NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15230069|ref|NP_189620|]
View 

General transcription factor 2-related zinc finger protein [Arabidopsis thaliana]

Protein Classification

FAM200 family protein( domain architecture ID 82403)

FAM200 family protein is a DUF4371 domain-containing protein; similar to Homo sapiens protein FAM200A and protein FAM200B

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF4371 super family cl46273
Domain of unknown function (DUF4371);
26-214 2.66e-95

Domain of unknown function (DUF4371);


The actual alignment was detected with superfamily member pfam14291:

Pssm-ID: 480613  Cd Length: 236  Bit Score: 288.75  E-value: 2.66e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230069    26 ALHKQTNVVKNDYRIRLNASIDVSRHLLHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVvLKNAPKNNQMTSP 105
Cdd:pfam14291  49 ILHKETDLEKNDYRIWLKASIDIIIHLLHQGLPLRGHDESEESTNKGLFVELLKYTAGQDEVVKKV-LKNAPKNNTYTSP 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230069   106 PIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDS 185
Cdd:pfam14291 128 PIQNDIVNCFSNEVTRSIIEEMDNDVFGILVDETADASDKEQMAIVFRYVDKYGVPIERFIGVIHVQETSSLSLKSAIDS 207
                         170       180
                  ....*....|....*....|....*....
gi 15230069   186 LFAKYGLSLKKLRGKGYDGASNMKGKFNG 214
Cdd:pfam14291 208 LLKSLGISLKKLRSQCYDGASNMSGEFNG 236
 
Name Accession Description Interval E-value
DUF4371 pfam14291
Domain of unknown function (DUF4371);
26-214 2.66e-95

Domain of unknown function (DUF4371);


Pssm-ID: 405048  Cd Length: 236  Bit Score: 288.75  E-value: 2.66e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230069    26 ALHKQTNVVKNDYRIRLNASIDVSRHLLHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVvLKNAPKNNQMTSP 105
Cdd:pfam14291  49 ILHKETDLEKNDYRIWLKASIDIIIHLLHQGLPLRGHDESEESTNKGLFVELLKYTAGQDEVVKKV-LKNAPKNNTYTSP 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230069   106 PIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDS 185
Cdd:pfam14291 128 PIQNDIVNCFSNEVTRSIIEEMDNDVFGILVDETADASDKEQMAIVFRYVDKYGVPIERFIGVIHVQETSSLSLKSAIDS 207
                         170       180
                  ....*....|....*....|....*....
gi 15230069   186 LFAKYGLSLKKLRGKGYDGASNMKGKFNG 214
Cdd:pfam14291 208 LLKSLGISLKKLRSQCYDGASNMSGEFNG 236
 
Name Accession Description Interval E-value
DUF4371 pfam14291
Domain of unknown function (DUF4371);
26-214 2.66e-95

Domain of unknown function (DUF4371);


Pssm-ID: 405048  Cd Length: 236  Bit Score: 288.75  E-value: 2.66e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230069    26 ALHKQTNVVKNDYRIRLNASIDVSRHLLHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVvLKNAPKNNQMTSP 105
Cdd:pfam14291  49 ILHKETDLEKNDYRIWLKASIDIIIHLLHQGLPLRGHDESEESTNKGLFVELLKYTAGQDEVVKKV-LKNAPKNNTYTSP 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230069   106 PIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDS 185
Cdd:pfam14291 128 PIQNDIVNCFSNEVTRSIIEEMDNDVFGILVDETADASDKEQMAIVFRYVDKYGVPIERFIGVIHVQETSSLSLKSAIDS 207
                         170       180
                  ....*....|....*....|....*....
gi 15230069   186 LFAKYGLSLKKLRGKGYDGASNMKGKFNG 214
Cdd:pfam14291 208 LLKSLGISLKKLRSQCYDGASNMSGEFNG 236
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH