdd:PRK15056 78 --NLVAYVPQsEEVDWSFPVLVEDVVMMGRyghmgwLRRAKKRD-RQIVTAALARVDMVE--FRHRQIGELSGGQKKRVF 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 759 VAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIIL-TTHSMEEAEFLCD 815
Cdd:PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLvSTHNLGSVTEFCD 210
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
634-833 |
2.05e-09 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 59.36 E-value: 2.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK----DMDRVytsMGVCPQHDLLWETLTGREHL 709
Cdd:COG4559 20 VSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAwspwELARR---RAVLPQHSSLAFPFTVEEVV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFyGRLKN-LKGVDLNQAVEESLRSVNLfhGGVADKPagkY---SGGMKRRLSVAISLI-------GNPKVVYMDEPSTG 778
Cdd:COG4559 97 AL-GRAPHgSSAAQDRQIVREALALVGL--AHLAGRS---YqtlSGGEQQRVQLARVLAqlwepvdGGPRWLFLDEPTSA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 779 LDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKE 833
Cdd:COG4559 171 LDLAHQHAVLRLARQlARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEE 226
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
615-803 |
2.12e-09 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 61.28 E-value: 2.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGRDGnppkkAVRVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDRvytsmg 691
Cdd:PRK10535 10 IRRSYPSGEE-----QVEVLkgiSLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDV-ATLDA------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 692 vcpqhDLLweTLTGREHLLF-YGRLKNLKGVDLNQAVE------------ESLRSVNLFHG-GVADK---PAGKYSGGMK 754
Cdd:PRK10535 78 -----DAL--AQLRREHFGFiFQRYHLLSHLTAAQNVEvpavyaglerkqRLLRAQELLQRlGLEDRveyQPSQLSGGQQ 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 334185806 755 RRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILT 803
Cdd:PRK10535 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHqlRDRGHTVIIVT 201
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
634-780 |
2.37e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 61.10 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGA---------AFV-QGLDickDMDrvytsmgvcPQHDlLWETL 703
Cdd:TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTieigetvklAYVdQSRD---ALD---------PNKT-VWEEI 407
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185806 704 T-GREHLlfygrlkNLKGVDLNQavEESLRSVNlFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 780
Cdd:TIGR03719 408 SgGLDII-------KLGKREIPS--RAYVGRFN-FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
634-809 |
4.72e-09 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 57.80 E-value: 4.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVY-TSMGVCPQHDLLW-ETLtgREHLLF 711
Cdd:PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYrQQVSYCAQTPTLFgDTV--YDNLIF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 712 YGRLKnlkgvdlNQAVEESLRSVNLFHGGVAD----KPAGKYSGGMKRRlsvaISLIGN----PKVVYMDEPSTGLDPAS 783
Cdd:PRK10247 104 PWQIR-------NQQPDPAIFLDDLERFALPDtiltKNIAELSGGEKQR----ISLIRNlqfmPKVLLLDEITSALDESN 172
|
170 180
....*....|....*....|....*...
gi 334185806 784 RKNLWTVIK--NAKRHTAIILTTHSMEE 809
Cdd:PRK10247 173 KHNVNEIIHryVREQNIAVLWVTHDKDE 200
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
628-834 |
5.67e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 59.80 E-value: 5.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC--KDMDRVYTSMGvcpqhdllWETLTG 705
Cdd:PRK09700 276 RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprSPLDAVKKGMA--------YITESR 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 REHLLFygrlKNLKgVDLNQAVEESLR------SVNLFHGGVADKPA------------------GKYSGGMKRRLSVAI 761
Cdd:PRK09700 348 RDNGFF----PNFS-IAQNMAISRSLKdggykgAMGLFHEVDEQRTAenqrellalkchsvnqniTELSGGNQQKVLISK 422
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 762 SLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL-QCIGNPKEL 834
Cdd:PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQlADDGKVILMVSSELPEIITVCDRIAVFCEGRLtQILTNRDDM 497
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
630-823 |
1.21e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 58.52 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVL---SLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGV--CPQHDLLWETLT 704
Cdd:PRK15439 23 GVEVLkgiDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIylVPQEPLLFPNLS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 705 GREHLLF--------YGRLKNL---KGVDLNQAVEESLRSvnlfhggVADkpagkysggmkrRLSVAI--SLIGNPKVVY 771
Cdd:PRK15439 103 VKENILFglpkrqasMQKMKQLlaaLGCQLDLDSSAGSLE-------VAD------------RQIVEIlrGLMRDSRILI 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 334185806 772 MDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDG 823
Cdd:PRK15439 164 LDEPTASLTPAETERLFSRIRElLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
635-834 |
1.35e-08 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 56.73 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 635 SLAVPSGECFGMLGPNGAGKTSF---INMmtgLVKPTSGAAFVQGLDI--------------CKDMDRVYTSMGVCPQHD 697
Cdd:COG4598 28 SLTARKGDVISIIGSSGSGKSTFlrcINL---LETPDSGEIRVGGEEIrlkpdrdgelvpadRRQLQRIRTRLGMVFQSF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 LLWETLTGRE-------HLLfygrlknlkGVDLNQAVEES---LRSVnlfhgGVADKpAGKY----SGGMKRRLSVAISL 763
Cdd:COG4598 105 NLWSHMTVLEnvieapvHVL---------GRPKAEAIERAealLAKV-----GLADK-RDAYpahlSGGQQQRAAIARAL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLgIFVD-GRLQCIGNPKEL 834
Cdd:COG4598 170 AMEPEVMLFDEPTSALDPELVGEVLKVMRDlAEEGRTMLVVTHEMGFARDVSSHV-VFLHqGRIEEQGPPAEV 241
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
701-808 |
2.80e-08 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 56.63 E-value: 2.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 701 ETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLFH---GGVADKPAGKYSGGMKRRLSVAISLI---GNPKVVYMDE 774
Cdd:pfam13304 186 QRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLILlenGGGGELPAFELSDGTKRLLALLAALLsalPKGGLLLIDE 265
|
90 100 110
....*....|....*....|....*....|....*
gi 334185806 775 PSTGLDPASRKNLWTVIKNAKRHTA-IILTTHSME 808
Cdd:pfam13304 266 PESGLHPKLLRRLLELLKELSRNGAqLILTTHSPL 300
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
610-834 |
3.60e-08 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 55.47 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 610 IVCDKLRKVYpgrdGNppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVY-T 688
Cdd:COG4604 2 IEIKNVSKRY----GG--KVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELaK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 689 SMGVCPQHDLLWETLTGREhLLFYGRLKNLKG---VDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIG 765
Cdd:COG4604 76 RLAILRQENHINSRLTVRE-LVAFGRFPYSKGrltAEDREIIDEAIAYLDL--EDLADRYLDELSGGQRQRAFIAMVLAQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 766 NPKVVYMDEPSTGLDPASRKNLWTVIKNA--KRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG4604 153 DTDYVLLDEPLNNLDMKHSVQMMKLLRRLadELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEI 223
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
613-783 |
4.23e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 56.87 E-value: 4.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 613 DKLRKVYPgrdgnPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQ-GLDIckdmdrvytsmG 691
Cdd:TIGR03719 8 NRVSKVVP-----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQpGIKV-----------G 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 692 VCPQHDLLWETLTGREHL------------------------------LF--YGRLKNL----KGVDLNQAVEESLRSVN 735
Cdd:TIGR03719 72 YLPQEPQLDPTKTVRENVeegvaeikdaldrfneisakyaepdadfdkLAaeQAELQEIidaaDAWDLDSQLEIAMDALR 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 334185806 736 LFHGgvaDKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 783
Cdd:TIGR03719 152 CPPW---DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
591-825 |
5.29e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 56.55 E-value: 5.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 591 IHESEkVAQLMlESSTSHAIVCDKLRKVYPGRDGNPPKKAVRVLSLAVP----------SGECFGMLGPNGAGKTSFINM 660
Cdd:PRK10762 220 IAERE-VADLT-EDSLIEMMVGRKLEDQYPRLDKAPGEVRLKVDNLSGPgvndvsftlrKGEILGVSGLMGAGRTELMKV 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 661 MTGLVKPTSGAAFVQGLDICKDMDR-------VYTS---------MGVCPQHDLlweTLTGREHLL-FYGRLKNlkgVDL 723
Cdd:PRK10762 298 LYGALPRTSGYVTLDGHEVVTRSPQdglangiVYISedrkrdglvLGMSVKENM---SLTALRYFSrAGGSLKH---ADE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 724 NQAVEESLRSVNLfHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIIL 802
Cdd:PRK10762 372 QQAVSDFIRLFNI-KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEgLSIIL 450
|
250 260
....*....|....*....|...
gi 334185806 803 TTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK10762 451 VSSEMPEVLGMSDRILVMHEGRI 473
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
638-820 |
5.70e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 53.73 E-value: 5.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 638 VPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAfvqgldickDMDRVYTSmgVCPQHdllwetltgrehllfygrlkn 717
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND---------EWDGITPV--YKPQY--------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 718 lkgVDLnqaveeslrsvnlfhggvadkpagkySGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH 797
Cdd:cd03222 70 ---IDL--------------------------SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE 120
|
170 180
....*....|....*....|....*
gi 334185806 798 T--AIILTTHSMEEAEFLCDRLGIF 820
Cdd:cd03222 121 GkkTALVVEHDLAVLDYLSDRIHVF 145
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
615-834 |
6.67e-08 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 55.62 E-value: 6.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 615 LRKVYPGrdGNPpkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGaafvqglDICKDmDRVYTSMGvcP 694
Cdd:PRK11650 9 VRKSYDG--KTQ---VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG-------EIWIG-GRVVNELE--P 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 695 ---------QHDLLWETLTGREHLLfYGrLKNlKGVD---LNQAVEESLRSVNLfhGGVAD-KPAgKYSGGMKRRLSVAI 761
Cdd:PRK11650 74 adrdiamvfQNYALYPHMSVRENMA-YG-LKI-RGMPkaeIEERVAEAARILEL--EPLLDrKPR-ELSGGQRQRVAMGR 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 762 SLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKR--HTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRrlKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
634-825 |
7.16e-08 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 56.39 E-value: 7.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVkPTSGAAFVQGLDIcKDMDrvytsMGVCPQHdLLWetlTGREHLLFYG 713
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIEL-RELD-----PESWRKH-LSW---VGQNPQLPHG 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 714 RLK--------NLKGVDLNQAVEESlrSVNLF-----HG---GVADKPAGkYSGGMKRRLSVAISLIGNPKVVYMDEPST 777
Cdd:PRK11174 438 TLRdnvllgnpDASDEQLQQALENA--WVSEFlpllpQGldtPIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTA 514
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 334185806 778 GLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEfLCDRLGIFVDGRL 825
Cdd:PRK11174 515 SLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQI 561
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
622-866 |
8.53e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 56.52 E-value: 8.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 622 RDGNPPkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK----DMDRVytsMGVCPQHD 697
Cdd:PLN03232 1245 RPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfgltDLRRV---LSIIPQSP 1319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 698 LLWETlTGREHLLFY------GRLKNLKGVDLNQAVEESLRSVN--LFHGGvadkpaGKYSGGMKRRLSVAISLIGNPKV 769
Cdd:PLN03232 1320 VLFSG-TVRFNIDPFsehndaDLWEALERAHIKDVIDRNPFGLDaeVSEGG------ENFSVGQRQLLSLARALLRRSKI 1392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 770 VYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYV-LTMTT 848
Cdd:PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDTSAFFrMVHST 1471
|
250
....*....|....*...
gi 334185806 849 SSEHEKDVEMLVQEVSPN 866
Cdd:PLN03232 1472 GPANAQYLSNLVFERREN 1489
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
619-838 |
1.05e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 55.60 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRdgnpPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQH- 696
Cdd:PRK11160 348 YPDQ----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADySEAALRQAISVVSQRv 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 DLLWETLtgREHLLfygrLKNLKGVDlnQAVEESLRSVNLfhGGVADKPAG----------KYSGGMKRRLSVAISLIGN 766
Cdd:PRK11160 424 HLFSATL--RDNLL----LAAPNASD--EALIEVLQQVGL--EKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLHD 493
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLcDRLGIFVDGRLQCIGNPKEL---KGRY 838
Cdd:PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQELlaqQGRY 567
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
638-787 |
1.18e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 55.56 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 638 VPsGECFGMLGPNGAGKTSFINMMTGLVKPTSGA-AFVQGLdickdmdrvytSMGVCPQHDLlwETLTGREHLLFYgrLK 716
Cdd:PRK10636 336 VP-GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEiGLAKGI-----------KLGYFAQHQL--EFLRADESPLQH--LA 399
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334185806 717 NLKGVDLNQAVEESLRSVNlFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNL 787
Cdd:PRK10636 400 RLAPQELEQKLRDYLGGFG-FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
636-826 |
1.25e-07 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 53.63 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 636 LAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKdMDRV------YTSMGVCPQHDLLWETLTGREHL 709
Cdd:PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQ-MDEEaraklrAKHVGFVFQSFMLIPTLNALENV 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFYGRLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWT 789
Cdd:PRK10584 110 ELPALLRGESSRQSRNGAKALLEQLGL--GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
|
170 180 190
....*....|....*....|....*....|....*....
gi 334185806 790 VIKNAKRH--TAIILTTHSMEEAEfLCDRLGIFVDGRLQ 826
Cdd:PRK10584 188 LLFSLNREhgTTLILVTHDLQLAA-RCDRRLRLVNGQLQ 225
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
641-820 |
1.43e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 55.18 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 641 GECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQgLDICkdmdrvYTsmgvcPQhdllwetltgrehllfygRLKNlkg 720
Cdd:COG1245 366 GEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDED-LKIS------YK-----PQ------------------YISP--- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 721 vDLNQAVEESLRSVN-------LFHGGVA---------DKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:COG1245 413 -DYDGTVEEFLRSANtddfgssYYKTEIIkplglekllDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 491
|
170 180 190
....*....|....*....|....*....|....*...
gi 334185806 785 KNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIF 820
Cdd:COG1245 492 LAVAKAIRRfaENRGKTAMVVDHDIYLIDYISDRLMVF 529
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
619-839 |
2.24e-07 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 54.58 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 619 YPGRdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMDR--VYTSMGVCPQh 696
Cdd:PRK13657 344 YDNS-----RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI-RTVTRasLRRNIAVVFQ- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 dllwetltgrEHLLFygrlknlkgvdlNQAVEESLR---------------SVNLFHGGVADKPAG----------KYSG 751
Cdd:PRK13657 417 ----------DAGLF------------NRSIEDNIRvgrpdatdeemraaaERAQAHDFIERKPDGydtvvgergrQLSG 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 752 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKN----LWTVIKNakRHTAII---LTThsMEEAeflcDRLGIFVDGR 824
Cdd:PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKvkaaLDELMKG--RTTFIIahrLST--VRNA----DRILVFDNGR 546
|
250
....*....|....*
gi 334185806 825 LQCIGNPKELKGRYG 839
Cdd:PRK13657 547 VVESGSFDELVARGG 561
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
646-780 |
2.36e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 54.85 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 646 MLGPNGAGKTSFINMMTGlvKPTSGaaFVQGlDI-----CKDMDRVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKG 720
Cdd:PLN03140 911 LMGVSGAGKTTLMDVLAG--RKTGG--YIEG-DIrisgfPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE 985
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 721 VDLNQA------VEESLRSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 780
Cdd:PLN03140 986 VSKEEKmmfvdeVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
628-822 |
3.24e-07 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 52.27 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDickdmdrvytsmgvcpqhDLLWETLTGRE 707
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPD------------------NQFGREASLID 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 708 HLLFYGrlknlkgvDLNQAVEeSLRSVnlfhgGVAD-----KPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 782
Cdd:COG2401 105 AIGRKG--------DFKDAVE-LLNAV-----GLSDavlwlRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQ 170
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 334185806 783 SRKNL-WTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVD 822
Cdd:COG2401 171 TAKRVaRNLQKLARRAgITLVVATHHYDVIDDLQPDLLIFVG 212
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
617-829 |
3.47e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 53.85 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 617 KVYPGrdgnppKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQH 696
Cdd:PRK10762 12 KAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 697 ---DLLWEtLTGREHLlFYGR--LKNLKGVDLNQAVEES---LRSVNLFHGgvADKPAGKYSGGMKRRLSVAISLIGNPK 768
Cdd:PRK10762 86 qelNLIPQ-LTIAENI-FLGRefVNRFGRIDWKKMYAEAdklLARLNLRFS--SDKLVGELSIGEQQMVEIAKVLSFESK 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKNAK-RHTAIILTTHSMEEAEFLCDRLGIFVDGrlQCIG 829
Cdd:PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKsQGRGIVYISHRLKEIFEICDDVTVFRDG--QFIA 221
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
634-780 |
4.65e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 53.58 E-value: 4.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGA---------AFV-QGLDickDMDRVYTsmgvcpqhdlLWETL 703
Cdd:PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTikigetvklAYVdQSRD---ALDPNKT----------VWEEI 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 704 TGREHLLFYGRlknlkgvdlnqaVEESLR----SVNlFHGGVADKPAGKYSGGMKRRLSVAISLI--GNpkVVYMDEPST 777
Cdd:PRK11819 410 SGGLDIIKVGN------------REIPSRayvgRFN-FKGGDQQKKVGVLSGGERNRLHLAKTLKqgGN--VLLLDEPTN 474
|
...
