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Conserved domains on  [gi|15232596|ref|NP_190247|]
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DCL protein (DUF3223) [Arabidopsis thaliana]

Protein Classification

DCL family protein( domain architecture ID 10568891)

DCL (defective chloroplasts and leaves protein) family protein is a DUF3223 domain-containing protein; similar to Solanum lycopersicum chloroplastic protein DCL that has a function in the early stage of chloroplast development and palisade cell morphogenesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3223 pfam11523
Protein of unknown function (DUF3223); This family of proteins has no known function.
 106-182 1.36e-34

Protein of unknown function (DUF3223); This family of proteins has no known function.


:

Pssm-ID: 431917  Cd Length: 75  Bit Score: 117.35  E-value: 1.36e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15232596   106 KEILHsdRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCL 182
Cdd:pfam11523   1 KAILH--RYPDGERLNEEDEAVLLEKLLKYHPEAESKIGCGIDHIKVGKHPDFRGSRCFFVVRTDGTFEDFSYRKCV 75
 
Name Accession Description Interval E-value
DUF3223 pfam11523
Protein of unknown function (DUF3223); This family of proteins has no known function.
 106-182 1.36e-34

Protein of unknown function (DUF3223); This family of proteins has no known function.


Pssm-ID: 431917  Cd Length: 75  Bit Score: 117.35  E-value: 1.36e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15232596   106 KEILHsdRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCL 182
Cdd:pfam11523   1 KAILH--RYPDGERLNEEDEAVLLEKLLKYHPEAESKIGCGIDHIKVGKHPDFRGSRCFFVVRTDGTFEDFSYRKCV 75
 
Name Accession Description Interval E-value
DUF3223 pfam11523
Protein of unknown function (DUF3223); This family of proteins has no known function.
 106-182 1.36e-34

Protein of unknown function (DUF3223); This family of proteins has no known function.


Pssm-ID: 431917  Cd Length: 75  Bit Score: 117.35  E-value: 1.36e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15232596   106 KEILHsdRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCL 182
Cdd:pfam11523   1 KAILH--RYPDGERLNEEDEAVLLEKLLKYHPEAESKIGCGIDHIKVGKHPDFRGSRCFFVVRTDGTFEDFSYRKCV 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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