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Conserved domains on  [gi|42565698|ref|NP_190356|]
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uncharacterized protein AT3G47720 [Arabidopsis thaliana]

Protein Classification

RST domain-containing protein( domain architecture ID 10573496)

RST domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RST pfam12174
RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, ...
 244-310 1.05e-27

RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homolog, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID.


:

Pssm-ID: 432383  Cd Length: 67  Bit Score: 102.57  E-value: 1.05e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42565698   244 NPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRLRSITGDSLLVQIIKSVGQ 310
Cdd:pfam12174   1 RPKSPWMPFPMLLSALSKKLPPSDMDLLQKHYEDFKEKKISREEFVRKLRQIVGDQLLKSTIKSLQQ 67
 
Name Accession Description Interval E-value
RST pfam12174
RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, ...
 244-310 1.05e-27

RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homolog, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID.


Pssm-ID: 432383  Cd Length: 67  Bit Score: 102.57  E-value: 1.05e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42565698   244 NPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRLRSITGDSLLVQIIKSVGQ 310
Cdd:pfam12174   1 RPKSPWMPFPMLLSALSKKLPPSDMDLLQKHYEDFKEKKISREEFVRKLRQIVGDQLLKSTIKSLQQ 67
 
Name Accession Description Interval E-value
RST pfam12174
RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, ...
 244-310 1.05e-27

RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homolog, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID.


Pssm-ID: 432383  Cd Length: 67  Bit Score: 102.57  E-value: 1.05e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42565698   244 NPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRLRSITGDSLLVQIIKSVGQ 310
Cdd:pfam12174   1 RPKSPWMPFPMLLSALSKKLPPSDMDLLQKHYEDFKEKKISREEFVRKLRQIVGDQLLKSTIKSLQQ 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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