gi 334185806 778 GLD 780
Cdd:PRK11819 475 DLD 477
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
636-815 |
4.90e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 51.98 E-value: 4.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 636 LAVP-SGECFGMLGPNGAGKTSFINMMTGLVKPTSGAA---------------------FVQGLDicKDMDRVytsmgVC 693
Cdd:cd03236 20 LPVPrEGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdwdeildefrgselqnyFTKLLE--GDVKVI-----VK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 694 PQH-DLLWETLTGREHLLfygrlknLKGVDLNQAVEESLRSVNLFHggVADKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:cd03236 93 PQYvDLIPKAVKGKVGEL-------LKKKDERGKLDELVDQLELRH--VLDRNIDQLSGGELQRVAIAAALARDADFYFF 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 334185806 773 DEPSTGLDPASRKNLWTVIKNAKRHT-AIILTTHSMEEAEFLCD 815
Cdd:cd03236 164 DEPSSYLDIKQRLNAARLIRELAEDDnYVLVVEHDLAVLDYLSD 207
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
634-805 |
5.79e-07 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 51.39 E-value: 5.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK-DMDRVYTSMGVCPQhdlLWETLTGREHLLFy 712
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRgDRSRFMAYLGHLPG---LKADLSTLENLHF- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 713 grLKNLKGVDLNQAVEESLRSVNLfhGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASrKNLWTVIK 792
Cdd:PRK13543 106 --LCGLHGRRAKQMPGSALAIVGL--AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEG-ITLVNRMI 180
|
170
....*....|....*
gi 334185806 793 NAKRHT--AIILTTH 805
Cdd:PRK13543 181 SAHLRGggAALVTTH 195
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
628-825 |
7.62e-07 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 52.71 E-value: 7.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQG--LDIC--KDM----------DRvyTSMGVC 693
Cdd:COG1129 265 GGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpVRIRspRDAiragiayvpeDR--KGEGLV 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 694 PQHDLLwETLTgrehLLFYGRLKNLKGVD---LNQAVEESLRSVNLFHGGVaDKPAGKYSGGM--KrrlsVAIS--LIGN 766
Cdd:COG1129 343 LDLSIR-ENIT----LASLDRLSRGGLLDrrrERALAEEYIKRLRIKTPSP-EQPVGNLSGGNqqK----VVLAkwLATD 412
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 767 PKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:COG1129 413 PKVLILDEPTRGIDVGAKAEIYRLIRElAAEGKAVIVISSELPELLGLSDRILVMREGRI 472
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
628-825 |
8.07e-07 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 51.03 E-value: 8.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDR----VYTSMGVCPQ-HDLLWET 702
Cdd:PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRevpfLRRQIGMIFQdHHLLMDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 703 lTGREHLLFYGRLKNLKGVDLNQAVEESLRSVnlfhgGVADKPAG---KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 779
Cdd:PRK10908 95 -TVYDNVAIPLIIAGASGDDIRRRVSAALDKV-----GLLDKAKNfpiQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 334185806 780 DPASRKNLWTVIKNAKR-HTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK10908 169 DDALSEGILRLFEEFNRvGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
634-826 |
8.21e-07 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 51.78 E-value: 8.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKpTSGAAFVQGLDICK-DMDRVYTSMGVCPQHDLLWeTLTGREHLLFY 712
Cdd:cd03289 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSvPLQKWRKAFGVIPQKVFIF-SGTFRKNLDPY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 713 GR------LKNLKGVDLNQAVEESLRSVN--LFHGGVAdkpagkYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:cd03289 101 GKwsdeeiWKVAEEVGLKSVIEQFPGQLDfvLVDGGCV------LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 334185806 785 KNLWTVIKNAKRHTAIILTTHSMeEAEFLCDRLGIFVDGRLQ 826
Cdd:cd03289 175 QVIRKTLKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVR 215
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
618-834 |
1.36e-06 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 51.95 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 618 VYPGRDGNPpkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIcKDMD-RVYTSMGVC--- 693
Cdd:COG3845 264 SVRDDRGVP---ALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDI-TGLSpRERRRLGVAyip 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 694 --PQHDLLWETLTGREHLLF--YGRLKNLKG--VDLNQAVEESLRSVNLFH--GGVADKPAGKYSGGMKRRLSVAISLIG 765
Cdd:COG3845 340 edRLGRGLVPDMSVAENLILgrYRRPPFSRGgfLDRKAIRAFAEELIEEFDvrTPGPDTPARSLSGGNQQKVILARELSR 419
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 766 NPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH-TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:COG3845 420 DPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAgAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEA 489
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
631-805 |
2.40e-06 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 51.35 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 631 VRVLSLAVPSGEcfGML--GPNGAGKTSFINMMTGLVKPTSGaafvqgldickdmdRVytsmgVCPQHdllwetltgrEH 708
Cdd:COG4178 379 LEDLSLSLKPGE--RLLitGPSGSGKSTLLRAIAGLWPYGSG--------------RI-----ARPAG----------AR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 709 LLF-----Y---GRLKNL-------KGVDlNQAVEESLRSVNLfhggvaDKPAGKY----------SGGMKRRLSVAISL 763
Cdd:COG4178 428 VLFlpqrpYlplGTLREAllypataEAFS-DAELREALEAVGL------GHLAERLdeeadwdqvlSLGEQQRLAFARLL 500
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 334185806 764 IGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTH 805
Cdd:COG4178 501 LHKPDWLFLDEATSALDEENEAALYQLLREELPGTTVISVGH 542
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
629-787 |
2.97e-06 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 49.79 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 629 KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDmDRVYTSMGVCPQHDLLWETLTGREH 708
Cdd:PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG-DYSYRSQRIRMIFQDPSTSLNPRQR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 709 ----LLFYGRLK-NLKGVDLNQAVEESLRSVNLFHGGVADKPAgKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 783
Cdd:PRK15112 106 isqiLDFPLRLNtDLEPEQREKQIIETLRQVGLLPDHASYYPH-MLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184
|
....
gi 334185806 784 RKNL 787
Cdd:PRK15112 185 RSQL 188
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
626-824 |
3.01e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 50.88 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 626 PPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWETLTg 705
Cdd:PRK10982 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 706 REHL--LFYGRLKnLKG--VDLNQAVEESLRSVNLFHGGVADK-PAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 780
Cdd:PRK10982 88 RSVMdnMWLGRYP-TKGmfVDQDKMYRDTKAIFDELDIDIDPRaKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 334185806 781 PASRKNLWTVIKNAK-RHTAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:PRK10982 167 EKEVNHLFTIIRKLKeRGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
360-507 |
3.12e-06 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 50.47 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 360 NSLVYEKQQRLRIIMKMHGLGDGPYWIISY-AYFLALSTFYII-FLMIFGSVIGLKFFLLNdFSLQFSFYFVYinlqISI 437
Cdd:pfam12698 181 VSIVEEKESRIKERLLVSGVSPLQYWLGKIlGDFLVGLLQLLIiLLLLFGIGIPFGNLGLL-LLLFLLYGLAY----IAL 255
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 438 AFLLSSAFSKVETASVAAYLyvFGSGLLGMFLFQFLLEGLSFPRRWIFVMelYPGFSLYRGLYEFSQNAY 507
Cdd:pfam12698 256 GYLLGSLFKNSEDAQSIIGI--VILLLSGFFGGLFPLEDPPSFLQWIFSI--IPFFSPIDGLLRLIYGDS 321
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
624-857 |
3.14e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 51.48 E-value: 3.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 624 GNPPkkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldickdmdrvytSMGVCPQHdlLW-ET 702
Cdd:TIGR00957 649 DLPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYVPQQ--AWiQN 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 703 LTGREHLLFygrlknlkGVDLN----QAVEES---LRSVNLFHGGVADKPAGK---YSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:TIGR00957 713 DSLRENILF--------GKALNekyyQQVLEAcalLPDLEILPSGDRTEIGEKgvnLSGGQKQRVSLARAVYSNADIYLF 784
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 773 DEPSTGLDPASRKNLWT-------VIKNAKRhtaiILTTHSMeeaEFL--CDRLGIFVDGRLQCIGNPKELKGRYGG-SY 842
Cdd:TIGR00957 785 DDPLSAVDAHVGKHIFEhvigpegVLKNKTR----ILVTHGI---SYLpqVDVIIVMSGGKISEMGSYQELLQRDGAfAE 857
|
250
....*....|....*
gi 334185806 843 VLTMTTSSEHEKDVE 857
Cdd:TIGR00957 858 FLRTYAPDEQQGHLE 872
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
646-780 |
4.43e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 50.63 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 646 MLGPNGAGKTSFINMMTGLVKPTSGAAFVQGldickdmdrvYTSMGVCPQHDLLWETLTGREhLLFYGRLknLKGVdLNQ 725
Cdd:PLN03073 540 MVGPNGIGKSTILKLISGELQPSSGTVFRSA----------KVRMAVFSQHHVDGLDLSSNP-LLYMMRC--FPGV-PEQ 605
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 726 AVEESLRSVNLfHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 780
Cdd:PLN03073 606 KLRAHLGSFGV-TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
626-780 |
6.00e-06 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 49.32 E-value: 6.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 626 PPK--KAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDIC----KDMDRVYTSMGVCPQHDLl 699
Cdd:PRK15079 30 PPKtlKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLgmkdDEWRAVRSDIQMIFQDPL- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 wETLTGR--------EHLLFYgrLKNLKGVDLNQAVEESLRSVNLFHGGVADKPAgKYSGGMKRRLSVAISLIGNPKVVY 771
Cdd:PRK15079 109 -ASLNPRmtigeiiaEPLRTY--HPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH-EFSGGQCQRIGIARALILEPKLII 184
|
....*....
gi 334185806 772 MDEPSTGLD 780
Cdd:PRK15079 185 CDEPVSALD 193
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
634-834 |
6.30e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 50.36 E-value: 6.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVqgldickdmdrVYTSMGVCPQHDLLWETlTGREHLLF-- 711
Cdd:PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------IRGSVAYVPQVSWIFNA-TVRENILFgs 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 712 ------YGR----------LKNLKGVDLNQAVEeslRSVNLfhggvadkpagkySGGMKRRLSVAISLIGNPKVVYMDEP 775
Cdd:PLN03232 704 dfeserYWRaidvtalqhdLDLLPGRDLTEIGE---RGVNI-------------SGGQKQRVSMARAVYSNSDIYIFDDP 767
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 776 STGLDP-ASRKNLWTVIKNAKRHTAIILTTHSMeeaEFL--CDRLGIFVDGRLQCIGNPKEL 834
Cdd:PLN03232 768 LSALDAhVAHQVFDSCMKDELKGKTRVLVTNQL---HFLplMDRIILVSEGMIKEEGTFAEL 826
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
669-842 |
1.50e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 49.26 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 669 SGAAFVQGLDIC----KDMDRVYTsmgVCPQHDLLWeTLTGREHLLFyGR----LKNLKGVDLNQAVEESLRSV-NLFHG 739
Cdd:PTZ00265 1276 SGKILLDGVDICdynlKDLRNLFS---IVSQEPMLF-NMSIYENIKF-GKedatREDVKRACKFAAIDEFIESLpNKYDT 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 740 GVAdkPAGK-YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHT--AIILTTH---SMEEAEFL 813
Cdd:PTZ00265 1351 NVG--PYGKsLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdkTIITIAHriaSIKRSDKI 1428
|
170 180 190
....*....|....*....|....*....|....
gi 334185806 814 C-----DRLGIFVdgrlQCIGNPKELKGRYGGSY 842
Cdd:PTZ00265 1429 VvfnnpDRTGSFV----QAHGTHEELLSVQDGVY 1458
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
634-834 |
1.54e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 48.97 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVqgldickdmdrVYTSMGVCPQHDLLWETlTGREHLLF-- 711
Cdd:PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-----------IRGTVAYVPQVSWIFNA-TVRDNILFgs 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 712 ------YGR----------LKNLKGVDLNQAVEeslRSVNLfhggvadkpagkySGGMKRRLSVAISLIGNPKVVYMDEP 775
Cdd:PLN03130 704 pfdperYERaidvtalqhdLDLLPGGDLTEIGE---RGVNI-------------SGGQKQRVSMARAVYSNSDVYIFDDP 767
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 776 STGLDP-ASRKNLWTVIKNAKRHTAIILTTHSMeeaEFL--CDRLGIFVDGRLQCIGNPKEL 834
Cdd:PLN03130 768 LSALDAhVGRQVFDKCIKDELRGKTRVLVTNQL---HFLsqVDRIILVHEGMIKEEGTYEEL 826
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
634-801 |
1.65e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 48.87 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVY--TSMGVCPQHDLLWETLTGREHLLF 711
Cdd:PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWwrSKIGVVSQDPLLFSNSIKNNIKYS 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 712 YGRLKNLKGV---------------------------DLN------------------QAVEES-LRSVN---LFHGGVA 742
Cdd:PTZ00265 484 LYSLKDLEALsnyynedgndsqenknkrnscrakcagDLNdmsnttdsneliemrknyQTIKDSeVVDVSkkvLIHDFVS 563
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185806 743 DKP----------AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAK----RHTAII 801
Cdd:PTZ00265 564 ALPdkyetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKgnenRITIII 636
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
641-820 |
1.87e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 48.27 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 641 GECFGMLGPNGAGKTSFINMMTGLVKPTSGaafvqglDICKDMDRVYTsmgvcPQhdllwetltgrehllfygRLKnlkg 720
Cdd:PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEG-------EVDPELKISYK-----PQ------------------YIK---- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 721 VDLNQAVEESLRSVNLFHGG---------------VADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRK 785
Cdd:PRK13409 411 PDYDGTVEDLLRSITDDLGSsyykseiikplqlerLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRL 490
|
170 180 190
....*....|....*....|....*....|....*..
gi 334185806 786 NLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIF 820
Cdd:PRK13409 491 AVAKAIRRiaEEREATALVVDHDIYMIDYISDRLMVF 527
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
634-808 |
2.88e-05 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 48.37 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKpTSGAAFVQGLDICK-DMDRVYTSMGVCPQHDLLWeTLTGREHLLFY 712
Cdd:TIGR01271 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSvTLQTWRKAFGVIPQKVFIF-SGTFRKNLDPY 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 713 GRL------KNLKGVDLNQAVEESLRSVN--LFHGGVAdkpagkYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 784
Cdd:TIGR01271 1316 EQWsdeeiwKVAEEVGLKSVIEQFPDKLDfvLVDGGYV------LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL 1389
|
170 180
....*....|....*....|....
gi 334185806 785 KNLWTVIKNAKRHTAIILTTHSME 808
Cdd:TIGR01271 1390 QIIRKTLKQSFSNCTVILSEHRVE 1413
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
648-808 |
3.53e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 45.63 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 648 GPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGvcpqHDL-LWETLTGREHLLFYGRLKNlkGVDLNQA 726
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG----HNLgLKLEMTVFENLKFWSEIYN--SAETLYA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 727 VEESLRSVNLFhggvaDKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHS 806
Cdd:PRK13541 107 AIHYFKLHDLL-----DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
|
..
gi 334185806 807 ME 808
Cdd:PRK13541 182 LE 183
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
631-806 |
4.43e-05 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 44.84 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 631 VRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAafvqgLDICKDMDRVYTsmgvcPQHDLLWE-TLtgREhL 709
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR-----IGMPEGEDLLFL-----PQRPYLPLgTL--RE-Q 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFYGRLKNLkgvdlnqaveeslrsvnlfhggvadkpagkySGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWT 789
Cdd:cd03223 84 LIYPWDDVL-------------------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
|
170
....*....|....*..
gi 334185806 790 VIKnaKRHTAIILTTHS 806
Cdd:cd03223 133 LLK--ELGITVISVGHR 147
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
626-824 |
7.35e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 46.39 E-value: 7.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 626 PPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAA--------------------------FVQGLDI 679
Cdd:PRK10261 27 QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVqcdkmllrrrsrqvielseqsaaqmrHVRGADM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 680 CKDMDRVYTSMG-VCPQHDLLWETLtgREHllfygrlknlKGVDLNQAVEESLRSVNLFHGGVADKPAGKY----SGGMK 754
Cdd:PRK10261 107 AMIFQEPMTSLNpVFTVGEQIAESI--RLH----------QGASREEAMVEAKRMLDQVRIPEAQTILSRYphqlSGGMR 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185806 755 RRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTA--IILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:PRK10261 175 QRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSmgVIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
608-780 |
8.78e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.04 E-value: 8.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 608 HAIVCDKLRKVYpgrDGNPPKKAvrvLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAafVQGLDickdmdrvY 687
Cdd:PRK15064 318 NALEVENLTKGF---DNGPLFKN---LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT--VKWSE--------N 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 688 TSMGVCPQ---HDLLwETLTgrehlLFYGRLKNLKGVDLNQAVEESLRSVnLFHGGVADKPAGKYSGGMKRRLSVAISLI 764
Cdd:PRK15064 382 ANIGYYAQdhaYDFE-NDLT-----LFDWMSQWRQEGDDEQAVRGTLGRL-LFSQDDIKKSVKVLSGGEKGRMLFGKLMM 454
|
170
....*....|....*.
gi 334185806 765 GNPKVVYMDEPSTGLD 780
Cdd:PRK15064 455 QKPNVLVMDEPTNHMD 470
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
648-824 |
1.03e-04 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 45.64 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 648 GPNGAGKTSFINMMTGLVKPTSGaafvqglDICKDmDRVY--TSMGVC-PQHDllwetltgR-------EHLLF--YGRL 715
Cdd:PRK11144 31 GRSGAGKTSLINAISGLTRPQKG-------RIVLN-GRVLfdAEKGIClPPEK--------RrigyvfqDARLFphYKVR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 716 KNLK-GVDlNQAVEESLRSVNLFhgGVA---DKPAGKYSGGMKRRlsVAI--SLIGNPKVVYMDEPSTGLD-PASRKNLW 788
Cdd:PRK11144 95 GNLRyGMA-KSMVAQFDKIVALL--GIEpllDRYPGSLSGGEKQR--VAIgrALLTAPELLLMDEPLASLDlPRKRELLP 169
|
170 180 190
....*....|....*....|....*....|....*..
gi 334185806 789 TVIKNAKR-HTAIILTTHSMEEAEFLCDRLGIFVDGR 824
Cdd:PRK11144 170 YLERLAREiNIPILYVSHSLDEILRLADRVVVLEQGK 206
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
614-780 |
1.08e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 45.88 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 614 KLRKVYPgrdgnpPKKAV-RVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQ-GLDIckdmdrvytsmG 691
Cdd:PRK11819 11 RVSKVVP------PKKQIlKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPApGIKV-----------G 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 692 VCPQHDLLWETLTGREHL-------------------LF-------------YGRLKN----LKGVDLNQAVE---ESLR 732
Cdd:PRK11819 74 YLPQEPQLDPEKTVRENVeegvaevkaaldrfneiyaAYaepdadfdalaaeQGELQEiidaADAWDLDSQLEiamDALR 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 334185806 733 SVNlfhggvADKPAGKYSGGMKRRlsVAIS--LIGNPKVVYMDEPSTGLD 780
Cdd:PRK11819 154 CPP------WDAKVTKLSGGERRR--VALCrlLLEKPDMLLLDEPTNHLD 195
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
634-834 |
2.02e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 45.50 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 634 LSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICK----DMDRVytsMGVCPQHDLL---------- 699
Cdd:PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKfglmDLRKV---LGIIPQAPVLfsgtvrfnld 1334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 700 ----------WETLTgREHLLFYGRlKNLKGvdLNQAVEEslrsvnlfhggvadkpAGK-YSGGMKRRLSVAISLIGNPK 768
Cdd:PLN03130 1335 pfnehndadlWESLE-RAHLKDVIR-RNSLG--LDAEVSE----------------AGEnFSVGQRQLLSLARALLRRSK 1394
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334185806 769 VVYMDEPSTGLDPASRKNLWTVIKNAKRHTAIILTTHSMEEAeFLCDRLGIFVDGRLQCIGNPKEL 834
Cdd:PLN03130 1395 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILVLDAGRVVEFDTPENL 1459
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
626-825 |
2.34e-04 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 43.92 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 626 PPKKAVRVLSLAVPSGECFGMLGPNGAGKT----SFINMMTGLVKPTSGAAFVQGLDICKDMDR---VYTSM-----GVC 693
Cdd:PRK10418 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPCALRgrkIATIMqnprsAFN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 694 PQHDLlweTLTGREHLLFYGRLKNlkgvdlNQAVEESLRSVNLFHGG-VADKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:PRK10418 94 PLHTM---HTHARETCLALGKPAD------DATLTAALEAVGLENAArVLKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 773 DEPSTGLDPASRKNLWTVIKN--AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK10418 165 DEPTTDLDVVAQARILDLLESivQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
625-826 |
3.82e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 44.15 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 625 NPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSfinMMTGL--VKP--TSGAAFVQG--LDI--CKD-------M---DR- 685
Cdd:PRK13549 272 NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTE---LVQCLfgAYPgrWEGEIFIDGkpVKIrnPQQaiaqgiaMvpeDRk 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 686 ---VYTSMGVCpqHDLlweTLTGREHLLFYGRLKNLKGVDlnqAVEESLR--SVNLFHggvADKPAGKYSGGMKRRLSVA 760
Cdd:PRK13549 349 rdgIVPVMGVG--KNI---TLAALDRFTGGSRIDDAAELK---TILESIQrlKVKTAS---PELAIARLSGGNQQKAVLA 417
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185806 761 ISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQ 826
Cdd:PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQlVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
641-783 |
5.18e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 43.94 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 641 GECFGMLGPNGAGKTSFINMMT----GLVKPTSGAAFVQGLDIcKDMDRVYTSMGV-CPQHDLLWETLTGREHLLFYGRL 715
Cdd:TIGR00956 87 GELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVITYDGITP-EEIKKHYRGDVVyNAETDVHFPHLTVGETLDFAARC 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 716 KN----LKGVDlNQAVEESLRSVNL--------FHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 783
Cdd:TIGR00956 166 KTpqnrPDGVS-REEYAKHIADVYMatyglshtRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT 244
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
748-829 |
5.34e-04 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 43.69 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 748 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRHTAI--ILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIayLFISHDMAVVERISHRVAVMYLGQI 542
|
....
gi 334185806 826 QCIG 829
Cdd:PRK10261 543 VEIG 546
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
747-814 |
6.15e-04 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 43.54 E-value: 6.15e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 747 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIK--NAKRHTAIILTTHSMEEAEFLC 814
Cdd:PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKslQQKHQLAYLFISHDLHVVRALC 493
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
626-780 |
7.94e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 43.02 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 626 PPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFV-QGLDIC------KDMDRVYTSMgvcpqhDL 698
Cdd:PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCgTKLEVAyfdqhrAELDPEKTVM------DN 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 699 LWE-----TLTGRE-HLLFYgrLKNLkgvdlnqaveeslrsvnLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYM 772
Cdd:PRK11147 404 LAEgkqevMVNGRPrHVLGY--LQDF-----------------LFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464
|
....*...
gi 334185806 773 DEPSTGLD 780
Cdd:PRK11147 465 DEPTNDLD 472
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
630-815 |
8.16e-04 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 41.15 E-value: 8.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINmmTGLVKptSGAAFVQGLdickdmdrvytsmgvcpqhdllwETLTGREHL 709
Cdd:cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYA--SGKARLISF-----------------------LPKFSRNKL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 710 LFYGRLKNLkgVDLNqaveesLRSVNLfhggvaDKPAGKYSGGMKRRLSVAISLIGNPK-VVY-MDEPSTGLDPASRKNL 787
Cdd:cd03238 63 IFIDQLQFL--IDVG------LGYLTL------GQKLSTLSGGELQRVKLASELFSEPPgTLFiLDEPSTGLHQQDINQL 128
|
170 180 190
....*....|....*....|....*....|...
gi 334185806 788 WTVIKN--AKRHTaIILTTHS---MEEAEFLCD 815
Cdd:cd03238 129 LEVIKGliDLGNT-VILIEHNldvLSSADWIID 160
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
747-833 |
8.90e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 42.79 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 747 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKN-AKRHTAIILTTHSMEEAEFLCDRLGIFVDGRL 825
Cdd:PRK10982 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAElAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
....*...
gi 334185806 826 QCIGNPKE 833
Cdd:PRK10982 470 AGIVDTKT 477
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
622-824 |
1.31e-03 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 42.38 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 622 RDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKT-SFINMMTGLvkPTSGAAFVQGlDIckdmdrvytsmgvcpqhdllw 700
Cdd:PRK15134 16 RQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLL--PSPPVVYPSG-DI--------------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 701 etltgrehlLFYG---------RLKNLKG-----------VDLN--QAVEESLRSVNLFHGGVADKPA------------ 746
Cdd:PRK15134 72 ---------RFHGesllhaseqTLRGVRGnkiamifqepmVSLNplHTLEKQLYEVLSLHRGMRREAArgeilncldrvg 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 747 ------------GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKR--HTAIILTTHSMEEAEF 812
Cdd:PRK15134 143 irqaakrltdypHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQelNMGLLFITHNLSIVRK 222
|
250
....*....|..
gi 334185806 813 LCDRLGIFVDGR 824
Cdd:PRK15134 223 LADRVAVMQNGR 234
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
750-813 |
3.11e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 39.27 E-value: 3.11e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185806 750 SGGMKRRLSVAISLIG---NPKVVY-MDEPSTGLDPASRKNL-WTVIKNAKRHTAIILTTHSMEEAEFL 813
Cdd:cd03227 79 SGGEKELSALALILALaslKPRPLYiLDEIDRGLDPRDGQALaEAILEHLVKGAQVIVITHLPELAELA 147
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
615-676 |
3.12e-03 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 41.32 E-value: 3.12e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185806 615 LRKV---YPGRDGNPPKkAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQG 676
Cdd:COG4615 330 LRGVtyrYPGEDGDEGF-TLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDG 393
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
630-676 |
7.15e-03 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 39.96 E-value: 7.15e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 334185806 630 AVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQG 676
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
750-807 |
8.55e-03 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 39.34 E-value: 8.55e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185806 750 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKR--HTAIILTTHSM 807
Cdd:PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQkeNMALVLITHDL 214
|
|
| |
